RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 RITA1Q96K30 269 aa9.58□□□□□ -0.88
HMGB1-206ENST00000405805 TRAV2A0A0B4J234 112 aa9.57□□□□□ -0.88
HMGB1-206ENST00000405805 ARMS2P0C7Q2 107 aa9.57□□□□□ -0.88
HMGB1-206ENST00000405805 PPP1R27Q86WC6 154 aa9.57□□□□□ -0.88
HMGB1-206ENST00000405805 Q8TAT8 98 aa9.57□□□□□ -0.88
HMGB1-206ENST00000405805 WNK1Q9H4A3 2382 aa9.57□□□□□ -0.88
HMGB1-206ENST00000405805 IGHV1-24A0A0C4DH33 117 aa9.57□□□□□ -0.88
HMGB1-206ENST00000405805 TCRAP04437 139 aa9.57□□□□□ -0.88
HMGB1-206ENST00000405805 TMEM170BQ5T4T1 132 aa9.57□□□□□ -0.88
HMGB1-206ENST00000405805 SPATA12Q7Z6I5 190 aa9.57□□□□□ -0.88
HMGB1-206ENST00000405805 RHOGP84095 191 aa9.57□□□□□ -0.88
HMGB1-206ENST00000405805 C1RLQ9NZP8 487 aa9.57□□□□□ -0.88
HMGB1-206ENST00000405805 TM4SF5O14894 197 aa9.56□□□□□ -0.88
HMGB1-206ENST00000405805 NUP37Q8NFH4 326 aa9.56□□□□□ -0.88
HMGB1-206ENST00000405805 C11orf52Q96A22 123 aa9.56□□□□□ -0.88
HMGB1-206ENST00000405805 ZNF503Q96F45 646 aa9.56□□□□□ -0.88
HMGB1-206ENST00000405805 PSG8Q9UQ74 426 aa9.56□□□□□ -0.88
HMGB1-206ENST00000405805 CRXO43186 299 aaPredicted RBP9.56□□□□□ -0.88
HMGB1-206ENST00000405805 ADIPOQQ15848 244 aa9.56□□□□□ -0.88
HMGB1-206ENST00000405805 C17orf77Q96MU5 243 aa9.56□□□□□ -0.88
HMGB1-206ENST00000405805 ATP5J2P56134 94 aa9.56□□□□□ -0.88
HMGB1-206ENST00000405805 PPDPFLQ8WWR9 84 aa9.56□□□□□ -0.88
HMGB1-206ENST00000405805 PTH2Q96A98 100 aa9.56□□□□□ -0.88
HMGB1-206ENST00000405805 C22orf34Q6ZV56 151 aa9.56□□□□□ -0.88
HMGB1-206ENST00000405805 ORMDL3Q8N138 153 aa9.56□□□□□ -0.88
HMGB1-206ENST00000405805 TLN2Q9Y4G6 2542 aa9.55□□□□□ -0.88
HMGB1-206ENST00000405805 IGHV3OR16-10A0A075B7F0 116 aa9.55□□□□□ -0.88
HMGB1-206ENST00000405805 IGKV2-40A0A087WW87 121 aaPredicted RBP9.55□□□□□ -0.88
HMGB1-206ENST00000405805 LINC01549A6NIU2 74 aa9.55□□□□□ -0.88
HMGB1-206ENST00000405805 IGKV2D-40P01614 121 aaPredicted RBP9.55□□□□□ -0.88
HMGB1-206ENST00000405805 SPANXN1Q5VSR9 72 aa9.55□□□□□ -0.88
HMGB1-206ENST00000405805 NDUFA4L2Q9NRX3 87 aa9.55□□□□□ -0.88
HMGB1-206ENST00000405805 RS1O15537 224 aa9.55□□□□□ -0.88
HMGB1-206ENST00000405805 IFI27P40305 119 aaPredicted RBP9.55□□□□□ -0.88
HMGB1-206ENST00000405805 PATE2Q6UY27 113 aa9.55□□□□□ -0.88
HMGB1-206ENST00000405805 Q8N7P7 452 aa9.55□□□□□ -0.88
HMGB1-206ENST00000405805 LY96Q9Y6Y9 160 aa9.55□□□□□ -0.88
HMGB1-206ENST00000405805 PIEZO1Q92508 2521 aa9.55□□□□□ -0.88
HMGB1-206ENST00000405805 CFAP47Q6ZTR5 3102 aa9.55□□□□□ -0.88
HMGB1-206ENST00000405805 ZNF815PA8K554 130 aa9.55□□□□□ -0.88
HMGB1-206ENST00000405805 DPM2O94777 84 aa9.55□□□□□ -0.88
HMGB1-206ENST00000405805 IGKCP01834 107 aa9.55□□□□□ -0.88
HMGB1-206ENST00000405805 TMEM133Q9H2Q1 129 aa9.55□□□□□ -0.88
HMGB1-206ENST00000405805 TIMM23O14925 209 aa9.54□□□□□ -0.88
HMGB1-206ENST00000405805 SLC25A39Q9BZJ4 359 aaPredicted RBP9.54□□□□□ -0.88
HMGB1-206ENST00000405805 D6R8Y8 96 aa9.54□□□□□ -0.88
HMGB1-206ENST00000405805 LINC00310P59036 64 aa9.54□□□□□ -0.88
HMGB1-206ENST00000405805 KLRD1Q13241 179 aa9.54□□□□□ -0.88
HMGB1-206ENST00000405805 AMN1Q8IY45 258 aa9.54□□□□□ -0.88
HMGB1-206ENST00000405805 NEU4Q8WWR8 484 aaPredicted RBP9.54□□□□□ -0.88
HMGB1-206ENST00000405805 DKK4Q9UBT3 224 aa9.54□□□□□ -0.88
HMGB1-206ENST00000405805 SMIM27A0A1W2PRY6 76 aa9.54□□□□□ -0.88
HMGB1-206ENST00000405805 TMEM213A2RRL7 107 aa9.54□□□□□ -0.88
HMGB1-206ENST00000405805 RPL32P62910 135 aaKnown RBP9.54□□□□□ -0.88
HMGB1-206ENST00000405805 FAM159AQ6UWV7 190 aa9.53□□□□□ -0.88
HMGB1-206ENST00000405805 TMEM167AQ8TBQ9 72 aa9.53□□□□□ -0.88
HMGB1-206ENST00000405805 RNASE6Q93091 150 aaKnown RBP9.53□□□□□ -0.88
HMGB1-206ENST00000405805 FMC1Q96HJ9 113 aa9.53□□□□□ -0.88
HMGB1-206ENST00000405805 MAP1AP78559 2803 aaPredicted RBP9.53□□□□□ -0.88
HMGB1-206ENST00000405805 M0QXV9 152 aa9.53□□□□□ -0.88
HMGB1-206ENST00000405805 PRR30Q53SZ7 412 aaPredicted RBP9.53□□□□□ -0.88
HMGB1-206ENST00000405805 PIP4P1Q86T03 277 aa9.53□□□□□ -0.88
HMGB1-206ENST00000405805 FXYD5Q96DB9 178 aa9.53□□□□□ -0.88
HMGB1-206ENST00000405805 USP9YO00507 2555 aaPredicted RBP9.53□□□□□ -0.88
HMGB1-206ENST00000405805 LOC400499M0QZD8 3231 aa9.53□□□□□ -0.88
HMGB1-206ENST00000405805 IGLV1-44P01699 117 aa9.53□□□□□ -0.88
HMGB1-206ENST00000405805 DDB2Q92466 427 aa9.53□□□□□ -0.88
HMGB1-206ENST00000405805 LINC00527Q9UJ94 153 aa9.53□□□□□ -0.88
HMGB1-206ENST00000405805 LGALS3P17931 250 aaKnown RBP9.53□□□□□ -0.88
HMGB1-206ENST00000405805 FXYD2P54710 66 aa9.53□□□□□ -0.88
HMGB1-206ENST00000405805 C15orf53Q8NAA6 179 aa9.53□□□□□ -0.88
HMGB1-206ENST00000405805 FCN3O75636 299 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 IGHV1-8P0DP01 117 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 GDF5OSQ5U4N7 250 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 GAGE2AQ6NT46 116 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 FAM57AQ8TBR7 257 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 DSCAMO60469 2012 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 TMEM178BH3BS89 294 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 PMVKQ15126 192 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 SP5Q6BEB4 398 aaPredicted RBP9.52□□□□□ -0.89
HMGB1-206ENST00000405805 LYZL1Q6UWQ5 148 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 C8orf46Q8TAG6 207 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 RNF125Q96EQ8 232 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 FAM167A-AS1Q96KT0 104 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 RNASE1P07998 156 aaKnown RBP9.52□□□□□ -0.89
HMGB1-206ENST00000405805 PAX1P15863 534 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 ATP5IP56385 69 aaPredicted RBP9.52□□□□□ -0.89
HMGB1-206ENST00000405805 EIF4EBP1Q13541 118 aaPredicted RBP9.52□□□□□ -0.89
HMGB1-206ENST00000405805 LINC00322Q6ZN03 302 aaPredicted RBP9.52□□□□□ -0.89
HMGB1-206ENST00000405805 ASCL5Q7RTU5 278 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 C1orf159Q96HA4 380 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 FAM215AQ9Y5M1 114 aa9.52□□□□□ -0.89
HMGB1-206ENST00000405805 COL5A1P20908 1838 aaPredicted RBP9.52□□□□□ -0.89
HMGB1-206ENST00000405805 NOTCH2Q04721 2471 aa9.51□□□□□ -0.89
HMGB1-206ENST00000405805 SONP18583 2426 aaKnown RBP9.51□□□□□ -0.89
HMGB1-206ENST00000405805 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.51□□□□□ -0.89
HMGB1-206ENST00000405805 APOBEC3AP31941 199 aaPredicted RBP9.51□□□□□ -0.89
HMGB1-206ENST00000405805 MBD3L4A6NDZ8 208 aaPredicted RBP9.51□□□□□ -0.89
HMGB1-206ENST00000405805 MBD3L3A6NE82 208 aaPredicted RBP9.51□□□□□ -0.89
HMGB1-206ENST00000405805 MBD3L5A6NJ08 208 aaPredicted RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms