RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 E9PLN8 166 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 MRPL23Q16540 153 aaKnown RBP9.53□□□□□ -0.88
SYNPO-202ENST00000394243 TNRC6AQ8NDV7 1962 aaKnown RBP9.53□□□□□ -0.88
SYNPO-202ENST00000394243 WNK2Q9Y3S1 2297 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 THBDP07204 575 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 BAALC-AS2P0C853 105 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 TMEM243Q9BU79 118 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 IGKV1D-17A0A075B6S4 117 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 IGLL5B9A064 214 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 IGLC1P0CG04 106 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 RPL35AP18077 110 aaKnown RBP9.53□□□□□ -0.88
SYNPO-202ENST00000394243 GAFA1Q96PS6 74 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 TMEM178BH3BS89 294 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 POU2AF1Q16633 256 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 MSRB2Q9Y3D2 182 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 TRBV19A0A075B6N1 114 aa9.52□□□□□ -0.88
SYNPO-202ENST00000394243 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.52□□□□□ -0.88
SYNPO-202ENST00000394243 TRAV13-2A0A0B4J235 113 aa9.52□□□□□ -0.89
SYNPO-202ENST00000394243 NUPR1O60356 82 aa9.52□□□□□ -0.89
SYNPO-202ENST00000394243 HOXD3P31249 432 aaPredicted RBP9.52□□□□□ -0.89
SYNPO-202ENST00000394243 ZC2HC1AQ96GY0 325 aa9.52□□□□□ -0.89
SYNPO-202ENST00000394243 ZNRD1Q9P1U0 126 aa9.52□□□□□ -0.89
SYNPO-202ENST00000394243 IGHV3-16A0A0C4DH30 117 aa9.52□□□□□ -0.89
SYNPO-202ENST00000394243 RHPN1-AS1Q9BWJ2 59 aa9.52□□□□□ -0.89
SYNPO-202ENST00000394243 NXPH4O95158 308 aa9.52□□□□□ -0.89
SYNPO-202ENST00000394243 FAM236AA0A1B0GUQ0 79 aa9.52□□□□□ -0.89
SYNPO-202ENST00000394243 FAM236BA0A1B0GV22 79 aa9.52□□□□□ -0.89
SYNPO-202ENST00000394243 C8orf86Q6ZUL3 223 aa9.52□□□□□ -0.89
SYNPO-202ENST00000394243 NTN3O00634 580 aaPredicted RBP9.52□□□□□ -0.89
SYNPO-202ENST00000394243 KLF5Q13887 457 aaPredicted RBP9.51□□□□□ -0.89
SYNPO-202ENST00000394243 SMIM2Q9BVW6 85 aa9.51□□□□□ -0.89
SYNPO-202ENST00000394243 TRPM7Q96QT4 1865 aa9.51□□□□□ -0.89
SYNPO-202ENST00000394243 LTBP4Q8N2S1 1624 aa9.51□□□□□ -0.89
SYNPO-202ENST00000394243 hADV29S1A0JD25 119 aa9.51□□□□□ -0.89
SYNPO-202ENST00000394243 ADAMTS7Q9UKP4 1686 aa9.51□□□□□ -0.89
SYNPO-202ENST00000394243 K7EMI3 77 aa9.51□□□□□ -0.89
SYNPO-202ENST00000394243 NBL1P41271 181 aa9.51□□□□□ -0.89
SYNPO-202ENST00000394243 PRR25Q96S07 402 aa9.51□□□□□ -0.89
SYNPO-202ENST00000394243 A0A1B0GX51 115 aa9.5□□□□□ -0.89
SYNPO-202ENST00000394243 G3V4G9 280 aa9.5□□□□□ -0.89
SYNPO-202ENST00000394243 COA6Q5JTJ3 125 aaKnown RBP9.5□□□□□ -0.89
SYNPO-202ENST00000394243 ACYP1P07311 99 aa9.5□□□□□ -0.89
SYNPO-202ENST00000394243 ZNF672Q499Z4 452 aaPredicted RBP9.5□□□□□ -0.89
SYNPO-202ENST00000394243 BRCA1P38398 1863 aaKnown RBP9.5□□□□□ -0.89
SYNPO-202ENST00000394243 LYPD6BQ8NI32 183 aa9.5□□□□□ -0.89
SYNPO-202ENST00000394243 NOTCH3Q9UM47 2321 aa9.5□□□□□ -0.89
SYNPO-202ENST00000394243 IGKV1-39P01597 117 aa9.5□□□□□ -0.89
SYNPO-202ENST00000394243 IGKV1D-39P04432 117 aa9.5□□□□□ -0.89
SYNPO-202ENST00000394243 TRBV25-1A0A075B6N4 114 aa9.5□□□□□ -0.89
SYNPO-202ENST00000394243 IGHV3-38A0A0C4DH36 116 aa9.5□□□□□ -0.89
SYNPO-202ENST00000394243 TET1Q8NFU7 2136 aa9.5□□□□□ -0.89
SYNPO-202ENST00000394243 EPOPA6NHQ4 379 aa9.5□□□□□ -0.89
SYNPO-202ENST00000394243 CLPSP04118 112 aa9.5□□□□□ -0.89
SYNPO-202ENST00000394243 ZNF407Q9C0G0 2248 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 SSC4DQ8WTU2 575 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 C11orf52Q96A22 123 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 KLK9Q9UKQ9 250 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 SHANK1Q9Y566 2161 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 PRB2P02812 416 aaPredicted RBP9.49□□□□□ -0.89
SYNPO-202ENST00000394243 CFHR1Q03591 330 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 FHL1Q13642 323 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 RNASE13Q5GAN3 156 aaKnown RBP9.49□□□□□ -0.89
SYNPO-202ENST00000394243 MINOS1Q5TGZ0 78 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 NDUFA4L2Q9NRX3 87 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 MINOS1-NBL1R4GNA1 71 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 ARHGAP21Q5T5U3 1957 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 NSUN5P1Q3KNT7 163 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 DYSFO75923 2080 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 TAX1BP3O14907 124 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 TRIOBPQ9H2D6 2365 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 IGKV3D-7A0A0C4DH55 119 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 M0R1W7 72 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 NHSL1Q5SYE7 1610 aa9.49□□□□□ -0.89
SYNPO-202ENST00000394243 ZNF493Q6ZR52 646 aa9.48□□□□□ -0.89
SYNPO-202ENST00000394243 ATOX1O00244 68 aa9.48□□□□□ -0.89
SYNPO-202ENST00000394243 SPINK13Q1W4C9 94 aa9.48□□□□□ -0.89
SYNPO-202ENST00000394243 SPTBN2O15020 2390 aa9.48□□□□□ -0.89
SYNPO-202ENST00000394243 IGHG2P01859 326 aa9.48□□□□□ -0.89
SYNPO-202ENST00000394243 FAM223BA6NKX1 122 aa9.48□□□□□ -0.89
SYNPO-202ENST00000394243 LINC00173Q6ZV60 143 aa9.48□□□□□ -0.89
SYNPO-202ENST00000394243 FAM223AQ8IWN6 122 aa9.48□□□□□ -0.89
SYNPO-202ENST00000394243 USMG5Q96IX5 58 aa9.48□□□□□ -0.89
SYNPO-202ENST00000394243 SCN10AQ9Y5Y9 1956 aa9.48□□□□□ -0.89
SYNPO-202ENST00000394243 ROS1P08922 2347 aa9.48□□□□□ -0.89
SYNPO-202ENST00000394243 CR1LQ2VPA4 569 aa9.48□□□□□ -0.89
SYNPO-202ENST00000394243 FAM120AOSQ5T036 256 aa9.48□□□□□ -0.89
SYNPO-202ENST00000394243 FXYD5Q96DB9 178 aa9.48□□□□□ -0.89
SYNPO-202ENST00000394243 PRSS47A8MTI9 375 aa9.47□□□□□ -0.89
SYNPO-202ENST00000394243 LYPD2Q6UXB3 125 aa9.47□□□□□ -0.89
SYNPO-202ENST00000394243 TEN1Q86WV5 123 aa9.47□□□□□ -0.89
SYNPO-202ENST00000394243 PIP4P2Q8N4L2 257 aa9.47□□□□□ -0.89
SYNPO-202ENST00000394243 ANKRD39Q53RE8 183 aa9.47□□□□□ -0.89
SYNPO-202ENST00000394243 WIPF2Q8TF74 440 aaPredicted RBP9.47□□□□□ -0.89
SYNPO-202ENST00000394243 EGR2P11161 476 aaPredicted RBP9.47□□□□□ -0.89
SYNPO-202ENST00000394243 CMC4P56277 68 aaPredicted RBP9.47□□□□□ -0.89
SYNPO-202ENST00000394243 VOPP1Q96AW1 172 aa9.47□□□□□ -0.89
SYNPO-202ENST00000394243 EML6Q6ZMW3 1958 aa9.47□□□□□ -0.89
SYNPO-202ENST00000394243 OOSP1A8MZH6 123 aa9.47□□□□□ -0.89
SYNPO-202ENST00000394243 DEFB130BP0DP73 79 aa9.47□□□□□ -0.89
SYNPO-202ENST00000394243 DEFB130AP0DP74 79 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms