RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 HIST1H2BKO60814 126 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 HIST1H2BJP06899 126 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 HIST1H2BOP23527 126 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 HIST1H2BBP33778 126 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 HIST1H2BDP58876 126 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 HIST1H2BCP62807 126 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 HIST2H2BEQ16778 126 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-204ENST00000367248 APRG1Q8IVJ8 170 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 HIST1H2BHQ93079 126 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 HIST1H2BNQ99877 126 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 HIST1H2BMQ99879 126 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 GAGE10A6NGK3 116 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 S100A7L2Q5SY68 101 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 IGLC1P0CG04 106 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 LINC00479Q96M42 142 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 Q9HAA7 133 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 BCL6BQ8N143 479 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-204ENST00000367248 CST9LQ9H4G1 147 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 AZU1P20160 251 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 CLPSL2Q6UWE3 100 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 IGHV3-38A0A0C4DH36 116 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 CENPVL3A0A0U1RRI6 287 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 DMRT1Q9Y5R6 373 aa9.19□□□□□ -0.94
SYNE1-204ENST00000367248 H3BUA1 57 aa9.18□□□□□ -0.94
SYNE1-204ENST00000367248 HOXD3P31249 432 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-204ENST00000367248 FAM90A2PQ658T7 463 aa9.18□□□□□ -0.94
SYNE1-204ENST00000367248 LINC00518Q8N0U6 118 aa9.18□□□□□ -0.94
SYNE1-204ENST00000367248 D6R8Y8 96 aa9.18□□□□□ -0.94
SYNE1-204ENST00000367248 AMBPP02760 352 aa9.18□□□□□ -0.94
SYNE1-204ENST00000367248 MRPL27Q9P0M9 148 aaKnown RBP9.18□□□□□ -0.94
SYNE1-204ENST00000367248 PIFOQ8TCI5 191 aa9.18□□□□□ -0.94
SYNE1-204ENST00000367248 GP9P14770 177 aa9.18□□□□□ -0.94
SYNE1-204ENST00000367248 CD300EQ496F6 205 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-204ENST00000367248 MYLKQ15746 1914 aa9.18□□□□□ -0.94
SYNE1-204ENST00000367248 LYPD6Q86Y78 171 aa9.18□□□□□ -0.94
SYNE1-204ENST00000367248 C14orf144Q96I85 54 aa9.18□□□□□ -0.94
SYNE1-204ENST00000367248 CXCL1P09341 107 aa9.17□□□□□ -0.94
SYNE1-204ENST00000367248 ARMS2P0C7Q2 107 aa9.17□□□□□ -0.94
SYNE1-204ENST00000367248 C6orf226Q5I0X4 101 aa9.17□□□□□ -0.94
SYNE1-204ENST00000367248 RBMY1BA6NDE4 496 aaKnown RBP9.17□□□□□ -0.94
SYNE1-204ENST00000367248 RBMY1EA6NEQ0 496 aaKnown RBP9.17□□□□□ -0.94
SYNE1-204ENST00000367248 SLC25A20O43772 301 aa9.17□□□□□ -0.94
SYNE1-204ENST00000367248 RBMY1DP0C7P1 496 aaKnown RBP9.17□□□□□ -0.94
SYNE1-204ENST00000367248 RBMY1A1P0DJD3 496 aaKnown RBP9.17□□□□□ -0.94
SYNE1-204ENST00000367248 RBMY1CP0DJD4 496 aa9.17□□□□□ -0.94
SYNE1-204ENST00000367248 RASL11AQ6T310 242 aa9.17□□□□□ -0.94
SYNE1-204ENST00000367248 IFI27L1Q96BM0 104 aa9.17□□□□□ -0.94
SYNE1-204ENST00000367248 CHCHD1Q96BP2 118 aaKnown RBP9.17□□□□□ -0.94
SYNE1-204ENST00000367248 DEFB4AO15263 64 aa9.17□□□□□ -0.94
SYNE1-204ENST00000367248 NIT1Q86X76 327 aa9.17□□□□□ -0.94
SYNE1-204ENST00000367248 H3BRN7 92 aa9.16□□□□□ -0.94
SYNE1-204ENST00000367248 NUP35Q8NFH5 326 aa9.16□□□□□ -0.94
SYNE1-204ENST00000367248 COLCA2A8K830 154 aa9.16□□□□□ -0.94
SYNE1-204ENST00000367248 JPT2Q9H910 190 aa9.16□□□□□ -0.94
SYNE1-204ENST00000367248 TRAV2A0A0B4J234 112 aa9.16□□□□□ -0.94
SYNE1-204ENST00000367248 IGLC7A0M8Q6 106 aa9.16□□□□□ -0.94
SYNE1-204ENST00000367248 MSMPQ1L6U9 139 aa9.16□□□□□ -0.94
SYNE1-204ENST00000367248 DPM2O94777 84 aa9.16□□□□□ -0.94
SYNE1-204ENST00000367248 PFN1P07737 140 aaKnown RBP9.16□□□□□ -0.94
SYNE1-204ENST00000367248 C9orf66Q5T8R8 295 aa9.16□□□□□ -0.94
SYNE1-204ENST00000367248 FNDC4Q9H6D8 234 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-204ENST00000367248 SMKR1H3BMG3 65 aa9.15□□□□□ -0.94
SYNE1-204ENST00000367248 VCYO14598 125 aa9.15□□□□□ -0.94
SYNE1-204ENST00000367248 TMEM14CQ9P0S9 112 aa9.15□□□□□ -0.94
SYNE1-204ENST00000367248 ZNF492Q9P255 531 aa9.15□□□□□ -0.94
SYNE1-204ENST00000367248 F6UB75 175 aa9.15□□□□□ -0.94
SYNE1-204ENST00000367248 IGHV7-4-1A0A0J9YVY3 117 aa9.15□□□□□ -0.94
SYNE1-204ENST00000367248 PAX4O43316 350 aa9.15□□□□□ -0.95
SYNE1-204ENST00000367248 IL15RAQ13261 267 aa9.15□□□□□ -0.95
SYNE1-204ENST00000367248 LAGE3Q14657 143 aa9.15□□□□□ -0.95
SYNE1-204ENST00000367248 THAP8Q8NA92 274 aa9.15□□□□□ -0.95
SYNE1-204ENST00000367248 NUP210Q8TEM1 1887 aaPredicted RBP9.15□□□□□ -0.95
SYNE1-204ENST00000367248 C2orf16Q68DN1 1984 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 PIEZO2Q9H5I5 2752 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 ZNF561-AS1K7EIQ3 104 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 HIST2H2BDQ6DRA6 164 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 IGKV1OR2-108A0A075B7D4 117 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 ZNF491Q8N8L2 437 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 TMEM75Q8N9X5 138 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 CSTL1Q9H114 145 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 MRPL16Q9NX20 251 aaKnown RBP9.14□□□□□ -0.95
SYNE1-204ENST00000367248 K7ERU9 68 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 CTAG1AP78358 180 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 GAGE6Q13070 117 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 CHTOPQ9Y3Y2 248 aaKnown RBP9.14□□□□□ -0.95
SYNE1-204ENST00000367248 A0A1B0GUS0 222 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 PRR20EP86478 221 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 PRR20CP86479 221 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 PRR20DP86480 221 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 PRR20BP86481 221 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 PRR20AP86496 221 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 LINC01559Q495D7 138 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 NOP10Q9NPE3 64 aaKnown RBP9.14□□□□□ -0.95
SYNE1-204ENST00000367248 RHODO00212 210 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 MS4A6AQ9H2W1 248 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 SMPXQ9UHP9 88 aa9.14□□□□□ -0.95
SYNE1-204ENST00000367248 GGTLC3B5MD39 225 aa9.13□□□□□ -0.95
SYNE1-204ENST00000367248 INS-IGF2F8WCM5 200 aa9.13□□□□□ -0.95
SYNE1-204ENST00000367248 SMIM13P0DJ93 91 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms