RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 C11orf94C9JXX5 98 aa12.17□□□□□ -0.46
CLN3-203ENST00000357806 H7BYZ3 331 aa12.17□□□□□ -0.46
CLN3-203ENST00000357806 J3KRW8 73 aa12.17□□□□□ -0.46
CLN3-203ENST00000357806 BCL2L11O43521 198 aa12.17□□□□□ -0.46
CLN3-203ENST00000357806 CXorf1O96002 111 aa12.17□□□□□ -0.46
CLN3-203ENST00000357806 SLC25A5P05141 298 aaKnown RBP12.17□□□□□ -0.46
CLN3-203ENST00000357806 SPART-AS1P0CW21 52 aa12.17□□□□□ -0.46
CLN3-203ENST00000357806 TAS2R60P59551 318 aa12.17□□□□□ -0.46
CLN3-203ENST00000357806 KIR3DS1Q14943 382 aa12.17□□□□□ -0.46
CLN3-203ENST00000357806 TCTE3Q8IZS6 198 aa12.17□□□□□ -0.46
CLN3-203ENST00000357806 CMTM2Q8TAZ6 248 aa12.17□□□□□ -0.46
CLN3-203ENST00000357806 CTXND1A0A1B0GTU2 59 aa12.16□□□□□ -0.46
CLN3-203ENST00000357806 PGPA6NDG6 321 aa12.16□□□□□ -0.46
CLN3-203ENST00000357806 GCHFRP30047 84 aa12.16□□□□□ -0.46
CLN3-203ENST00000357806 Q6ZTC4 211 aa12.16□□□□□ -0.46
CLN3-203ENST00000357806 FAM19A4Q96LR4 140 aa12.16□□□□□ -0.46
CLN3-203ENST00000357806 HYLS1Q96M11 299 aa12.16□□□□□ -0.46
CLN3-203ENST00000357806 VGLL1Q99990 258 aa12.16□□□□□ -0.46
CLN3-203ENST00000357806 TMEM167BQ9NRX6 74 aa12.16□□□□□ -0.46
CLN3-203ENST00000357806 YTHDF2Q9Y5A9 579 aaKnown RBP12.16□□□□□ -0.46
CLN3-203ENST00000357806 DIRC3C9JPN6 131 aa12.15□□□□□ -0.46
CLN3-203ENST00000357806 SSX7Q7RTT5 188 aa12.15□□□□□ -0.46
CLN3-203ENST00000357806 SUN5Q8TC36 379 aa12.15□□□□□ -0.46
CLN3-203ENST00000357806 NIPSNAP3BQ9BS92 247 aa12.15□□□□□ -0.46
CLN3-203ENST00000357806 ZNF471Q9BX82 626 aaPredicted RBP12.15□□□□□ -0.46
CLN3-203ENST00000357806 ZNF492Q9P255 531 aa12.15□□□□□ -0.46
CLN3-203ENST00000357806 DKK2Q9UBU2 259 aa12.15□□□□□ -0.46
CLN3-203ENST00000357806 TRAV12-3A0A0B4J271 114 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 KLLNB2CW77 178 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 PFDN1O60925 122 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 NMBP08949 121 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 HTN1P15515 57 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 CRISP2P16562 243 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 ZNF138P52744 262 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 C12orf74Q32Q52 190 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 FAM222AQ5U5X8 452 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 IQCF2Q8IXL9 164 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 ARL6IP6Q8N6S5 226 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 C16orf74Q96GX8 76 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 RPH3ALQ9UNE2 315 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 hCG_2014768A0A024R1R8 64 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 TRAV10A0A0B4J240 114 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 TRBV7-9A0A0J9YWB2 115 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 LCE6AA0A183 80 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 C7orf71A4D174 169 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 PRM2P04554 102 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 EIF5AP63241 154 aaKnown RBP12.14□□□□□ -0.47
CLN3-203ENST00000357806 ZNF726P1Q15940 193 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 TMUB2Q71RG4 321 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 ZNF767PQ75MW2 155 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 Q8TAT8 98 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 C2CD4CQ8TF44 421 aa12.14□□□□□ -0.47
CLN3-203ENST00000357806 TMEM263Q8WUH6 116 aaKnown RBP12.14□□□□□ -0.47
CLN3-203ENST00000357806 GPX1P07203 203 aa12.13□□□□□ -0.47
CLN3-203ENST00000357806 SEC11BP0C7V7 166 aa12.13□□□□□ -0.47
CLN3-203ENST00000357806 BTN1A1Q13410 526 aa12.13□□□□□ -0.47
CLN3-203ENST00000357806 AKAP14Q86UN6 197 aa12.13□□□□□ -0.47
CLN3-203ENST00000357806 PYGO2Q9BRQ0 406 aa12.13□□□□□ -0.47
CLN3-203ENST00000357806 DYNC2H1Q8NCM8 4307 aaKnown RBP12.13□□□□□ -0.47
CLN3-203ENST00000357806 AZU1P20160 251 aa12.12□□□□□ -0.47
CLN3-203ENST00000357806 ZNF493Q6ZR52 646 aa12.12□□□□□ -0.47
CLN3-203ENST00000357806 CCDC28AQ8IWP9 274 aa12.12□□□□□ -0.47
CLN3-203ENST00000357806 ZFAND2AQ8N6M9 145 aa12.12□□□□□ -0.47
CLN3-203ENST00000357806 C5orf17Q8NAS9 161 aa12.12□□□□□ -0.47
CLN3-203ENST00000357806 RNASE8Q8TDE3 154 aaKnown RBP12.12□□□□□ -0.47
CLN3-203ENST00000357806 TMED6Q8WW62 240 aa12.12□□□□□ -0.47
CLN3-203ENST00000357806 LENEPQ9Y5L5 61 aa12.12□□□□□ -0.47
CLN3-203ENST00000357806 SERTM2A0A1B0GWG4 89 aa12.11□□□□□ -0.47
CLN3-203ENST00000357806 LYRM9A8MSI8 78 aa12.11□□□□□ -0.47
CLN3-203ENST00000357806 C1QBP02746 253 aa12.11□□□□□ -0.47
CLN3-203ENST00000357806 TPT1P13693 172 aaKnown RBP12.11□□□□□ -0.47
CLN3-203ENST00000357806 CD300CQ08708 224 aa12.11□□□□□ -0.47
CLN3-203ENST00000357806 GOLT1AQ6ZVE7 132 aa12.11□□□□□ -0.47
CLN3-203ENST00000357806 DEFB131BA0A096LNP1 70 aa12.1□□□□□ -0.47
CLN3-203ENST00000357806 PLAC8L1A1L4L8 177 aa12.1□□□□□ -0.47
CLN3-203ENST00000357806 MAP1LC3B2A6NCE7 125 aa12.1□□□□□ -0.47
CLN3-203ENST00000357806 UMAD1C9J7I0 102 aa12.1□□□□□ -0.47
CLN3-203ENST00000357806 RNASE4P34096 147 aaKnown RBP12.1□□□□□ -0.47
CLN3-203ENST00000357806 FGF8P55075 233 aaPredicted RBP12.1□□□□□ -0.47
CLN3-203ENST00000357806 GNG5P63218 68 aa12.1□□□□□ -0.47
CLN3-203ENST00000357806 MAP1LC3BQ9GZQ8 125 aa12.1□□□□□ -0.47
CLN3-203ENST00000357806 PLECQ15149 4684 aaKnown RBP12.1□□□□□ -0.47
CLN3-203ENST00000357806 A0A1W2PRE2 83 aa12.09□□□□□ -0.47
CLN3-203ENST00000357806 GGTLC3B5MD39 225 aa12.09□□□□□ -0.47
CLN3-203ENST00000357806 ZNF324O75467 553 aaPredicted RBP12.09□□□□□ -0.47
CLN3-203ENST00000357806 TCTAP57738 103 aa12.09□□□□□ -0.47
CLN3-203ENST00000357806 DAD1P61803 113 aa12.09□□□□□ -0.47
CLN3-203ENST00000357806 PRR9Q5T870 116 aa12.09□□□□□ -0.47
CLN3-203ENST00000357806 STOML3Q8TAV4 291 aa12.09□□□□□ -0.47
CLN3-203ENST00000357806 TIMM8BQ9Y5J9 83 aaPredicted RBP12.09□□□□□ -0.47
CLN3-203ENST00000357806 IGLL5B9A064 214 aa12.08□□□□□ -0.47
CLN3-203ENST00000357806 K7EQM0 130 aa12.08□□□□□ -0.47
CLN3-203ENST00000357806 SUMO1P63165 101 aaKnown RBP12.08□□□□□ -0.47
CLN3-203ENST00000357806 TMPRSS5Q9H3S3 457 aa12.08□□□□□ -0.47
CLN3-203ENST00000357806 SNURFLB1AK76 121 aa12.08□□□□□ -0.48
CLN3-203ENST00000357806 TCRAP04437 139 aa12.08□□□□□ -0.48
CLN3-203ENST00000357806 LGALSLQ3ZCW2 172 aaPredicted RBP12.08□□□□□ -0.48
CLN3-203ENST00000357806 DPPA3Q6W0C5 159 aa12.08□□□□□ -0.48
CLN3-203ENST00000357806 ZNF680Q8NEM1 530 aa12.08□□□□□ -0.48
CLN3-203ENST00000357806 LINC00467Q9BRT7 94 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms