RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 NF1P21359 2839 aa11.74□□□□□ -0.53
LIMS1-202ENST00000338045 FBLL1A6NHQ2 334 aaKnown RBP11.74□□□□□ -0.53
LIMS1-202ENST00000338045 SOCS3O14543 225 aa11.74□□□□□ -0.53
LIMS1-202ENST00000338045 ZNF25P17030 456 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-202ENST00000338045 EDN2P20800 178 aa11.74□□□□□ -0.53
LIMS1-202ENST00000338045 SYNJ2BPP57105 145 aa11.74□□□□□ -0.53
LIMS1-202ENST00000338045 FABP9Q0Z7S8 132 aa11.74□□□□□ -0.53
LIMS1-202ENST00000338045 IBA57Q5T440 356 aaKnown RBP11.74□□□□□ -0.53
LIMS1-202ENST00000338045 PRNTQ86SH4 94 aa11.74□□□□□ -0.53
LIMS1-202ENST00000338045 MRPL52Q86TS9 123 aaKnown RBP11.74□□□□□ -0.53
LIMS1-202ENST00000338045 IGKV2-40A0A087WW87 121 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-202ENST00000338045 ZNF705FA8MVS1 300 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-202ENST00000338045 TMEM238C9JI98 176 aa11.72□□□□□ -0.53
LIMS1-202ENST00000338045 LINC01619G3V211 115 aa11.72□□□□□ -0.53
LIMS1-202ENST00000338045 IGKV2D-40P01614 121 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-202ENST00000338045 KCNIP4Q6PIL6 250 aa11.72□□□□□ -0.53
LIMS1-202ENST00000338045 RNF182Q8N6D2 247 aa11.72□□□□□ -0.53
LIMS1-202ENST00000338045 NRN1Q9NPD7 142 aa11.72□□□□□ -0.53
LIMS1-202ENST00000338045 IL36BQ9NZH7 164 aa11.72□□□□□ -0.53
LIMS1-202ENST00000338045 ZNF492Q9P255 531 aa11.72□□□□□ -0.53
LIMS1-202ENST00000338045 FLNBO75369 2602 aaKnown RBP11.72□□□□□ -0.53
LIMS1-202ENST00000338045 RBAKDNA6NC62 111 aa11.72□□□□□ -0.53
LIMS1-202ENST00000338045 DEFB136Q30KP8 78 aa11.72□□□□□ -0.53
LIMS1-202ENST00000338045 KLHL30-AS1Q8NEE0 82 aa11.72□□□□□ -0.53
LIMS1-202ENST00000338045 OR11H1Q8NG94 326 aa11.72□□□□□ -0.53
LIMS1-202ENST00000338045 C16orf92Q96LL3 132 aa11.72□□□□□ -0.53
LIMS1-202ENST00000338045 NDUFAF3Q9BU61 184 aa11.72□□□□□ -0.53
LIMS1-202ENST00000338045 C19orf71A6NCJ1 209 aa11.71□□□□□ -0.53
LIMS1-202ENST00000338045 PRB4P10163 310 aaPredicted RBP11.71□□□□□ -0.53
LIMS1-202ENST00000338045 KHDC1LQ5JSQ8 128 aa11.71□□□□□ -0.53
LIMS1-202ENST00000338045 LINC00322Q6ZN03 302 aaPredicted RBP11.71□□□□□ -0.53
LIMS1-202ENST00000338045 COX8CQ7Z4L0 72 aa11.71□□□□□ -0.53
LIMS1-202ENST00000338045 OR1N2Q8NGR9 330 aa11.71□□□□□ -0.53
LIMS1-202ENST00000338045 NUDT11Q96G61 164 aa11.71□□□□□ -0.53
LIMS1-202ENST00000338045 TMEM208Q9BTX3 173 aa11.71□□□□□ -0.53
LIMS1-202ENST00000338045 NSD1Q96L73 2696 aaPredicted RBP11.71□□□□□ -0.54
LIMS1-202ENST00000338045 XKRY2A2RUG3 117 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 C2orf70A6NJV1 201 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 PRAC2D3DTV9 90 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 TCF21O43680 179 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 CRLF1O75462 422 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 PPBPP02775 128 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 CD28P10747 220 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 SLURP1P55000 103 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 FAM3BP58499 235 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-202ENST00000338045 PRR27Q6MZM9 219 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 TCF24Q7RTU0 167 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 DPF1Q92782 380 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 VGLL1Q99990 258 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 FN1P02751 2386 aaKnown RBP11.7□□□□□ -0.54
LIMS1-202ENST00000338045 TRAV9-1A0A075B6T8 112 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 CBLN1P23435 193 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 PROK1P58294 105 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 ZFP82Q8N141 532 aa11.7□□□□□ -0.54
LIMS1-202ENST00000338045 ZNF705GA8MUZ8 300 aaPredicted RBP11.69□□□□□ -0.54
LIMS1-202ENST00000338045 TYMSP04818 313 aa11.69□□□□□ -0.54
LIMS1-202ENST00000338045 SAMD13Q5VXD3 122 aa11.69□□□□□ -0.54
LIMS1-202ENST00000338045 ZC2HC1AQ96GY0 325 aa11.69□□□□□ -0.54
LIMS1-202ENST00000338045 BTF3L4Q96K17 158 aa11.69□□□□□ -0.54
LIMS1-202ENST00000338045 NPIPB6E9PJ23 425 aa11.68□□□□□ -0.54
LIMS1-202ENST00000338045 RPS10P46783 165 aaKnown RBP11.68□□□□□ -0.54
LIMS1-202ENST00000338045 RPL11P62913 178 aaKnown RBP11.68□□□□□ -0.54
LIMS1-202ENST00000338045 DCANP1Q8TF63 244 aa11.68□□□□□ -0.54
LIMS1-202ENST00000338045 C20orf173Q96LM9 149 aa11.68□□□□□ -0.54
LIMS1-202ENST00000338045 CLUHP3Q96NS8 147 aa11.68□□□□□ -0.54
LIMS1-202ENST00000338045 PRR25Q96S07 402 aa11.68□□□□□ -0.54
LIMS1-202ENST00000338045 RNF114Q9Y508 228 aa11.68□□□□□ -0.54
LIMS1-202ENST00000338045 TSSC4Q9Y5U2 329 aaPredicted RBP11.68□□□□□ -0.54
LIMS1-202ENST00000338045 SMIM27A0A1W2PRY6 76 aa11.68□□□□□ -0.54
LIMS1-202ENST00000338045 S100A2P29034 98 aa11.68□□□□□ -0.54
LIMS1-202ENST00000338045 FHL3Q13643 280 aa11.68□□□□□ -0.54
LIMS1-202ENST00000338045 ADAMTSL5Q6ZMM2 481 aa11.68□□□□□ -0.54
LIMS1-202ENST00000338045 GBGT1Q8N5D6 347 aa11.68□□□□□ -0.54
LIMS1-202ENST00000338045 ASCL2Q99929 193 aa11.68□□□□□ -0.54
LIMS1-202ENST00000338045 CITED2Q99967 270 aaPredicted RBP11.68□□□□□ -0.54
LIMS1-202ENST00000338045 SRD5A3Q9H8P0 318 aa11.68□□□□□ -0.54
LIMS1-202ENST00000338045 CT83Q5H943 113 aa11.67□□□□□ -0.54
LIMS1-202ENST00000338045 PYY3Q5JQD4 70 aa11.67□□□□□ -0.54
LIMS1-202ENST00000338045 HIST2H2BDQ6DRA6 164 aa11.67□□□□□ -0.54
LIMS1-202ENST00000338045 C9orf47Q6ZRZ4 202 aa11.67□□□□□ -0.54
LIMS1-202ENST00000338045 C11orf44Q8N8P7 122 aa11.67□□□□□ -0.54
LIMS1-202ENST00000338045 OR9G4Q8NGQ1 327 aa11.67□□□□□ -0.54
LIMS1-202ENST00000338045 C8orf49Q96NF6 230 aa11.67□□□□□ -0.54
LIMS1-202ENST00000338045 DUX3Q96PT4 197 aa11.67□□□□□ -0.54
LIMS1-202ENST00000338045 HAX1O00165 279 aa11.66□□□□□ -0.54
LIMS1-202ENST00000338045 P01737 135 aa11.66□□□□□ -0.54
LIMS1-202ENST00000338045 CRIP1P50238 77 aa11.66□□□□□ -0.54
LIMS1-202ENST00000338045 ERCC8Q13216 396 aa11.66□□□□□ -0.54
LIMS1-202ENST00000338045 Q8TAT8 98 aa11.66□□□□□ -0.54
LIMS1-202ENST00000338045 DLX4Q92988 240 aaPredicted RBP11.66□□□□□ -0.54
LIMS1-202ENST00000338045 RAX2Q96IS3 184 aa11.66□□□□□ -0.54
LIMS1-202ENST00000338045 AGPAT4-IT1Q9H0P7 198 aa11.66□□□□□ -0.54
LIMS1-202ENST00000338045 RPP21Q9H633 154 aaKnown RBP11.66□□□□□ -0.54
LIMS1-202ENST00000338045 PEMTQ9UBM1 199 aa11.66□□□□□ -0.54
LIMS1-202ENST00000338045 IGKV3-7A0A075B6H7 116 aa11.66□□□□□ -0.54
LIMS1-202ENST00000338045 CA1P00915 261 aaPredicted RBP11.66□□□□□ -0.54
LIMS1-202ENST00000338045 ODF1Q14990 250 aa11.66□□□□□ -0.54
LIMS1-202ENST00000338045 ZNF738Q8NE65 137 aa11.66□□□□□ -0.54
LIMS1-202ENST00000338045 OR4B1Q8NGF8 309 aa11.66□□□□□ -0.54
LIMS1-202ENST00000338045 TSKUQ8WUA8 353 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms