RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 IGKV1D-37A0A075B6S9 117 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 A0A0B4J2C4 111 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 IGSF23A1L1A6 192 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 ZNF705FA8MVS1 300 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-201ENST00000326004 EEF1E1-BLOC1S5C9J1V9 151 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 FAAHO00519 579 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 LECT2O14960 151 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 EEF1E1O43324 174 aaKnown RBP1.58□□□□□ -2.16
HMGB1-201ENST00000326004 GSTZ1O43708 216 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-201ENST00000326004 HIST1H2BKO60814 126 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 SH2D1AO60880 128 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 S1PR2O95136 353 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 HIST1H2BJP06899 126 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 ZNF705DP0CH99 300 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-201ENST00000326004 ZNF705BP0CI00 300 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-201ENST00000326004 CD79AP11912 226 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 HRES1P13985 223 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 HIST1H2BOP23527 126 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 HIST1H2BBP33778 126 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 GABRA2P47869 451 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 GABRA4P48169 554 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 POLR2HP52434 150 aaKnown RBP1.58□□□□□ -2.16
HMGB1-201ENST00000326004 HIST1H2BDP58876 126 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 TBPL1P62380 186 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 HIST1H2BCP62807 126 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 EIF5AP63241 154 aaKnown RBP1.58□□□□□ -2.16
HMGB1-201ENST00000326004 EDDM3AQ14507 147 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 HIST2H2BEQ16778 126 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 IQCJQ1A5X6 159 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 ACOT6Q3I5F7 207 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-201ENST00000326004 DEFB134Q4QY38 66 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-201ENST00000326004 FAM201AQ5SY85 155 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 GLT8D1Q68CQ7 371 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 Q6ZQT7 251 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 RPRMLQ8N4K4 120 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 ZFAND2AQ8N6M9 145 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 C5orf17Q8NAS9 161 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 LY6G5BQ8NDX9 201 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 ZNF675Q8TD23 568 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 HIST1H2BHQ93079 126 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 TSLPQ969D9 159 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 ARL11Q969Q4 196 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 GPR146Q96CH1 333 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 MS4A6EQ96DS6 147 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 CIB3Q96Q77 187 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-201ENST00000326004 LYSMD1Q96S90 227 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 HIST1H2BNQ99877 126 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 HIST1H2BMQ99879 126 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 MRPL57Q9BQC6 102 aaKnown RBP1.58□□□□□ -2.16
HMGB1-201ENST00000326004 GINS3Q9BRX5 216 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 LINC00470Q9BZP3 86 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 OR8D2Q9GZM6 311 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 TXNL4BQ9NX01 149 aaKnown RBP1.58□□□□□ -2.16
HMGB1-201ENST00000326004 FKBP11Q9NYL4 201 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 OR5AC2Q9NZP5 309 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 OR5V1Q9UGF6 321 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 CACFD1Q9UGQ2 172 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 ANAPC10Q9UM13 185 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 PXMP4Q9Y6I8 212 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 R4GN34 69 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 U3KQK5 164 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 MXRA5Q9NR99 2828 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 BSNQ9UPA5 3926 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 VWFP04275 2813 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 PRRC2CQ9Y520 2896 aaKnown RBP1.57□□□□□ -2.16
HMGB1-201ENST00000326004 RYR1P21817 5038 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 FOCADQ5VW36 1801 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 ODAMA1E959 279 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 ARL5CA6NH57 179 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 HMSDA8MTL9 139 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 GNGT2O14610 69 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 GEMIN2O14893 280 aaKnown RBP1.57□□□□□ -2.16
HMGB1-201ENST00000326004 APOMO95445 188 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 HAND1O96004 215 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 TRGC2P03986 189 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 HLA-DQB2P05538 268 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 CTSDP07339 412 aaPredicted RBP1.57□□□□□ -2.16
HMGB1-201ENST00000326004 CD14P08571 375 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 CD7P09564 240 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 TRGC1P0CF51 173 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 SDC2P34741 201 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 CCR2P41597 374 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 GZMMP51124 257 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 GNG3P63215 75 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 RHOGP84095 191 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 RUNX1Q01196 453 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 PLCXD2Q0VAA5 305 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 RHEBQ15382 184 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 HMGN3Q15651 99 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 MRPL51Q4U2R6 128 aaKnown RBP1.57□□□□□ -2.16
HMGB1-201ENST00000326004 TMEM97Q5BJF2 176 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 TMEM128Q5BJH2 165 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 AMMECR1LQ6DCA0 310 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 EIF5AL1Q6IS14 154 aaKnown RBP1.57□□□□□ -2.16
HMGB1-201ENST00000326004 RPL22L1Q6P5R6 122 aaKnown RBP1.57□□□□□ -2.16
HMGB1-201ENST00000326004 TOMM20LQ6UXN7 152 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 TMEM91Q6ZNR0 172 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 UMODL1-AS1Q8N2C9 162 aa1.57□□□□□ -2.16
HMGB1-201ENST00000326004 C3orf56Q8N813 242 aa1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms