RNA–Protein interactions for RNA: ENST00000320876.10

SMCHD1-201, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMCHD1, Length 8,821 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-201ENST00000320876 hADV29S1A0JD25 119 aa13.69□□□□□ -0.22
SMCHD1-201ENST00000320876 SIVA1O15304 175 aa13.69□□□□□ -0.22
SMCHD1-201ENST00000320876 TAL2Q16559 108 aa13.69□□□□□ -0.22
SMCHD1-201ENST00000320876 HAMPP81172 84 aa13.69□□□□□ -0.22
SMCHD1-201ENST00000320876 IGLC2P0DOY2 106 aa13.68□□□□□ -0.22
SMCHD1-201ENST00000320876 IGLC3P0DOY3 106 aa13.68□□□□□ -0.22
SMCHD1-201ENST00000320876 CSRP2Q16527 193 aa13.68□□□□□ -0.22
SMCHD1-201ENST00000320876 CARD19Q96LW7 228 aa13.68□□□□□ -0.22
SMCHD1-201ENST00000320876 C2orf66Q6UXQ4 117 aa13.68□□□□□ -0.22
SMCHD1-201ENST00000320876 ZCCHC24Q8N2G6 241 aaKnown RBP13.68□□□□□ -0.22
SMCHD1-201ENST00000320876 SORL1Q92673 2214 aa13.68□□□□□ -0.22
SMCHD1-201ENST00000320876 RNASE2P10153 161 aaKnown RBP13.67□□□□□ -0.22
SMCHD1-201ENST00000320876 Q6ZWC4 215 aa13.67□□□□□ -0.22
SMCHD1-201ENST00000320876 AGRNO00468 2067 aa13.67□□□□□ -0.22
SMCHD1-201ENST00000320876 LGALS9BQ3B8N2 356 aa13.67□□□□□ -0.22
SMCHD1-201ENST00000320876 LGALS9CQ6DKI2 356 aa13.67□□□□□ -0.22
SMCHD1-201ENST00000320876 C8orf49Q96NF6 230 aa13.67□□□□□ -0.22
SMCHD1-201ENST00000320876 HLA-DRB4P13762 266 aa13.67□□□□□ -0.22
SMCHD1-201ENST00000320876 Q6P435 159 aa13.67□□□□□ -0.22
SMCHD1-201ENST00000320876 HLA-DRB4X5D2U9 266 aa13.67□□□□□ -0.22
SMCHD1-201ENST00000320876 GAGE12JA6NER3 117 aa13.66□□□□□ -0.22
SMCHD1-201ENST00000320876 GAGE7O76087 117 aa13.66□□□□□ -0.22
SMCHD1-201ENST00000320876 GAGE12FP0CL80 117 aa13.66□□□□□ -0.22
SMCHD1-201ENST00000320876 GAGE12GP0CL81 117 aa13.66□□□□□ -0.22
SMCHD1-201ENST00000320876 GAGE12IP0CL82 117 aa13.66□□□□□ -0.22
SMCHD1-201ENST00000320876 RBM3P98179 157 aaKnown RBP13.66□□□□□ -0.22
SMCHD1-201ENST00000320876 GAGE4Q13068 117 aa13.66□□□□□ -0.22
SMCHD1-201ENST00000320876 PIP4P2Q8N4L2 257 aa13.66□□□□□ -0.22
SMCHD1-201ENST00000320876 SHISA9B4DS77 424 aa13.66□□□□□ -0.22
SMCHD1-201ENST00000320876 KLHL30-AS1Q8NEE0 82 aa13.66□□□□□ -0.22
SMCHD1-201ENST00000320876 GAGE5Q13069 117 aa13.66□□□□□ -0.22
SMCHD1-201ENST00000320876 GAGE6Q13070 117 aa13.66□□□□□ -0.22
SMCHD1-201ENST00000320876 ZNF672Q499Z4 452 aaPredicted RBP13.66□□□□□ -0.22
SMCHD1-201ENST00000320876 LINC00527Q9UJ94 153 aa13.66□□□□□ -0.22
SMCHD1-201ENST00000320876 TANC1Q9C0D5 1861 aa13.65□□□□□ -0.22
SMCHD1-201ENST00000320876 LYNX1G3V0Z9 82 aa13.65□□□□□ -0.22
SMCHD1-201ENST00000320876 H3BMG7 143 aa13.65□□□□□ -0.22
SMCHD1-201ENST00000320876 LYNX1P0DP58 116 aa13.65□□□□□ -0.22
SMCHD1-201ENST00000320876 BVES-AS1Q5T3Y7 98 aa13.65□□□□□ -0.22
SMCHD1-201ENST00000320876 LINC00479Q96M42 142 aa13.65□□□□□ -0.22
SMCHD1-201ENST00000320876 C20orf204Q6ZNR8 217 aa13.65□□□□□ -0.22
SMCHD1-201ENST00000320876 RHPN1-AS1Q9BWJ2 59 aa13.65□□□□□ -0.22
SMCHD1-201ENST00000320876 SPG11Q96JI7 2443 aa13.65□□□□□ -0.22
SMCHD1-201ENST00000320876 EPOPA6NHQ4 379 aa13.65□□□□□ -0.22
SMCHD1-201ENST00000320876 C10orf91Q5T1B1 145 aa13.65□□□□□ -0.22
SMCHD1-201ENST00000320876 RNF166Q96A37 237 aaPredicted RBP13.65□□□□□ -0.22
SMCHD1-201ENST00000320876 HS3ST6Q96QI5 342 aa13.65□□□□□ -0.22
SMCHD1-201ENST00000320876 NDUFC2O95298 119 aa13.65□□□□□ -0.22
SMCHD1-201ENST00000320876 TRAV25A0A0B4J276 109 aa13.64□□□□□ -0.23
SMCHD1-201ENST00000320876 A0A1B0GUS0 222 aa13.64□□□□□ -0.23
SMCHD1-201ENST00000320876 F8VRH5 84 aa13.64□□□□□ -0.23
SMCHD1-201ENST00000320876 CFPP27918 469 aa13.64□□□□□ -0.23
SMCHD1-201ENST00000320876 CFHR1Q03591 330 aa13.64□□□□□ -0.23
SMCHD1-201ENST00000320876 MRPL51Q4U2R6 128 aaKnown RBP13.64□□□□□ -0.23
SMCHD1-201ENST00000320876 FOXG1P55316 489 aaPredicted RBP13.64□□□□□ -0.23
SMCHD1-201ENST00000320876 KLRD1Q13241 179 aa13.64□□□□□ -0.23
SMCHD1-201ENST00000320876 EFNA4P52798 201 aa13.64□□□□□ -0.23
SMCHD1-201ENST00000320876 FLVCR1-AS1Q8TAF5 88 aa13.64□□□□□ -0.23
SMCHD1-201ENST00000320876 DKK1O94907 266 aa13.64□□□□□ -0.23
SMCHD1-201ENST00000320876 GAFA1Q96PS6 74 aa13.64□□□□□ -0.23
SMCHD1-201ENST00000320876 NOTCH4Q99466 2003 aa13.64□□□□□ -0.23
SMCHD1-201ENST00000320876 IGKV1-16P04430 117 aa13.64□□□□□ -0.23
SMCHD1-201ENST00000320876 MSRB2Q9Y3D2 182 aa13.64□□□□□ -0.23
SMCHD1-201ENST00000320876 PFN2P35080 140 aa13.63□□□□□ -0.23
SMCHD1-201ENST00000320876 KLHDC3Q9BQ90 382 aa13.63□□□□□ -0.23
SMCHD1-201ENST00000320876 ACYP1P07311 99 aa13.63□□□□□ -0.23
SMCHD1-201ENST00000320876 C11orf44Q8N8P7 122 aa13.63□□□□□ -0.23
SMCHD1-201ENST00000320876 TMEM213A2RRL7 107 aa13.63□□□□□ -0.23
SMCHD1-201ENST00000320876 K7ERJ3 54 aa13.63□□□□□ -0.23
SMCHD1-201ENST00000320876 COL4A5P29400 1685 aa13.63□□□□□ -0.23
SMCHD1-201ENST00000320876 TRAV12-1A0A0B4J245 112 aa13.63□□□□□ -0.23
SMCHD1-201ENST00000320876 SCRT2Q9NQ03 307 aa13.63□□□□□ -0.23
SMCHD1-201ENST00000320876 COLQQ9Y215 455 aaPredicted RBP13.63□□□□□ -0.23
SMCHD1-201ENST00000320876 HERVK_113P63121 156 aa13.63□□□□□ -0.23
SMCHD1-201ENST00000320876 LINC01545Q5VT33 79 aa13.63□□□□□ -0.23
SMCHD1-201ENST00000320876 H3BUX3 64 aa13.63□□□□□ -0.23
SMCHD1-201ENST00000320876 CDKN1BP46527 198 aa13.62□□□□□ -0.23
SMCHD1-201ENST00000320876 NDUFA12Q9UI09 145 aa13.62□□□□□ -0.23
SMCHD1-201ENST00000320876 CYYR1Q96J86 154 aa13.62□□□□□ -0.23
SMCHD1-201ENST00000320876 FAM231DQ6ZW35 169 aa13.62□□□□□ -0.23
SMCHD1-201ENST00000320876 B4DSR2 109 aa13.62□□□□□ -0.23
SMCHD1-201ENST00000320876 DEFB130BP0DP73 79 aa13.62□□□□□ -0.23
SMCHD1-201ENST00000320876 DEFB130AP0DP74 79 aa13.62□□□□□ -0.23
SMCHD1-201ENST00000320876 POU2AF1Q16633 256 aa13.62□□□□□ -0.23
SMCHD1-201ENST00000320876 V9GYV3 84 aa13.62□□□□□ -0.23
SMCHD1-201ENST00000320876 SDHAF1A6NFY7 115 aa13.61□□□□□ -0.23
SMCHD1-201ENST00000320876 A0A1W2PPI3 338 aa13.61□□□□□ -0.23
SMCHD1-201ENST00000320876 K7EMI3 77 aa13.61□□□□□ -0.23
SMCHD1-201ENST00000320876 SIGLEC8Q9NYZ4 499 aa13.61□□□□□ -0.23
SMCHD1-201ENST00000320876 UBE2E2Q96LR5 201 aa13.61□□□□□ -0.23
SMCHD1-201ENST00000320876 TMEM243Q9BU79 118 aa13.61□□□□□ -0.23
SMCHD1-201ENST00000320876 RNF114Q9Y508 228 aa13.6□□□□□ -0.23
SMCHD1-201ENST00000320876 NUP210LQ5VU65 1888 aa13.6□□□□□ -0.23
SMCHD1-201ENST00000320876 IGHV2-5P01817 119 aa13.6□□□□□ -0.23
SMCHD1-201ENST00000320876 IGLL1P15814 213 aa13.6□□□□□ -0.23
SMCHD1-201ENST00000320876 IGFL4Q6B9Z1 124 aa13.6□□□□□ -0.23
SMCHD1-201ENST00000320876 IGKV1D-17A0A075B6S4 117 aa13.6□□□□□ -0.23
SMCHD1-201ENST00000320876 TMEM14CQ9P0S9 112 aa13.6□□□□□ -0.23
SMCHD1-201ENST00000320876 NTN3O00634 580 aaPredicted RBP13.59□□□□□ -0.23
SMCHD1-201ENST00000320876 YPEL3P61236 119 aaPredicted RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms