RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 GSKIPQ9P0R6 139 aa10.07□□□□□ -0.8
CCDC88B-201ENST00000301897 RCL1Q9Y2P8 373 aaKnown RBP10.07□□□□□ -0.8
CCDC88B-201ENST00000301897 LY96Q9Y6Y9 160 aa10.07□□□□□ -0.8
CCDC88B-201ENST00000301897 C7orf66A4D0T2 115 aa10.06□□□□□ -0.8
CCDC88B-201ENST00000301897 FAM229AH3BQW9 127 aa10.06□□□□□ -0.8
CCDC88B-201ENST00000301897 INPP1P49441 399 aa10.06□□□□□ -0.8
CCDC88B-201ENST00000301897 BAK1Q16611 211 aa10.06□□□□□ -0.8
CCDC88B-201ENST00000301897 LYPD5Q6UWN5 251 aa10.06□□□□□ -0.8
CCDC88B-201ENST00000301897 NEGR1Q7Z3B1 354 aa10.06□□□□□ -0.8
CCDC88B-201ENST00000301897 HHLA3Q9XRX5 114 aa10.06□□□□□ -0.8
CCDC88B-201ENST00000301897 FAT1Q14517 4588 aa10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 TRBV19A0A075B6N1 114 aa10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 L7N2F9 121 aa10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 RGS13O14921 159 aa10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 GPX1P07203 203 aa10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 CRISP2P16562 243 aa10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 EVI2AP22794 236 aa10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 GCSHP23434 173 aa10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 RNASE4P34096 147 aaKnown RBP10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 KRTAP10-1P60331 282 aa10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 VAMP2P63027 116 aa10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 SPANXN2Q5MJ10 180 aa10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 NRARPQ7Z6K4 114 aa10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 FAM19A4Q96LR4 140 aa10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 MSRB1Q9NZV6 116 aa10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 KLF12Q9Y4X4 402 aa10.05□□□□□ -0.8
CCDC88B-201ENST00000301897 MBPP02686 304 aaPredicted RBP10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 DNAH10OSP0CZ25 163 aa10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 HIST1H1EP10412 219 aaKnown RBP10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 RPL29P47914 159 aaKnown RBP10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 CRYBA4P53673 196 aa10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 CD300CQ08708 224 aa10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 ERCC8Q13216 396 aa10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 BTN1A1Q13410 526 aa10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 C10orf126Q8N4M7 172 aa10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 MITD1Q8WV92 249 aa10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 ARPC5LQ9BPX5 153 aa10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 C20orf85Q9H1P6 137 aa10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 UQCC1Q9NVA1 299 aa10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 TMEM14CQ9P0S9 112 aa10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 TIMM9Q9Y5J7 89 aa10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 TNFRSF18Q9Y5U5 241 aa10.04□□□□□ -0.8
CCDC88B-201ENST00000301897 TRAV5A0A0B4J249 113 aa10.03□□□□□ -0.8
CCDC88B-201ENST00000301897 M0R3E3 92 aa10.03□□□□□ -0.8
CCDC88B-201ENST00000301897 IGHV3-53P01767 116 aa10.03□□□□□ -0.8
CCDC88B-201ENST00000301897 FUSP35637 526 aaKnown RBP eCLIP10.03□□□□□ -0.8
CCDC88B-201ENST00000301897 ZNF846Q147U1 533 aa10.03□□□□□ -0.8
CCDC88B-201ENST00000301897 CNPY1Q3B7I2 92 aa10.03□□□□□ -0.8
CCDC88B-201ENST00000301897 TMEM78Q5T7P6 136 aa10.03□□□□□ -0.8
CCDC88B-201ENST00000301897 MIC13Q5XKP0 118 aa10.03□□□□□ -0.8
CCDC88B-201ENST00000301897 C9orf47Q6ZRZ4 202 aa10.03□□□□□ -0.8
CCDC88B-201ENST00000301897 AGPAT4-IT1Q9H0P7 198 aa10.03□□□□□ -0.8
CCDC88B-201ENST00000301897 AAMDCQ9H7C9 122 aa10.03□□□□□ -0.8
CCDC88B-201ENST00000301897 WDR83OSQ9Y284 106 aa10.03□□□□□ -0.8
CCDC88B-201ENST00000301897 IGHV1OR15-1A0A075B7D0 117 aa10.02□□□□□ -0.81
CCDC88B-201ENST00000301897 CENPXA8MT69 81 aa10.02□□□□□ -0.81
CCDC88B-201ENST00000301897 SRIP30626 198 aa10.02□□□□□ -0.81
CCDC88B-201ENST00000301897 BCAP31P51572 246 aa10.02□□□□□ -0.81
CCDC88B-201ENST00000301897 ZNF415Q09FC8 603 aa10.02□□□□□ -0.81
CCDC88B-201ENST00000301897 FHL2Q14192 279 aa10.02□□□□□ -0.81
CCDC88B-201ENST00000301897 TRIQKQ629K1 86 aa10.02□□□□□ -0.81
CCDC88B-201ENST00000301897 CHAC2Q8WUX2 184 aa10.02□□□□□ -0.81
CCDC88B-201ENST00000301897 PCNPQ8WW12 178 aaKnown RBP10.02□□□□□ -0.81
CCDC88B-201ENST00000301897 C8orf49Q96NF6 230 aa10.02□□□□□ -0.81
CCDC88B-201ENST00000301897 TMEM70Q9BUB7 260 aa10.02□□□□□ -0.81
CCDC88B-201ENST00000301897 MRPL32Q9BYC8 188 aaKnown RBP10.02□□□□□ -0.81
CCDC88B-201ENST00000301897 SLC39A9Q9NUM3 307 aa10.02□□□□□ -0.81
CCDC88B-201ENST00000301897 TRGV4A0A0C4DH28 118 aa10.01□□□□□ -0.81
CCDC88B-201ENST00000301897 TRBV7-9A0A0J9YWB2 115 aa10.01□□□□□ -0.81
CCDC88B-201ENST00000301897 PRAF2O60831 178 aa10.01□□□□□ -0.81
CCDC88B-201ENST00000301897 ORM1P02763 201 aa10.01□□□□□ -0.81
CCDC88B-201ENST00000301897 BTCP35070 178 aa10.01□□□□□ -0.81
CCDC88B-201ENST00000301897 CAV2P51636 162 aa10.01□□□□□ -0.81
CCDC88B-201ENST00000301897 Q6ZSN1 163 aa10.01□□□□□ -0.81
CCDC88B-201ENST00000301897 IQCF2Q8IXL9 164 aa10.01□□□□□ -0.81
CCDC88B-201ENST00000301897 NTN5Q8WTR8 489 aaPredicted RBP10.01□□□□□ -0.81
CCDC88B-201ENST00000301897 MRPL16Q9NX20 251 aaKnown RBP10.01□□□□□ -0.81
CCDC88B-201ENST00000301897 NDUFB4O95168 129 aa10□□□□□ -0.81
CCDC88B-201ENST00000301897 SMR3BP02814 79 aaPredicted RBP10□□□□□ -0.81
CCDC88B-201ENST00000301897 PVALBP20472 110 aaPredicted RBP10□□□□□ -0.81
CCDC88B-201ENST00000301897 S100A11P31949 105 aa10□□□□□ -0.81
CCDC88B-201ENST00000301897 HBG1P69891 147 aa10□□□□□ -0.81
CCDC88B-201ENST00000301897 HBG2P69892 147 aa10□□□□□ -0.81
CCDC88B-201ENST00000301897 VWC2Q2TAL6 325 aa10□□□□□ -0.81
CCDC88B-201ENST00000301897 SH2D6Q7Z4S9 175 aa10□□□□□ -0.81
CCDC88B-201ENST00000301897 ZFAND2AQ8N6M9 145 aa10□□□□□ -0.81
CCDC88B-201ENST00000301897 TXNDC17Q9BRA2 123 aa10□□□□□ -0.81
CCDC88B-201ENST00000301897 C11orf1Q9H5F2 150 aa10□□□□□ -0.81
CCDC88B-201ENST00000301897 BOLA1Q9Y3E2 137 aa10□□□□□ -0.81
CCDC88B-201ENST00000301897 E5RGE8 158 aa9.99□□□□□ -0.81
CCDC88B-201ENST00000301897 K7EQD1 137 aa9.99□□□□□ -0.81
CCDC88B-201ENST00000301897 CST7O76096 145 aa9.99□□□□□ -0.81
CCDC88B-201ENST00000301897 CRYGDP07320 174 aa9.99□□□□□ -0.81
CCDC88B-201ENST00000301897 BAXQ07812 192 aa9.99□□□□□ -0.81
CCDC88B-201ENST00000301897 OR10G4Q8NGN3 311 aa9.99□□□□□ -0.81
CCDC88B-201ENST00000301897 BLNKQ8WV28 456 aa9.99□□□□□ -0.81
CCDC88B-201ENST00000301897 TP53TG3Q9ULZ0 132 aa9.99□□□□□ -0.81
CCDC88B-201ENST00000301897 LSM5Q9Y4Y9 91 aaKnown RBP9.99□□□□□ -0.81
CCDC88B-201ENST00000301897 FAM24AA6NFZ4 105 aa9.98□□□□□ -0.81
CCDC88B-201ENST00000301897 A6NHS1 94 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms