RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 V9GYV3 84 aa10.97□□□□□ -0.65
C9orf3-202ENST00000297979 TMEM89A2RUT3 159 aa10.97□□□□□ -0.65
C9orf3-202ENST00000297979 NDUFA4O00483 81 aa10.97□□□□□ -0.65
C9orf3-202ENST00000297979 LTAP01374 205 aa10.97□□□□□ -0.65
C9orf3-202ENST00000297979 IBA57Q5T440 356 aaKnown RBP10.97□□□□□ -0.65
C9orf3-202ENST00000297979 PRR27Q6MZM9 219 aa10.97□□□□□ -0.65
C9orf3-202ENST00000297979 IL36BQ9NZH7 164 aa10.97□□□□□ -0.65
C9orf3-202ENST00000297979 ZNF207O43670 478 aaKnown RBP10.96□□□□□ -0.65
C9orf3-202ENST00000297979 ZNF253O75346 499 aa10.96□□□□□ -0.65
C9orf3-202ENST00000297979 TCF24Q7RTU0 167 aa10.96□□□□□ -0.65
C9orf3-202ENST00000297979 U3KQE9 123 aa10.96□□□□□ -0.65
C9orf3-202ENST00000297979 A0A087X0K7 114 aa10.96□□□□□ -0.66
C9orf3-202ENST00000297979 CD5LO43866 347 aa10.96□□□□□ -0.66
C9orf3-202ENST00000297979 KRTAP1-1Q07627 177 aa10.96□□□□□ -0.66
C9orf3-202ENST00000297979 Q86TA4 180 aa10.96□□□□□ -0.66
C9orf3-202ENST00000297979 HIST3H2BBQ8N257 126 aa10.96□□□□□ -0.66
C9orf3-202ENST00000297979 BTF3L4Q96K17 158 aa10.96□□□□□ -0.66
C9orf3-202ENST00000297979 SRD5A3Q9H8P0 318 aa10.96□□□□□ -0.66
C9orf3-202ENST00000297979 IGHV3-66A0A0C4DH42 116 aa10.95□□□□□ -0.66
C9orf3-202ENST00000297979 ZNF705AQ6ZN79 300 aaPredicted RBP10.95□□□□□ -0.66
C9orf3-202ENST00000297979 DUX5Q96PT3 197 aa10.95□□□□□ -0.66
C9orf3-202ENST00000297979 TEX15Q9BXT5 2789 aa10.95□□□□□ -0.66
C9orf3-202ENST00000297979 APOHP02749 345 aaPredicted RBP10.95□□□□□ -0.66
C9orf3-202ENST00000297979 TRGC2P03986 189 aa10.95□□□□□ -0.66
C9orf3-202ENST00000297979 SLC35B1P78383 322 aa10.95□□□□□ -0.66
C9orf3-202ENST00000297979 RPEL1Q2QD12 228 aa10.95□□□□□ -0.66
C9orf3-202ENST00000297979 FAM231DQ6ZW35 169 aa10.95□□□□□ -0.66
C9orf3-202ENST00000297979 TMEM75Q8N9X5 138 aa10.95□□□□□ -0.66
C9orf3-202ENST00000297979 MLST8Q9BVC4 326 aa10.95□□□□□ -0.66
C9orf3-202ENST00000297979 TRAV8-1A0A0A6YYK1 113 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 TRBV6-1A0A0K0K1D8 114 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 ZNF785A8K8V0 405 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 OR11H12B2RN74 326 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 DIRC3C9JPN6 131 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 M0R3E3 92 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 IGLV2-11P01706 119 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 TYMSP04818 313 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 CSN1S1P47710 185 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 C10orf99Q6UWK7 81 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 TMEM86BQ8N661 226 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 OR11H1Q8NG94 326 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 OR11H2Q8NH07 326 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 IGHV3OR16-13A0A075B7E8 117 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 IGHV3-49A0A0A0MS15 119 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 IGHV3-74A0A0B4J1X5 117 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 ZNF705GA8MUZ8 300 aaPredicted RBP10.94□□□□□ -0.66
C9orf3-202ENST00000297979 UNQ9165/PRO28630Q6UXU0 137 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 TRAV9-1A0A075B6T8 112 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 GFI1BQ5VTD9 330 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 SERTAD4Q9NUC0 356 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 UFC1Q9Y3C8 167 aa10.94□□□□□ -0.66
C9orf3-202ENST00000297979 PRNTQ86SH4 94 aa10.93□□□□□ -0.66
C9orf3-202ENST00000297979 ZNF331Q9NQX6 463 aaPredicted RBP10.93□□□□□ -0.66
C9orf3-202ENST00000297979 FOXE3Q13461 319 aa10.93□□□□□ -0.66
C9orf3-202ENST00000297979 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.93□□□□□ -0.66
C9orf3-202ENST00000297979 TMEM183AQ8IXX5 376 aa10.93□□□□□ -0.66
C9orf3-202ENST00000297979 Q8N2B8 174 aa10.93□□□□□ -0.66
C9orf3-202ENST00000297979 CCDC168Q8NDH2 2452 aa10.93□□□□□ -0.66
C9orf3-202ENST00000297979 ZNF469Q96JG9 3925 aaPredicted RBP10.92□□□□□ -0.66
C9orf3-202ENST00000297979 MRPL23Q16540 153 aaKnown RBP10.92□□□□□ -0.66
C9orf3-202ENST00000297979 UNC79Q9P2D8 2635 aa10.92□□□□□ -0.66
C9orf3-202ENST00000297979 ELANEP08246 267 aa10.92□□□□□ -0.66
C9orf3-202ENST00000297979 SLC50A1Q9BRV3 221 aa10.92□□□□□ -0.66
C9orf3-202ENST00000297979 PSG8Q9UQ74 426 aa10.92□□□□□ -0.66
C9orf3-202ENST00000297979 GCN1Q92616 2671 aaKnown RBP10.92□□□□□ -0.66
C9orf3-202ENST00000297979 ZNF492Q9P255 531 aa10.91□□□□□ -0.66
C9orf3-202ENST00000297979 PRB4P10163 310 aaPredicted RBP10.9□□□□□ -0.66
C9orf3-202ENST00000297979 IGFL4Q6B9Z1 124 aa10.9□□□□□ -0.66
C9orf3-202ENST00000297979 OR1N2Q8NGR9 330 aa10.9□□□□□ -0.66
C9orf3-202ENST00000297979 MYOZ3Q8TDC0 251 aa10.9□□□□□ -0.66
C9orf3-202ENST00000297979 FLNAP21333 2647 aaKnown RBP10.9□□□□□ -0.66
C9orf3-202ENST00000297979 SMIM27A0A1W2PRY6 76 aa10.9□□□□□ -0.66
C9orf3-202ENST00000297979 CHEK1O14757 476 aa10.9□□□□□ -0.66
C9orf3-202ENST00000297979 AZU1P20160 251 aa10.9□□□□□ -0.66
C9orf3-202ENST00000297979 HLA-DMBP28068 263 aa10.9□□□□□ -0.66
C9orf3-202ENST00000297979 FRZBQ92765 325 aa10.9□□□□□ -0.66
C9orf3-202ENST00000297979 GRAMD2BQ96HH9 432 aa10.9□□□□□ -0.66
C9orf3-202ENST00000297979 MXRA5Q9NR99 2828 aa10.9□□□□□ -0.67
C9orf3-202ENST00000297979 DNAJC9-AS1A6NH13 148 aa10.9□□□□□ -0.67
C9orf3-202ENST00000297979 HIST1H2BKO60814 126 aa10.9□□□□□ -0.67
C9orf3-202ENST00000297979 CA1P00915 261 aaPredicted RBP10.9□□□□□ -0.67
C9orf3-202ENST00000297979 HIST1H2BJP06899 126 aa10.9□□□□□ -0.67
C9orf3-202ENST00000297979 HIST1H2BOP23527 126 aa10.9□□□□□ -0.67
C9orf3-202ENST00000297979 HIST1H2BBP33778 126 aa10.9□□□□□ -0.67
C9orf3-202ENST00000297979 HIST1H2BDP58876 126 aa10.9□□□□□ -0.67
C9orf3-202ENST00000297979 RPS20P60866 119 aaKnown RBP10.9□□□□□ -0.67
C9orf3-202ENST00000297979 HIST1H2BCP62807 126 aa10.9□□□□□ -0.67
C9orf3-202ENST00000297979 HIST2H2BEQ16778 126 aa10.9□□□□□ -0.67
C9orf3-202ENST00000297979 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.9□□□□□ -0.67
C9orf3-202ENST00000297979 LINC00322Q6ZN03 302 aaPredicted RBP10.9□□□□□ -0.67
C9orf3-202ENST00000297979 HIST1H2BHQ93079 126 aa10.9□□□□□ -0.67
C9orf3-202ENST00000297979 HIST1H2BNQ99877 126 aa10.9□□□□□ -0.67
C9orf3-202ENST00000297979 HIST1H2BMQ99879 126 aa10.9□□□□□ -0.67
C9orf3-202ENST00000297979 IGKV2-40A0A087WW87 121 aaPredicted RBP10.89□□□□□ -0.67
C9orf3-202ENST00000297979 A0A1B0GUS0 222 aa10.89□□□□□ -0.67
C9orf3-202ENST00000297979 A0A1W2PS18 150 aa10.89□□□□□ -0.67
C9orf3-202ENST00000297979 C19orf71A6NCJ1 209 aa10.89□□□□□ -0.67
C9orf3-202ENST00000297979 IGKV2D-40P01614 121 aaPredicted RBP10.89□□□□□ -0.67
C9orf3-202ENST00000297979 TCL1AP56279 114 aa10.89□□□□□ -0.67
C9orf3-202ENST00000297979 ACTL10Q5JWF8 245 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms