RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 GFI1BQ5VTD9 330 aa9.6□□□□□ -0.87
VPS28-201ENST00000292510 C9orf47Q6ZRZ4 202 aa9.6□□□□□ -0.87
VPS28-201ENST00000292510 ZNF767PQ75MW2 155 aa9.6□□□□□ -0.87
VPS28-201ENST00000292510 AKAP14Q86UN6 197 aa9.6□□□□□ -0.87
VPS28-201ENST00000292510 IQCF2Q8IXL9 164 aa9.6□□□□□ -0.87
VPS28-201ENST00000292510 LINC00477Q96M19 166 aa9.6□□□□□ -0.87
VPS28-201ENST00000292510 OTORQ9NRC9 128 aa9.6□□□□□ -0.87
VPS28-201ENST00000292510 RPH3ALQ9UNE2 315 aa9.6□□□□□ -0.87
VPS28-201ENST00000292510 LYSTQ99698 3801 aa9.6□□□□□ -0.87
VPS28-201ENST00000292510 CTXND1A0A1B0GTU2 59 aa9.59□□□□□ -0.87
VPS28-201ENST00000292510 CXorf1O96002 111 aa9.59□□□□□ -0.87
VPS28-201ENST00000292510 C1QBP02746 253 aa9.59□□□□□ -0.87
VPS28-201ENST00000292510 TSPOP30536 169 aa9.59□□□□□ -0.87
VPS28-201ENST00000292510 LEPP41159 167 aa9.59□□□□□ -0.87
VPS28-201ENST00000292510 CSN1S1P47710 185 aa9.59□□□□□ -0.87
VPS28-201ENST00000292510 FHITP49789 147 aa9.59□□□□□ -0.87
VPS28-201ENST00000292510 FGF8P55075 233 aaPredicted RBP9.59□□□□□ -0.87
VPS28-201ENST00000292510 GNG5P63218 68 aa9.59□□□□□ -0.87
VPS28-201ENST00000292510 LGALSLQ3ZCW2 172 aaPredicted RBP9.59□□□□□ -0.87
VPS28-201ENST00000292510 Q8TAT8 98 aa9.59□□□□□ -0.87
VPS28-201ENST00000292510 FAM19A4Q96LR4 140 aa9.59□□□□□ -0.87
VPS28-201ENST00000292510 ODF3Q96PU9 254 aa9.59□□□□□ -0.87
VPS28-201ENST00000292510 LINC01587Q99440 93 aa9.59□□□□□ -0.87
VPS28-201ENST00000292510 TMPRSS5Q9H3S3 457 aa9.59□□□□□ -0.87
VPS28-201ENST00000292510 TRAV12-3A0A0B4J271 114 aa9.58□□□□□ -0.88
VPS28-201ENST00000292510 DIRC3C9JPN6 131 aa9.58□□□□□ -0.88
VPS28-201ENST00000292510 HTN1P15515 57 aa9.58□□□□□ -0.88
VPS28-201ENST00000292510 AZU1P20160 251 aa9.58□□□□□ -0.88
VPS28-201ENST00000292510 TMEM78Q5T7P6 136 aa9.58□□□□□ -0.88
VPS28-201ENST00000292510 CMTM2Q8TAZ6 248 aa9.58□□□□□ -0.88
VPS28-201ENST00000292510 SUN5Q8TC36 379 aa9.58□□□□□ -0.88
VPS28-201ENST00000292510 PHLDA1Q8WV24 401 aaPredicted RBP9.58□□□□□ -0.88
VPS28-201ENST00000292510 ZNF492Q9P255 531 aa9.58□□□□□ -0.88
VPS28-201ENST00000292510 RYR2Q92736 4967 aa9.57□□□□□ -0.88
VPS28-201ENST00000292510 SLC25A5P05141 298 aaKnown RBP9.57□□□□□ -0.88
VPS28-201ENST00000292510 SEC11BP0C7V7 166 aa9.57□□□□□ -0.88
VPS28-201ENST00000292510 BTN1A1Q13410 526 aa9.57□□□□□ -0.88
VPS28-201ENST00000292510 C12orf74Q32Q52 190 aa9.57□□□□□ -0.88
VPS28-201ENST00000292510 FAM74A1Q5RGS3 127 aa9.57□□□□□ -0.88
VPS28-201ENST00000292510 PRR9Q5T870 116 aa9.57□□□□□ -0.88
VPS28-201ENST00000292510 Q6ZTC4 211 aa9.57□□□□□ -0.88
VPS28-201ENST00000292510 GOLT1AQ6ZVE7 132 aa9.57□□□□□ -0.88
VPS28-201ENST00000292510 RXFP4Q8TDU9 374 aa9.57□□□□□ -0.88
VPS28-201ENST00000292510 TMEM167BQ9NRX6 74 aa9.57□□□□□ -0.88
VPS28-201ENST00000292510 YTHDF2Q9Y5A9 579 aaKnown RBP9.57□□□□□ -0.88
VPS28-201ENST00000292510 C7orf71A4D174 169 aa9.56□□□□□ -0.88
VPS28-201ENST00000292510 TMEM189A5PLL7 270 aa9.56□□□□□ -0.88
VPS28-201ENST00000292510 RBAKDNA6NC62 111 aa9.56□□□□□ -0.88
VPS28-201ENST00000292510 MAP1LC3B2A6NCE7 125 aa9.56□□□□□ -0.88
VPS28-201ENST00000292510 KLLNB2CW77 178 aa9.56□□□□□ -0.88
VPS28-201ENST00000292510 GGTLC3B5MD39 225 aa9.56□□□□□ -0.88
VPS28-201ENST00000292510 TPT1P13693 172 aaKnown RBP9.56□□□□□ -0.88
VPS28-201ENST00000292510 RNASE4P34096 147 aaKnown RBP9.56□□□□□ -0.88
VPS28-201ENST00000292510 ZNF138P52744 262 aa9.56□□□□□ -0.88
VPS28-201ENST00000292510 TAS2R60P59551 318 aa9.56□□□□□ -0.88
VPS28-201ENST00000292510 FAM222AQ5U5X8 452 aa9.56□□□□□ -0.88
VPS28-201ENST00000292510 CEMP1Q6PRD7 247 aaPredicted RBP9.56□□□□□ -0.88
VPS28-201ENST00000292510 Q6ZQT7 251 aa9.56□□□□□ -0.88
VPS28-201ENST00000292510 TMEM256Q8N2U0 113 aa9.56□□□□□ -0.88
VPS28-201ENST00000292510 ZFAND2AQ8N6M9 145 aa9.56□□□□□ -0.88
VPS28-201ENST00000292510 FAM213BQ8TBF2 198 aa9.56□□□□□ -0.88
VPS28-201ENST00000292510 TMED6Q8WW62 240 aa9.56□□□□□ -0.88
VPS28-201ENST00000292510 MAP1LC3BQ9GZQ8 125 aa9.56□□□□□ -0.88
VPS28-201ENST00000292510 TRAV8-1A0A0A6YYK1 113 aa9.55□□□□□ -0.88
VPS28-201ENST00000292510 PLAC8L1A1L4L8 177 aa9.55□□□□□ -0.88
VPS28-201ENST00000292510 NUPR2A6NF83 97 aa9.55□□□□□ -0.88
VPS28-201ENST00000292510 H7BYZ3 331 aa9.55□□□□□ -0.88
VPS28-201ENST00000292510 GPX1P07203 203 aa9.55□□□□□ -0.88
VPS28-201ENST00000292510 CRISP2P16562 243 aa9.55□□□□□ -0.88
VPS28-201ENST00000292510 UBE2G2P60604 165 aa9.55□□□□□ -0.88
VPS28-201ENST00000292510 SUMO1P63165 101 aaKnown RBP9.55□□□□□ -0.88
VPS28-201ENST00000292510 EIF5AP63241 154 aaKnown RBP9.55□□□□□ -0.88
VPS28-201ENST00000292510 SGK494Q96LW2 274 aa9.55□□□□□ -0.88
VPS28-201ENST00000292510 C20orf144Q9BQM9 153 aa9.55□□□□□ -0.88
VPS28-201ENST00000292510 NIPSNAP3BQ9BS92 247 aa9.55□□□□□ -0.88
VPS28-201ENST00000292510 DKK2Q9UBU2 259 aa9.55□□□□□ -0.88
VPS28-201ENST00000292510 ALMS1Q8TCU4 4167 aa9.54□□□□□ -0.88
VPS28-201ENST00000292510 DNAH1Q9P2D7 4330 aa9.54□□□□□ -0.88
VPS28-201ENST00000292510 A0A1B0GV50 99 aa9.54□□□□□ -0.88
VPS28-201ENST00000292510 ZNF324O75467 553 aaPredicted RBP9.54□□□□□ -0.88
VPS28-201ENST00000292510 SPART-AS1P0CW21 52 aa9.54□□□□□ -0.88
VPS28-201ENST00000292510 C5orf17Q8NAS9 161 aa9.54□□□□□ -0.88
VPS28-201ENST00000292510 STOML3Q8TAV4 291 aa9.54□□□□□ -0.88
VPS28-201ENST00000292510 UMAD1C9J7I0 102 aa9.53□□□□□ -0.88
VPS28-201ENST00000292510 TCRAP04437 139 aa9.53□□□□□ -0.88
VPS28-201ENST00000292510 C9orf62Q8N4C0 152 aa9.53□□□□□ -0.88
VPS28-201ENST00000292510 ARL6IP6Q8N6S5 226 aa9.53□□□□□ -0.88
VPS28-201ENST00000292510 RNASE8Q8TDE3 154 aaKnown RBP9.53□□□□□ -0.88
VPS28-201ENST00000292510 A0A1W2PRE2 83 aa9.52□□□□□ -0.89
VPS28-201ENST00000292510 FAM74A7A6NL05 159 aa9.52□□□□□ -0.89
VPS28-201ENST00000292510 NMBP08949 121 aa9.52□□□□□ -0.89
VPS28-201ENST00000292510 ZFP69Q49AA0 526 aa9.52□□□□□ -0.89
VPS28-201ENST00000292510 TMEM263Q8WUH6 116 aaKnown RBP9.52□□□□□ -0.89
VPS28-201ENST00000292510 SFT2D1Q8WV19 159 aa9.52□□□□□ -0.89
VPS28-201ENST00000292510 TVP23CQ96ET8 276 aa9.52□□□□□ -0.89
VPS28-201ENST00000292510 C16orf74Q96GX8 76 aa9.52□□□□□ -0.89
VPS28-201ENST00000292510 EPDR1Q9UM22 224 aa9.52□□□□□ -0.89
VPS28-201ENST00000292510 KLK5Q9Y337 293 aaPredicted RBP9.52□□□□□ -0.89
VPS28-201ENST00000292510 TRAV10A0A0B4J240 114 aa9.51□□□□□ -0.89
VPS28-201ENST00000292510 TRBV7-9A0A0J9YWB2 115 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 114.9 ms