RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 TNFRSF13BO14836 293 aaPredicted RBP8.11□□□□□ -1.11
UPF3B-201ENST00000276201 ARMS2P0C7Q2 107 aa8.11□□□□□ -1.11
UPF3B-201ENST00000276201 IGHV4-31P0DP07 118 aa8.11□□□□□ -1.11
UPF3B-201ENST00000276201 RPL27AP46776 148 aaKnown RBP8.11□□□□□ -1.11
UPF3B-201ENST00000276201 KIR3DS1Q14943 382 aa8.11□□□□□ -1.11
UPF3B-201ENST00000276201 TNFRSF14Q92956 283 aa8.11□□□□□ -1.11
UPF3B-201ENST00000276201 ZC2HC1AQ96GY0 325 aa8.11□□□□□ -1.11
UPF3B-201ENST00000276201 FN1P02751 2386 aaKnown RBP8.1□□□□□ -1.11
UPF3B-201ENST00000276201 A0A1W2PPM0 123 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 PPIAL4DF5H284 164 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 ZNF138P52744 262 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 DLX6P56179 175 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 SRSF2Q01130 221 aaKnown RBP8.1□□□□□ -1.11
UPF3B-201ENST00000276201 C10orf55Q5SWW7 151 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 FAM104BQ5XKR9 115 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 CCL17Q92583 94 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 SLC25A39Q9BZJ4 359 aaPredicted RBP8.1□□□□□ -1.11
UPF3B-201ENST00000276201 RPH3ALQ9UNE2 315 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 F11RQ9Y624 299 aaKnown RBP8.1□□□□□ -1.11
UPF3B-201ENST00000276201 NF1P21359 2839 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 TRBV19A0A075B6N1 114 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 HBDP02042 147 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 PSG3Q16557 428 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 TMEM200BQ69YZ2 307 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 PRNTQ86SH4 94 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 SRSF12Q8WXF0 261 aaKnown RBP8.1□□□□□ -1.11
UPF3B-201ENST00000276201 SGK494Q96LW2 274 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 SHANK2-AS3Q9BTD1 123 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 SIGLEC8Q9NYZ4 499 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 ZNRD1Q9P1U0 126 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 PSG8Q9UQ74 426 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 HIVEP2P31629 2446 aa8.1□□□□□ -1.11
UPF3B-201ENST00000276201 NAV3Q8IVL0 2385 aa8.09□□□□□ -1.11
UPF3B-201ENST00000276201 SONP18583 2426 aaKnown RBP8.09□□□□□ -1.11
UPF3B-201ENST00000276201 H3BRN7 92 aa8.09□□□□□ -1.11
UPF3B-201ENST00000276201 SAP30O75446 220 aa8.09□□□□□ -1.11
UPF3B-201ENST00000276201 TNFRSF1AP19438 455 aa8.09□□□□□ -1.11
UPF3B-201ENST00000276201 FOXE3Q13461 319 aa8.09□□□□□ -1.11
UPF3B-201ENST00000276201 GOLT1AQ6ZVE7 132 aa8.09□□□□□ -1.11
UPF3B-201ENST00000276201 RITA1Q96K30 269 aa8.09□□□□□ -1.11
UPF3B-201ENST00000276201 ZMAT4Q9H898 229 aa8.09□□□□□ -1.11
UPF3B-201ENST00000276201 PDE6HQ13956 83 aa8.08□□□□□ -1.12
UPF3B-201ENST00000276201 ORMDL3Q8N138 153 aa8.08□□□□□ -1.12
UPF3B-201ENST00000276201 H3BUT2 72 aa8.08□□□□□ -1.12
UPF3B-201ENST00000276201 SLC25A17O43808 307 aa8.08□□□□□ -1.12
UPF3B-201ENST00000276201 CSN3P07498 182 aa8.08□□□□□ -1.12
UPF3B-201ENST00000276201 IFI27P40305 119 aaPredicted RBP8.08□□□□□ -1.12
UPF3B-201ENST00000276201 RUSC1-AS1Q66K80 236 aa8.08□□□□□ -1.12
UPF3B-201ENST00000276201 SIGLEC15Q6ZMC9 328 aa8.08□□□□□ -1.12
UPF3B-201ENST00000276201 S100A7AQ86SG5 101 aa8.08□□□□□ -1.12
UPF3B-201ENST00000276201 PRELID3AQ96N28 172 aa8.08□□□□□ -1.12
UPF3B-201ENST00000276201 RNF5Q99942 180 aa8.08□□□□□ -1.12
UPF3B-201ENST00000276201 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.08□□□□□ -1.125e-7■■■■□ 24.2
UPF3B-201ENST00000276201 I3L2K1 104 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 MRPS12O15235 138 aaKnown RBP8.07□□□□□ -1.12
UPF3B-201ENST00000276201 LMO4P61968 165 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 DEFB108BQ8NET1 73 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 IFI27L1Q96BM0 104 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 TIMD4Q96H15 378 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 ZNF414Q96IQ9 312 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 MCRIP2Q9BUT9 160 aaKnown RBP8.07□□□□□ -1.12
UPF3B-201ENST00000276201 KAAG1Q9UBP8 84 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 INSIG2Q9Y5U4 225 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 NIPBLQ6KC79 2804 aaeCLIP8.07□□□□□ -1.12
UPF3B-201ENST00000276201 C2CD3Q4AC94 2353 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 MALRD1Q5VYJ5 2156 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 TEX22C9J3V5 150 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 INAFM1C9JVW0 142 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 TMEM178BH3BS89 294 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 FABP2P12104 132 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 CRIP1P50238 77 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 YAE1D1Q9NRH1 226 aa8.07□□□□□ -1.12
UPF3B-201ENST00000276201 TRAV8-1A0A0A6YYK1 113 aa8.06□□□□□ -1.12
UPF3B-201ENST00000276201 SMIM13P0DJ93 91 aa8.06□□□□□ -1.12
UPF3B-201ENST00000276201 CCL3L1P16619 93 aa8.06□□□□□ -1.12
UPF3B-201ENST00000276201 TMEM155Q4W5P6 130 aa8.06□□□□□ -1.12
UPF3B-201ENST00000276201 TPSG1Q9NRR2 321 aa8.06□□□□□ -1.12
UPF3B-201ENST00000276201 SMPXQ9UHP9 88 aa8.06□□□□□ -1.12
UPF3B-201ENST00000276201 SIGLEC9Q9Y336 463 aa8.06□□□□□ -1.12
UPF3B-201ENST00000276201 SPCS1Q9Y6A9 102 aa8.06□□□□□ -1.12
UPF3B-201ENST00000276201 FCN3O75636 299 aa8.06□□□□□ -1.12
UPF3B-201ENST00000276201 IGHV3-48P01763 117 aa8.06□□□□□ -1.12
UPF3B-201ENST00000276201 PLGLAQ15195 96 aa8.06□□□□□ -1.12
UPF3B-201ENST00000276201 EXOC3-AS1Q8N2X6 119 aa8.06□□□□□ -1.12
UPF3B-201ENST00000276201 OR8A1Q8NGG7 326 aa8.06□□□□□ -1.12
UPF3B-201ENST00000276201 ZNF48Q96MX3 618 aaPredicted RBP8.06□□□□□ -1.12
UPF3B-201ENST00000276201 D6R8Y8 96 aa8.05□□□□□ -1.12
UPF3B-201ENST00000276201 H0Y8G0 127 aa8.05□□□□□ -1.12
UPF3B-201ENST00000276201 LYZP61626 148 aa8.05□□□□□ -1.12
UPF3B-201ENST00000276201 CACNG7P62955 275 aa8.05□□□□□ -1.12
UPF3B-201ENST00000276201 TAL2Q16559 108 aa8.05□□□□□ -1.12
UPF3B-201ENST00000276201 MRPL51Q4U2R6 128 aaKnown RBP8.05□□□□□ -1.12
UPF3B-201ENST00000276201 HCP5Q6MZN7 132 aa8.05□□□□□ -1.12
UPF3B-201ENST00000276201 THYN1Q9P016 225 aa8.05□□□□□ -1.12
UPF3B-201ENST00000276201 ZFHX3Q15911 3703 aa8.05□□□□□ -1.12
UPF3B-201ENST00000276201 PPIAL4EA0A075B759 164 aa8.05□□□□□ -1.12
UPF3B-201ENST00000276201 WI2-2373I1.2A0A1W2PRP0 233 aa8.05□□□□□ -1.12
UPF3B-201ENST00000276201 NDUFB3O43676 98 aa8.05□□□□□ -1.12
UPF3B-201ENST00000276201 IGKV1-17P01599 117 aa8.05□□□□□ -1.12
UPF3B-201ENST00000276201 PPIAL4FP0DN26 164 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms