RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PPIAL4GP0DN37 164 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 IGLL1P15814 213 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 LOXP28300 417 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-214ENST00000637038 GPR183P32249 361 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 HES1Q14469 280 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 SEM1Q6ZVN7 128 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 ORMDL3Q8N138 153 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 Q8N976 141 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 FAM168AQ92567 244 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 ZNF747Q9BV97 191 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 ONECUT1Q9UBC0 465 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 IGKV1D-37A0A075B6S9 117 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 IGHV3-72A0A0B4J1Y9 119 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 TRAV25A0A0B4J276 109 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 IGHV1-3A0A0C4DH29 117 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 IGHV1-24A0A0C4DH33 117 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 CRXO43186 299 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-214ENST00000637038 IGLV2-23P01705 113 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 IGHV3-48P01763 117 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 PSG1P11464 419 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 SPRNQ5BIV9 151 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 EBLN2Q6P2I7 272 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 OR4X2Q8NGF9 303 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 OR9G4Q8NGQ1 327 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 RNF125Q96EQ8 232 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 PRELID3AQ96N28 172 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 PIMREGQ9BSJ6 248 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 MLST8Q9BVC4 326 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 VCX2Q9H322 139 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 UNC79Q9P2D8 2635 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 USF3Q68DE3 2245 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 ASH1LQ9NR48 2969 aaKnown RBP3.16□□□□□ -1.9
SCN1A-214ENST00000637038 TRAV26-1A0A087WT03 109 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 K7EM74 188 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 FRMD6-AS1P0C7T7 363 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 PSG3Q16557 428 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 RNF151Q2KHN1 245 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 TMEM97Q5BJF2 176 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 C4orf48Q5BLP8 95 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 MORN5Q5VZ52 161 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 UNQ5815/PRO19632Q6UWF5 114 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 BOD1L2Q8IYS8 172 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 ST6GALNAC6Q969X2 333 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 TRBV19A0A075B6N1 114 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 IGHV3-21A0A0B4J1V1 117 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 C2orf70A6NJV1 201 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 OOSP1A8MZH6 123 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 H3BRN7 92 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 BUB1B-PAK6H3BSN5 160 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 IL4P05112 153 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 IGLC1P0CG04 106 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 CFHR4Q92496 578 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 SGK494Q96LW2 274 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 FBXL15Q9H469 300 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 MAP1LC3AQ9H492 121 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 DPM3Q9P2X0 92 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 IGHV2-70DA0A0C4DH43 119 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 SH2D7A6NKC9 451 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-214ENST00000637038 NPIPB6E9PJ23 425 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 SIVA1O15304 175 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 NBR2O15453 112 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 HBDP02042 147 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 GATA3P23771 443 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 FCGR2BP31994 310 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-214ENST00000637038 SSBP2P81877 361 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-214ENST00000637038 LOXL1Q08397 574 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-214ENST00000637038 OR8A1Q8NGG7 326 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 ZNF414Q96IQ9 312 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 ZNRD1Q9P1U0 126 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 RABAC1Q9UI14 185 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 GAGE10A6NGK3 116 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 H3BTX0 84 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 J3QLI3 93 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 FSTL3O95633 263 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 COX8AP10176 69 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 CKS2P33552 79 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 HSD52Q0P140 79 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 UTF1Q5T230 341 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 LINC01545Q5VT33 79 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 SPATA12Q7Z6I5 190 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 C7orf69Q9H7B7 122 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 MGAQ8IWI9 3026 aa3.16□□□□□ -1.9
SCN1A-214ENST00000637038 PRRC2CQ9Y520 2896 aaKnown RBP3.15□□□□□ -1.9
SCN1A-214ENST00000637038 GCN1Q92616 2671 aaKnown RBP3.15□□□□□ -1.9
SCN1A-214ENST00000637038 ZNF785A8K8V0 405 aa3.15□□□□□ -1.9
SCN1A-214ENST00000637038 FCN3O75636 299 aa3.15□□□□□ -1.9
SCN1A-214ENST00000637038 LGALS9BQ3B8N2 356 aa3.15□□□□□ -1.9
SCN1A-214ENST00000637038 MPV17L2Q567V2 206 aa3.15□□□□□ -1.9
SCN1A-214ENST00000637038 GDF5OSQ5U4N7 250 aa3.15□□□□□ -1.9
SCN1A-214ENST00000637038 LGALS9CQ6DKI2 356 aa3.15□□□□□ -1.9
SCN1A-214ENST00000637038 MED13LQ71F56 2210 aa3.15□□□□□ -1.9
SCN1A-214ENST00000637038 ABCA12Q86UK0 2595 aa3.15□□□□□ -1.9
SCN1A-214ENST00000637038 A0A0G2JNJ9 132 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 TMEM89A2RUT3 159 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 INAFM1C9JVW0 142 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 F8WDY8 70 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 J3QR89 54 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 M0R1W7 72 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 APELAP0DMC3 54 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 DLX6P56179 175 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms