RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ZNF253O75346 499 aa13.02□□□□□ -0.33
CLN3-247ENST00000636351 HIST1H1AQ02539 215 aaPredicted RBP13.02□□□□□ -0.33
CLN3-247ENST00000636351 PDE6HQ13956 83 aa13.02□□□□□ -0.33
CLN3-247ENST00000636351 TMEM41BQ5BJD5 291 aa13.02□□□□□ -0.33
CLN3-247ENST00000636351 AKR1C8PQ5T2L2 129 aa13.02□□□□□ -0.33
CLN3-247ENST00000636351 RNF141Q8WVD5 230 aa13.02□□□□□ -0.33
CLN3-247ENST00000636351 SAT2Q96F10 170 aaPredicted RBP13.02□□□□□ -0.33
CLN3-247ENST00000636351 OVOL2Q9BRP0 275 aa13.02□□□□□ -0.33
CLN3-247ENST00000636351 CYTL1Q9NRR1 136 aa13.02□□□□□ -0.33
CLN3-247ENST00000636351 DUSP14O95147 198 aaKnown RBP13.01□□□□□ -0.33
CLN3-247ENST00000636351 C1QBP02746 253 aa13.01□□□□□ -0.33
CLN3-247ENST00000636351 NBEAP1P0C6P0 100 aa13.01□□□□□ -0.33
CLN3-247ENST00000636351 ZNF705DP0CH99 300 aaPredicted RBP13.01□□□□□ -0.33
CLN3-247ENST00000636351 ZNF705BP0CI00 300 aaPredicted RBP13.01□□□□□ -0.33
CLN3-247ENST00000636351 FXYD7P58549 80 aa13.01□□□□□ -0.33
CLN3-247ENST00000636351 PSG9Q00887 426 aa13.01□□□□□ -0.33
CLN3-247ENST00000636351 TMUB2Q71RG4 321 aa13.01□□□□□ -0.33
CLN3-247ENST00000636351 FXYD5Q96DB9 178 aa13.01□□□□□ -0.33
CLN3-247ENST00000636351 AAMDCQ9H7C9 122 aa13.01□□□□□ -0.33
CLN3-247ENST00000636351 CLEC5AQ9NY25 188 aa13.01□□□□□ -0.33
CLN3-247ENST00000636351 TP53TG1Q9Y2A0 90 aa13.01□□□□□ -0.33
CLN3-247ENST00000636351 ZNF705FA8MVS1 300 aaPredicted RBP13□□□□□ -0.33
CLN3-247ENST00000636351 CNN1P51911 297 aaKnown RBP13□□□□□ -0.33
CLN3-247ENST00000636351 OR8A1Q8NGG7 326 aa13□□□□□ -0.33
CLN3-247ENST00000636351 RNF183Q96D59 192 aa13□□□□□ -0.33
CLN3-247ENST00000636351 ACTR3CQ9C0K3 210 aaPredicted RBP13□□□□□ -0.33
CLN3-247ENST00000636351 PPP1R14DQ9NXH3 145 aa13□□□□□ -0.33
CLN3-247ENST00000636351 XCL2Q9UBD3 114 aa13□□□□□ -0.33
CLN3-247ENST00000636351 NDUFB4O95168 129 aa12.99□□□□□ -0.33
CLN3-247ENST00000636351 PQLC2Q6ZP29 291 aa12.99□□□□□ -0.33
CLN3-247ENST00000636351 EXOC3-AS1Q8N2X6 119 aa12.99□□□□□ -0.33
CLN3-247ENST00000636351 RPP25LQ8N5L8 163 aaKnown RBP12.99□□□□□ -0.33
CLN3-247ENST00000636351 OR10J6PQ8NGY7 276 aa12.99□□□□□ -0.33
CLN3-247ENST00000636351 LINC00476Q8WZB0 136 aa12.99□□□□□ -0.33
CLN3-247ENST00000636351 RAB24Q969Q5 203 aa12.99□□□□□ -0.33
CLN3-247ENST00000636351 ZNF503Q96F45 646 aa12.99□□□□□ -0.33
CLN3-247ENST00000636351 PHYHIPLQ96FC7 376 aa12.99□□□□□ -0.33
CLN3-247ENST00000636351 C1QTNF4Q9BXJ3 329 aa12.99□□□□□ -0.33
CLN3-247ENST00000636351 GIG44P09565 113 aaPredicted RBP12.98□□□□□ -0.33
CLN3-247ENST00000636351 ARL14EPLP0DKL9 152 aa12.98□□□□□ -0.33
CLN3-247ENST00000636351 EIF5AP63241 154 aaKnown RBP12.98□□□□□ -0.33
CLN3-247ENST00000636351 ICAM4Q14773 271 aa12.98□□□□□ -0.33
CLN3-247ENST00000636351 IQCF2Q8IXL9 164 aa12.98□□□□□ -0.33
CLN3-247ENST00000636351 MRPL53Q96EL3 112 aaKnown RBP12.98□□□□□ -0.33
CLN3-247ENST00000636351 HYLS1Q96M11 299 aa12.98□□□□□ -0.33
CLN3-247ENST00000636351 SLC35B3Q9H1N7 401 aa12.98□□□□□ -0.33
CLN3-247ENST00000636351 PRELID1Q9Y255 219 aa12.98□□□□□ -0.33
CLN3-247ENST00000636351 PRAC2D3DTV9 90 aa12.97□□□□□ -0.33
CLN3-247ENST00000636351 M0R3E3 92 aa12.97□□□□□ -0.33
CLN3-247ENST00000636351 CD300CQ08708 224 aa12.97□□□□□ -0.33
CLN3-247ENST00000636351 PMS2P11Q13670 270 aa12.97□□□□□ -0.33
CLN3-247ENST00000636351 ZFP69Q49AA0 526 aa12.97□□□□□ -0.33
CLN3-247ENST00000636351 CLUHP3Q96NS8 147 aa12.97□□□□□ -0.33
CLN3-247ENST00000636351 LY6G6CO95867 125 aa12.96□□□□□ -0.33
CLN3-247ENST00000636351 TPT1P13693 172 aaKnown RBP12.96□□□□□ -0.33
CLN3-247ENST00000636351 RANP62826 216 aaKnown RBP12.96□□□□□ -0.33
CLN3-247ENST00000636351 OR11H2Q8NH07 326 aa12.96□□□□□ -0.33
CLN3-247ENST00000636351 RARRES2Q99969 163 aa12.96□□□□□ -0.33
CLN3-247ENST00000636351 CTXND1A0A1B0GTU2 59 aa12.95□□□□□ -0.34
CLN3-247ENST00000636351 CXorf65A6NEN9 183 aa12.95□□□□□ -0.34
CLN3-247ENST00000636351 BOLA2-SMG1P6H3BVE0 249 aa12.95□□□□□ -0.34
CLN3-247ENST00000636351 STAG3L2P0CL84 134 aa12.95□□□□□ -0.34
CLN3-247ENST00000636351 STAG3L3P0CL85 134 aa12.95□□□□□ -0.34
CLN3-247ENST00000636351 SPINK13Q1W4C9 94 aa12.95□□□□□ -0.34
CLN3-247ENST00000636351 LGALSLQ3ZCW2 172 aaPredicted RBP12.95□□□□□ -0.34
CLN3-247ENST00000636351 Q9H3A6 140 aa12.95□□□□□ -0.34
CLN3-247ENST00000636351 A8MTW9 85 aa12.94□□□□□ -0.34
CLN3-247ENST00000636351 M0R2Z0 102 aa12.94□□□□□ -0.34
CLN3-247ENST00000636351 CXorf1O96002 111 aa12.94□□□□□ -0.34
CLN3-247ENST00000636351 GCHFRP30047 84 aa12.94□□□□□ -0.34
CLN3-247ENST00000636351 CSN1S1P47710 185 aa12.94□□□□□ -0.34
CLN3-247ENST00000636351 SSX7Q7RTT5 188 aa12.94□□□□□ -0.34
CLN3-247ENST00000636351 BAP18Q8IXM2 172 aa12.94□□□□□ -0.34
CLN3-247ENST00000636351 IGHV3OR16-12A0A075B7B8 117 aa12.93□□□□□ -0.34
CLN3-247ENST00000636351 A0A0J9YWU9 116 aa12.93□□□□□ -0.34
CLN3-247ENST00000636351 AMBPP02760 352 aa12.93□□□□□ -0.34
CLN3-247ENST00000636351 SEC11BP0C7V7 166 aa12.93□□□□□ -0.34
CLN3-247ENST00000636351 AMTNQ6UX39 209 aa12.93□□□□□ -0.34
CLN3-247ENST00000636351 LYPD1Q8N2G4 141 aa12.93□□□□□ -0.34
CLN3-247ENST00000636351 RPH3ALQ9UNE2 315 aa12.93□□□□□ -0.34
CLN3-247ENST00000636351 IGKV2-40A0A087WW87 121 aaPredicted RBP12.92□□□□□ -0.34
CLN3-247ENST00000636351 INSP01308 110 aa12.92□□□□□ -0.34
CLN3-247ENST00000636351 IGKV2D-40P01614 121 aaPredicted RBP12.92□□□□□ -0.34
CLN3-247ENST00000636351 ZNF726P1Q15940 193 aa12.92□□□□□ -0.34
CLN3-247ENST00000636351 FAM74A1Q5RGS3 127 aa12.92□□□□□ -0.34
CLN3-247ENST00000636351 STOML3Q8TAV4 291 aa12.92□□□□□ -0.34
CLN3-247ENST00000636351 CMTM2Q8TAZ6 248 aa12.92□□□□□ -0.34
CLN3-247ENST00000636351 TMED6Q8WW62 240 aa12.92□□□□□ -0.34
CLN3-247ENST00000636351 OTORQ9NRC9 128 aa12.92□□□□□ -0.34
CLN3-247ENST00000636351 TMEM167BQ9NRX6 74 aa12.92□□□□□ -0.34
CLN3-247ENST00000636351 GOLT1BQ9Y3E0 138 aa12.92□□□□□ -0.34
CLN3-247ENST00000636351 TRAV12-2A0A075B6T6 113 aa12.91□□□□□ -0.34
CLN3-247ENST00000636351 MAP1LC3B2A6NCE7 125 aa12.91□□□□□ -0.34
CLN3-247ENST00000636351 NUPR2A6NF83 97 aa12.91□□□□□ -0.34
CLN3-247ENST00000636351 UMAD1C9J7I0 102 aa12.91□□□□□ -0.34
CLN3-247ENST00000636351 FGF8P55075 233 aaPredicted RBP12.91□□□□□ -0.34
CLN3-247ENST00000636351 ERCC8Q13216 396 aa12.91□□□□□ -0.34
CLN3-247ENST00000636351 C9orf62Q8N4C0 152 aa12.91□□□□□ -0.34
CLN3-247ENST00000636351 CSNK1G2-AS1Q8NCQ2 148 aa12.91□□□□□ -0.34
CLN3-247ENST00000636351 FAM213BQ8TBF2 198 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms