RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 HYLS1Q96M11 299 aa13.25□□□□□ -0.29
CLN3-239ENST00000628023 ACTR3CQ9C0K3 210 aaPredicted RBP13.25□□□□□ -0.29
CLN3-239ENST00000628023 ZNF705DP0CH99 300 aaPredicted RBP13.24□□□□□ -0.29
CLN3-239ENST00000628023 ZNF705BP0CI00 300 aaPredicted RBP13.24□□□□□ -0.29
CLN3-239ENST00000628023 PRB4P10163 310 aaPredicted RBP13.24□□□□□ -0.29
CLN3-239ENST00000628023 CNN1P51911 297 aaKnown RBP13.24□□□□□ -0.29
CLN3-239ENST00000628023 OVOL2Q9BRP0 275 aa13.24□□□□□ -0.29
CLN3-239ENST00000628023 C1QTNF4Q9BXJ3 329 aa13.24□□□□□ -0.29
CLN3-239ENST00000628023 EDA2RQ9HAV5 297 aa13.24□□□□□ -0.29
CLN3-239ENST00000628023 PPP1R14DQ9NXH3 145 aa13.24□□□□□ -0.29
CLN3-239ENST00000628023 TP53TG1Q9Y2A0 90 aa13.24□□□□□ -0.29
CLN3-239ENST00000628023 HUWE1Q7Z6Z7 4374 aaKnown RBP13.23□□□□□ -0.29
CLN3-239ENST00000628023 LCE6AA0A183 80 aa13.23□□□□□ -0.29
CLN3-239ENST00000628023 ZNF705FA8MVS1 300 aaPredicted RBP13.23□□□□□ -0.29
CLN3-239ENST00000628023 NDUFB4O95168 129 aa13.23□□□□□ -0.29
CLN3-239ENST00000628023 FXYD7P58549 80 aa13.23□□□□□ -0.29
CLN3-239ENST00000628023 ZFP69Q49AA0 526 aa13.23□□□□□ -0.29
CLN3-239ENST00000628023 EXOC3-AS1Q8N2X6 119 aa13.23□□□□□ -0.29
CLN3-239ENST00000628023 RPP25LQ8N5L8 163 aaKnown RBP13.23□□□□□ -0.29
CLN3-239ENST00000628023 OR8A1Q8NGG7 326 aa13.23□□□□□ -0.29
CLN3-239ENST00000628023 RAB24Q969Q5 203 aa13.23□□□□□ -0.29
CLN3-239ENST00000628023 RNF183Q96D59 192 aa13.23□□□□□ -0.29
CLN3-239ENST00000628023 ZNF503Q96F45 646 aa13.23□□□□□ -0.29
CLN3-239ENST00000628023 PHYHIPLQ96FC7 376 aa13.23□□□□□ -0.29
CLN3-239ENST00000628023 PRELID1Q9Y255 219 aa13.23□□□□□ -0.29
CLN3-239ENST00000628023 ARL14EPLP0DKL9 152 aa13.22□□□□□ -0.29
CLN3-239ENST00000628023 TPT1P13693 172 aaKnown RBP13.22□□□□□ -0.29
CLN3-239ENST00000628023 CD300CQ08708 224 aa13.22□□□□□ -0.29
CLN3-239ENST00000628023 ICAM4Q14773 271 aa13.22□□□□□ -0.29
CLN3-239ENST00000628023 IQCF2Q8IXL9 164 aa13.22□□□□□ -0.29
CLN3-239ENST00000628023 OR10J6PQ8NGY7 276 aa13.22□□□□□ -0.29
CLN3-239ENST00000628023 MRPL53Q96EL3 112 aaKnown RBP13.22□□□□□ -0.29
CLN3-239ENST00000628023 CLUHP3Q96NS8 147 aa13.22□□□□□ -0.29
CLN3-239ENST00000628023 XCL2Q9UBD3 114 aa13.22□□□□□ -0.29
CLN3-239ENST00000628023 DNAH7Q8WXX0 4024 aa13.22□□□□□ -0.29
CLN3-239ENST00000628023 STAG3L2P0CL84 134 aa13.21□□□□□ -0.29
CLN3-239ENST00000628023 STAG3L3P0CL85 134 aa13.21□□□□□ -0.29
CLN3-239ENST00000628023 RANP62826 216 aaKnown RBP13.21□□□□□ -0.29
CLN3-239ENST00000628023 LGALSLQ3ZCW2 172 aaPredicted RBP13.21□□□□□ -0.29
CLN3-239ENST00000628023 IL17DQ8TAD2 202 aa13.21□□□□□ -0.29
CLN3-239ENST00000628023 SLC35B3Q9H1N7 401 aa13.21□□□□□ -0.29
CLN3-239ENST00000628023 CTXND1A0A1B0GTU2 59 aa13.2□□□□□ -0.3
CLN3-239ENST00000628023 M0R3E3 92 aa13.2□□□□□ -0.3
CLN3-239ENST00000628023 GIG44P09565 113 aaPredicted RBP13.2□□□□□ -0.3
CLN3-239ENST00000628023 BAP18Q8IXM2 172 aa13.2□□□□□ -0.3
CLN3-239ENST00000628023 Q9H3A6 140 aa13.2□□□□□ -0.3
CLN3-239ENST00000628023 PRAC2D3DTV9 90 aa13.19□□□□□ -0.3
CLN3-239ENST00000628023 CXorf1O96002 111 aa13.19□□□□□ -0.3
CLN3-239ENST00000628023 SEC11BP0C7V7 166 aa13.19□□□□□ -0.3
CLN3-239ENST00000628023 GCHFRP30047 84 aa13.19□□□□□ -0.3
CLN3-239ENST00000628023 CSN1S1P47710 185 aa13.19□□□□□ -0.3
CLN3-239ENST00000628023 OR11H2Q8NH07 326 aa13.19□□□□□ -0.3
CLN3-239ENST00000628023 RARRES2Q99969 163 aa13.19□□□□□ -0.3
CLN3-239ENST00000628023 BOLA2-SMG1P6H3BVE0 249 aa13.18□□□□□ -0.3
CLN3-239ENST00000628023 SPINK13Q1W4C9 94 aa13.18□□□□□ -0.3
CLN3-239ENST00000628023 FAM74A1Q5RGS3 127 aa13.18□□□□□ -0.3
CLN3-239ENST00000628023 LYPD1Q8N2G4 141 aa13.18□□□□□ -0.3
CLN3-239ENST00000628023 STOML3Q8TAV4 291 aa13.18□□□□□ -0.3
CLN3-239ENST00000628023 A8MTW9 85 aa13.17□□□□□ -0.3
CLN3-239ENST00000628023 UMAD1C9J7I0 102 aa13.17□□□□□ -0.3
CLN3-239ENST00000628023 AMBPP02760 352 aa13.17□□□□□ -0.3
CLN3-239ENST00000628023 AMTNQ6UX39 209 aa13.17□□□□□ -0.3
CLN3-239ENST00000628023 SSX7Q7RTT5 188 aa13.17□□□□□ -0.3
CLN3-239ENST00000628023 CMTM2Q8TAZ6 248 aa13.17□□□□□ -0.3
CLN3-239ENST00000628023 TMED6Q8WW62 240 aa13.17□□□□□ -0.3
CLN3-239ENST00000628023 TMEM167BQ9NRX6 74 aa13.17□□□□□ -0.3
CLN3-239ENST00000628023 M0R2Z0 102 aa13.16□□□□□ -0.3
CLN3-239ENST00000628023 ZNF726P1Q15940 193 aa13.16□□□□□ -0.3
CLN3-239ENST00000628023 EIF5AL1Q6IS14 154 aaKnown RBP13.16□□□□□ -0.3
CLN3-239ENST00000628023 C9orf62Q8N4C0 152 aa13.16□□□□□ -0.3
CLN3-239ENST00000628023 FAM213BQ8TBF2 198 aa13.16□□□□□ -0.3
CLN3-239ENST00000628023 OTORQ9NRC9 128 aa13.16□□□□□ -0.3
CLN3-239ENST00000628023 IGHV3OR16-12A0A075B7B8 117 aa13.15□□□□□ -0.3
CLN3-239ENST00000628023 IGKV2-40A0A087WW87 121 aaPredicted RBP13.15□□□□□ -0.3
CLN3-239ENST00000628023 MAP1LC3B2A6NCE7 125 aa13.15□□□□□ -0.3
CLN3-239ENST00000628023 NPIPB6E9PJ23 425 aa13.15□□□□□ -0.3
CLN3-239ENST00000628023 INSP01308 110 aa13.15□□□□□ -0.3
CLN3-239ENST00000628023 IGKV2D-40P01614 121 aaPredicted RBP13.15□□□□□ -0.3
CLN3-239ENST00000628023 SLC51BQ86UW2 128 aa13.15□□□□□ -0.3
CLN3-239ENST00000628023 CSNK1G2-AS1Q8NCQ2 148 aa13.15□□□□□ -0.3
CLN3-239ENST00000628023 MAP1LC3BQ9GZQ8 125 aa13.15□□□□□ -0.3
CLN3-239ENST00000628023 RPH3ALQ9UNE2 315 aa13.15□□□□□ -0.3
CLN3-239ENST00000628023 GOLT1BQ9Y3E0 138 aa13.15□□□□□ -0.3
CLN3-239ENST00000628023 A0A0J9YWU9 116 aa13.14□□□□□ -0.31
CLN3-239ENST00000628023 PGPA6NDG6 321 aa13.14□□□□□ -0.31
CLN3-239ENST00000628023 TSPOP30536 169 aa13.14□□□□□ -0.31
CLN3-239ENST00000628023 FHITP49789 147 aa13.14□□□□□ -0.31
CLN3-239ENST00000628023 FGF8P55075 233 aaPredicted RBP13.14□□□□□ -0.31
CLN3-239ENST00000628023 RXFP4Q8TDU9 374 aa13.14□□□□□ -0.31
CLN3-239ENST00000628023 IGF2BP2-AS1Q96M15 143 aa13.14□□□□□ -0.31
CLN3-239ENST00000628023 TMEM208Q9BTX3 173 aa13.14□□□□□ -0.31
CLN3-239ENST00000628023 TRAV12-2A0A075B6T6 113 aa13.13□□□□□ -0.31
CLN3-239ENST00000628023 CDKN1BP46527 198 aa13.13□□□□□ -0.31
CLN3-239ENST00000628023 ERCC8Q13216 396 aa13.13□□□□□ -0.31
CLN3-239ENST00000628023 TMEM78Q5T7P6 136 aa13.13□□□□□ -0.31
CLN3-239ENST00000628023 ZNF705EA8MWA4 302 aaPredicted RBP13.12□□□□□ -0.31
CLN3-239ENST00000628023 J3KRW8 73 aa13.12□□□□□ -0.31
CLN3-239ENST00000628023 SLC25A5P05141 298 aaKnown RBP13.12□□□□□ -0.31
CLN3-239ENST00000628023 MIFP14174 115 aa13.12□□□□□ -0.31
CLN3-239ENST00000628023 LEPP41159 167 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms