RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 OXA1LQ15070 435 aa10.57□□□□□ -0.72
LINC00643-206ENST00000623985 THAP6Q8TBB0 222 aa10.57□□□□□ -0.72
LINC00643-206ENST00000623985 KCNIP2Q9NS61 270 aa10.57□□□□□ -0.72
LINC00643-206ENST00000623985 TRAV5A0A0B4J249 113 aa10.56□□□□□ -0.72
LINC00643-206ENST00000623985 H0YIZ8 118 aa10.56□□□□□ -0.72
LINC00643-206ENST00000623985 H3BTX0 84 aa10.56□□□□□ -0.72
LINC00643-206ENST00000623985 TSPOP30536 169 aa10.56□□□□□ -0.72
LINC00643-206ENST00000623985 OR10J6PQ8NGY7 276 aa10.56□□□□□ -0.72
LINC00643-206ENST00000623985 PPP1R1CQ8WVI7 109 aa10.56□□□□□ -0.72
LINC00643-206ENST00000623985 NDUFAF3Q9BU61 184 aa10.56□□□□□ -0.72
LINC00643-206ENST00000623985 TMEM14CQ9P0S9 112 aa10.56□□□□□ -0.72
LINC00643-206ENST00000623985 CLINT1Q14677 625 aa10.55□□□□□ -0.72
LINC00643-206ENST00000623985 MRPL53Q96EL3 112 aaKnown RBP10.55□□□□□ -0.72
LINC00643-206ENST00000623985 FAM210BQ96KR6 192 aa10.55□□□□□ -0.72
LINC00643-206ENST00000623985 C20orf144Q9BQM9 153 aa10.55□□□□□ -0.72
LINC00643-206ENST00000623985 ZNF586Q9NXT0 402 aa10.55□□□□□ -0.72
LINC00643-206ENST00000623985 TRBV19A0A075B6N1 114 aa10.54□□□□□ -0.72
LINC00643-206ENST00000623985 LYRM9A8MSI8 78 aa10.54□□□□□ -0.72
LINC00643-206ENST00000623985 ZNF705GA8MUZ8 300 aaPredicted RBP10.54□□□□□ -0.72
LINC00643-206ENST00000623985 MPC2O95563 127 aa10.54□□□□□ -0.72
LINC00643-206ENST00000623985 PDE6HQ13956 83 aa10.54□□□□□ -0.72
LINC00643-206ENST00000623985 WDR61Q9GZS3 305 aaKnown RBP10.54□□□□□ -0.72
LINC00643-206ENST00000623985 DNAH10Q8IVF4 4471 aa10.53□□□□□ -0.72
LINC00643-206ENST00000623985 PRAC2D3DTV9 90 aa10.53□□□□□ -0.72
LINC00643-206ENST00000623985 C17orf112F2Z3M2 114 aa10.53□□□□□ -0.72
LINC00643-206ENST00000623985 PRB4P10163 310 aaPredicted RBP10.53□□□□□ -0.72
LINC00643-206ENST00000623985 TAS2R60P59551 318 aa10.53□□□□□ -0.72
LINC00643-206ENST00000623985 DAD1P61803 113 aa10.53□□□□□ -0.72
LINC00643-206ENST00000623985 C16orf74Q96GX8 76 aa10.53□□□□□ -0.72
LINC00643-206ENST00000623985 ODF3Q96PU9 254 aa10.53□□□□□ -0.72
LINC00643-206ENST00000623985 ATP5SQ99766 215 aa10.53□□□□□ -0.72
LINC00643-206ENST00000623985 MRPL32Q9BYC8 188 aaKnown RBP10.53□□□□□ -0.72
LINC00643-206ENST00000623985 HSPB11Q9Y547 144 aa10.53□□□□□ -0.72
LINC00643-206ENST00000623985 PLAC8L1A1L4L8 177 aa10.52□□□□□ -0.73
LINC00643-206ENST00000623985 NPIPB6E9PJ23 425 aa10.52□□□□□ -0.73
LINC00643-206ENST00000623985 P0DMU3 169 aa10.52□□□□□ -0.73
LINC00643-206ENST00000623985 FAM231AP0DMU4 169 aa10.52□□□□□ -0.73
LINC00643-206ENST00000623985 FAM231CP0DMU5 169 aa10.52□□□□□ -0.73
LINC00643-206ENST00000623985 PYYP10082 97 aa10.52□□□□□ -0.73
LINC00643-206ENST00000623985 HIST1H1EP10412 219 aaKnown RBP10.52□□□□□ -0.73
LINC00643-206ENST00000623985 GCSAMLQ5JQS6 135 aa10.52□□□□□ -0.73
LINC00643-206ENST00000623985 LINC01587Q99440 93 aa10.52□□□□□ -0.73
LINC00643-206ENST00000623985 SLC25A2Q9BXI2 301 aa10.52□□□□□ -0.73
LINC00643-206ENST00000623985 PRELID1Q9Y255 219 aa10.52□□□□□ -0.73
LINC00643-206ENST00000623985 H7BYZ3 331 aa10.51□□□□□ -0.73
LINC00643-206ENST00000623985 NDUFB4O95168 129 aa10.51□□□□□ -0.73
LINC00643-206ENST00000623985 PTTG1O95997 202 aa10.51□□□□□ -0.73
LINC00643-206ENST00000623985 PRM2P04554 102 aa10.51□□□□□ -0.73
LINC00643-206ENST00000623985 TMEM263Q8WUH6 116 aaKnown RBP10.51□□□□□ -0.73
LINC00643-206ENST00000623985 AAMDCQ9H7C9 122 aa10.51□□□□□ -0.73
LINC00643-206ENST00000623985 MBD2Q9UBB5 411 aa10.51□□□□□ -0.73
LINC00643-206ENST00000623985 TIMM9Q9Y5J7 89 aa10.51□□□□□ -0.73
LINC00643-206ENST00000623985 HTN3P15516 51 aa10.5□□□□□ -0.73
LINC00643-206ENST00000623985 AZU1P20160 251 aa10.5□□□□□ -0.73
LINC00643-206ENST00000623985 RPL12P30050 165 aaKnown RBP10.5□□□□□ -0.73
LINC00643-206ENST00000623985 LEPP41159 167 aa10.5□□□□□ -0.73
LINC00643-206ENST00000623985 GFI1BQ5VTD9 330 aa10.5□□□□□ -0.73
LINC00643-206ENST00000623985 ZNF493Q6ZR52 646 aa10.5□□□□□ -0.73
LINC00643-206ENST00000623985 MIR17HGQ75NE6 70 aa10.5□□□□□ -0.73
LINC00643-206ENST00000623985 RNASE8Q8TDE3 154 aaKnown RBP10.5□□□□□ -0.73
LINC00643-206ENST00000623985 BLNKQ8WV28 456 aa10.5□□□□□ -0.73
LINC00643-206ENST00000623985 FAM167A-AS1Q96KT0 104 aa10.5□□□□□ -0.73
LINC00643-206ENST00000623985 PARD6GQ9BYG4 376 aaPredicted RBP10.5□□□□□ -0.73
LINC00643-206ENST00000623985 PLA2G2EQ9NZK7 142 aa10.5□□□□□ -0.73
LINC00643-206ENST00000623985 M0R3E3 92 aa10.49□□□□□ -0.73
LINC00643-206ENST00000623985 CT45A10P0DMU9 189 aa10.49□□□□□ -0.73
LINC00643-206ENST00000623985 KIR3DS1Q14943 382 aa10.49□□□□□ -0.73
LINC00643-206ENST00000623985 FUT9Q9Y231 359 aa10.49□□□□□ -0.73
LINC00643-206ENST00000623985 ALG5Q9Y673 324 aa10.49□□□□□ -0.73
LINC00643-206ENST00000623985 HECTD4Q9Y4D8 3996 aa10.49□□□□□ -0.73
LINC00643-206ENST00000623985 IFNA5P01569 189 aa10.48□□□□□ -0.73
LINC00643-206ENST00000623985 HTN1P15515 57 aa10.48□□□□□ -0.73
LINC00643-206ENST00000623985 EXOC3-AS1Q8N2X6 119 aa10.48□□□□□ -0.73
LINC00643-206ENST00000623985 POM121L12Q8N7R1 296 aa10.48□□□□□ -0.73
LINC00643-206ENST00000623985 PAXXQ9BUH6 204 aa10.48□□□□□ -0.73
LINC00643-206ENST00000623985 OR51M1Q9H341 326 aa10.48□□□□□ -0.73
LINC00643-206ENST00000623985 TIMM8BQ9Y5J9 83 aaPredicted RBP10.48□□□□□ -0.73
LINC00643-206ENST00000623985 NBEAP1P0C6P0 100 aa10.47□□□□□ -0.73
LINC00643-206ENST00000623985 DEFB130BP0DP73 79 aa10.47□□□□□ -0.73
LINC00643-206ENST00000623985 DEFB130AP0DP74 79 aa10.47□□□□□ -0.73
LINC00643-206ENST00000623985 FFAR4Q5NUL3 377 aa10.47□□□□□ -0.73
LINC00643-206ENST00000623985 TMEM88Q6PEY1 159 aa10.47□□□□□ -0.73
LINC00643-206ENST00000623985 C15orf53Q8NAA6 179 aa10.47□□□□□ -0.73
LINC00643-206ENST00000623985 SCGB1C1Q8TD33 95 aa10.47□□□□□ -0.73
LINC00643-206ENST00000623985 FXYD5Q96DB9 178 aa10.47□□□□□ -0.73
LINC00643-206ENST00000623985 SMIM3Q9BZL3 60 aa10.47□□□□□ -0.73
LINC00643-206ENST00000623985 J3KRW8 73 aa10.46□□□□□ -0.73
LINC00643-206ENST00000623985 OR7C2O60412 319 aa10.46□□□□□ -0.73
LINC00643-206ENST00000623985 SLC25A5P05141 298 aaKnown RBP10.46□□□□□ -0.73
LINC00643-206ENST00000623985 OR10J4P0C629 311 aa10.46□□□□□ -0.73
LINC00643-206ENST00000623985 ICAM4Q14773 271 aa10.46□□□□□ -0.73
LINC00643-206ENST00000623985 KHDC3LQ587J8 217 aa10.46□□□□□ -0.73
LINC00643-206ENST00000623985 C9orf47Q6ZRZ4 202 aa10.46□□□□□ -0.73
LINC00643-206ENST00000623985 CCDC28AQ8IWP9 274 aa10.46□□□□□ -0.73
LINC00643-206ENST00000623985 LINC00477Q96M19 166 aa10.46□□□□□ -0.73
LINC00643-206ENST00000623985 PYGO2Q9BRQ0 406 aa10.46□□□□□ -0.73
LINC00643-206ENST00000623985 TRAV12-3A0A0B4J271 114 aa10.45□□□□□ -0.74
LINC00643-206ENST00000623985 C7orf71A4D174 169 aa10.45□□□□□ -0.74
LINC00643-206ENST00000623985 KLLNB2CW77 178 aa10.45□□□□□ -0.74
LINC00643-206ENST00000623985 ATP5G1P05496 136 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms