RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 KCNIP2Q9NS61 270 aa10.57□□□□□ -0.72
LINC00643-205ENST00000623219 TRAV5A0A0B4J249 113 aa10.56□□□□□ -0.72
LINC00643-205ENST00000623219 H0YIZ8 118 aa10.56□□□□□ -0.72
LINC00643-205ENST00000623219 H3BTX0 84 aa10.56□□□□□ -0.72
LINC00643-205ENST00000623219 TSPOP30536 169 aa10.56□□□□□ -0.72
LINC00643-205ENST00000623219 OR10J6PQ8NGY7 276 aa10.56□□□□□ -0.72
LINC00643-205ENST00000623219 PPP1R1CQ8WVI7 109 aa10.56□□□□□ -0.72
LINC00643-205ENST00000623219 NDUFAF3Q9BU61 184 aa10.56□□□□□ -0.72
LINC00643-205ENST00000623219 TMEM14CQ9P0S9 112 aa10.56□□□□□ -0.72
LINC00643-205ENST00000623219 CLINT1Q14677 625 aa10.55□□□□□ -0.72
LINC00643-205ENST00000623219 MRPL53Q96EL3 112 aaKnown RBP10.55□□□□□ -0.72
LINC00643-205ENST00000623219 FAM210BQ96KR6 192 aa10.55□□□□□ -0.72
LINC00643-205ENST00000623219 C20orf144Q9BQM9 153 aa10.55□□□□□ -0.72
LINC00643-205ENST00000623219 ZNF586Q9NXT0 402 aa10.55□□□□□ -0.72
LINC00643-205ENST00000623219 TRBV19A0A075B6N1 114 aa10.54□□□□□ -0.72
LINC00643-205ENST00000623219 LYRM9A8MSI8 78 aa10.54□□□□□ -0.72
LINC00643-205ENST00000623219 ZNF705GA8MUZ8 300 aaPredicted RBP10.54□□□□□ -0.72
LINC00643-205ENST00000623219 MPC2O95563 127 aa10.54□□□□□ -0.72
LINC00643-205ENST00000623219 PDE6HQ13956 83 aa10.54□□□□□ -0.72
LINC00643-205ENST00000623219 WDR61Q9GZS3 305 aaKnown RBP10.54□□□□□ -0.72
LINC00643-205ENST00000623219 DNAH10Q8IVF4 4471 aa10.53□□□□□ -0.72
LINC00643-205ENST00000623219 PRAC2D3DTV9 90 aa10.53□□□□□ -0.72
LINC00643-205ENST00000623219 C17orf112F2Z3M2 114 aa10.53□□□□□ -0.72
LINC00643-205ENST00000623219 PRB4P10163 310 aaPredicted RBP10.53□□□□□ -0.72
LINC00643-205ENST00000623219 TAS2R60P59551 318 aa10.53□□□□□ -0.72
LINC00643-205ENST00000623219 DAD1P61803 113 aa10.53□□□□□ -0.72
LINC00643-205ENST00000623219 LCE2DQ5TA82 110 aaPredicted RBP10.53□□□□□ -0.72
LINC00643-205ENST00000623219 C16orf74Q96GX8 76 aa10.53□□□□□ -0.72
LINC00643-205ENST00000623219 ODF3Q96PU9 254 aa10.53□□□□□ -0.72
LINC00643-205ENST00000623219 ATP5SQ99766 215 aa10.53□□□□□ -0.72
LINC00643-205ENST00000623219 MRPL32Q9BYC8 188 aaKnown RBP10.53□□□□□ -0.72
LINC00643-205ENST00000623219 HSPB11Q9Y547 144 aa10.53□□□□□ -0.72
LINC00643-205ENST00000623219 PLAC8L1A1L4L8 177 aa10.52□□□□□ -0.73
LINC00643-205ENST00000623219 NPIPB6E9PJ23 425 aa10.52□□□□□ -0.73
LINC00643-205ENST00000623219 P0DMU3 169 aa10.52□□□□□ -0.73
LINC00643-205ENST00000623219 FAM231AP0DMU4 169 aa10.52□□□□□ -0.73
LINC00643-205ENST00000623219 FAM231CP0DMU5 169 aa10.52□□□□□ -0.73
LINC00643-205ENST00000623219 PYYP10082 97 aa10.52□□□□□ -0.73
LINC00643-205ENST00000623219 HIST1H1EP10412 219 aaKnown RBP10.52□□□□□ -0.73
LINC00643-205ENST00000623219 GCSAMLQ5JQS6 135 aa10.52□□□□□ -0.73
LINC00643-205ENST00000623219 LINC01587Q99440 93 aa10.52□□□□□ -0.73
LINC00643-205ENST00000623219 SLC25A2Q9BXI2 301 aa10.52□□□□□ -0.73
LINC00643-205ENST00000623219 PRELID1Q9Y255 219 aa10.52□□□□□ -0.73
LINC00643-205ENST00000623219 H7BYZ3 331 aa10.51□□□□□ -0.73
LINC00643-205ENST00000623219 NDUFB4O95168 129 aa10.51□□□□□ -0.73
LINC00643-205ENST00000623219 PTTG1O95997 202 aa10.51□□□□□ -0.73
LINC00643-205ENST00000623219 PRM2P04554 102 aa10.51□□□□□ -0.73
LINC00643-205ENST00000623219 TMEM263Q8WUH6 116 aaKnown RBP10.51□□□□□ -0.73
LINC00643-205ENST00000623219 AAMDCQ9H7C9 122 aa10.51□□□□□ -0.73
LINC00643-205ENST00000623219 MBD2Q9UBB5 411 aa10.51□□□□□ -0.73
LINC00643-205ENST00000623219 TIMM9Q9Y5J7 89 aa10.51□□□□□ -0.73
LINC00643-205ENST00000623219 HTN3P15516 51 aa10.5□□□□□ -0.73
LINC00643-205ENST00000623219 AZU1P20160 251 aa10.5□□□□□ -0.73
LINC00643-205ENST00000623219 RPL12P30050 165 aaKnown RBP10.5□□□□□ -0.73
LINC00643-205ENST00000623219 LEPP41159 167 aa10.5□□□□□ -0.73
LINC00643-205ENST00000623219 GFI1BQ5VTD9 330 aa10.5□□□□□ -0.73
LINC00643-205ENST00000623219 ZNF493Q6ZR52 646 aa10.5□□□□□ -0.73
LINC00643-205ENST00000623219 MIR17HGQ75NE6 70 aa10.5□□□□□ -0.73
LINC00643-205ENST00000623219 RNASE8Q8TDE3 154 aaKnown RBP10.5□□□□□ -0.73
LINC00643-205ENST00000623219 BLNKQ8WV28 456 aa10.5□□□□□ -0.73
LINC00643-205ENST00000623219 FAM167A-AS1Q96KT0 104 aa10.5□□□□□ -0.73
LINC00643-205ENST00000623219 PARD6GQ9BYG4 376 aaPredicted RBP10.5□□□□□ -0.73
LINC00643-205ENST00000623219 PLA2G2EQ9NZK7 142 aa10.5□□□□□ -0.73
LINC00643-205ENST00000623219 M0R3E3 92 aa10.49□□□□□ -0.73
LINC00643-205ENST00000623219 CT45A10P0DMU9 189 aa10.49□□□□□ -0.73
LINC00643-205ENST00000623219 KIR3DS1Q14943 382 aa10.49□□□□□ -0.73
LINC00643-205ENST00000623219 FUT9Q9Y231 359 aa10.49□□□□□ -0.73
LINC00643-205ENST00000623219 ALG5Q9Y673 324 aa10.49□□□□□ -0.73
LINC00643-205ENST00000623219 HECTD4Q9Y4D8 3996 aa10.49□□□□□ -0.73
LINC00643-205ENST00000623219 IFNA5P01569 189 aa10.48□□□□□ -0.73
LINC00643-205ENST00000623219 HTN1P15515 57 aa10.48□□□□□ -0.73
LINC00643-205ENST00000623219 EXOC3-AS1Q8N2X6 119 aa10.48□□□□□ -0.73
LINC00643-205ENST00000623219 POM121L12Q8N7R1 296 aa10.48□□□□□ -0.73
LINC00643-205ENST00000623219 PAXXQ9BUH6 204 aa10.48□□□□□ -0.73
LINC00643-205ENST00000623219 OR51M1Q9H341 326 aa10.48□□□□□ -0.73
LINC00643-205ENST00000623219 TIMM8BQ9Y5J9 83 aaPredicted RBP10.48□□□□□ -0.73
LINC00643-205ENST00000623219 NBEAP1P0C6P0 100 aa10.47□□□□□ -0.73
LINC00643-205ENST00000623219 DEFB130BP0DP73 79 aa10.47□□□□□ -0.73
LINC00643-205ENST00000623219 DEFB130AP0DP74 79 aa10.47□□□□□ -0.73
LINC00643-205ENST00000623219 FFAR4Q5NUL3 377 aa10.47□□□□□ -0.73
LINC00643-205ENST00000623219 TMEM88Q6PEY1 159 aa10.47□□□□□ -0.73
LINC00643-205ENST00000623219 C15orf53Q8NAA6 179 aa10.47□□□□□ -0.73
LINC00643-205ENST00000623219 SCGB1C1Q8TD33 95 aa10.47□□□□□ -0.73
LINC00643-205ENST00000623219 FXYD5Q96DB9 178 aa10.47□□□□□ -0.73
LINC00643-205ENST00000623219 SMIM3Q9BZL3 60 aa10.47□□□□□ -0.73
LINC00643-205ENST00000623219 J3KRW8 73 aa10.46□□□□□ -0.73
LINC00643-205ENST00000623219 OR7C2O60412 319 aa10.46□□□□□ -0.73
LINC00643-205ENST00000623219 SLC25A5P05141 298 aaKnown RBP10.46□□□□□ -0.73
LINC00643-205ENST00000623219 OR10J4P0C629 311 aa10.46□□□□□ -0.73
LINC00643-205ENST00000623219 ICAM4Q14773 271 aa10.46□□□□□ -0.73
LINC00643-205ENST00000623219 KHDC3LQ587J8 217 aa10.46□□□□□ -0.73
LINC00643-205ENST00000623219 C9orf47Q6ZRZ4 202 aa10.46□□□□□ -0.73
LINC00643-205ENST00000623219 CCDC28AQ8IWP9 274 aa10.46□□□□□ -0.73
LINC00643-205ENST00000623219 LINC00477Q96M19 166 aa10.46□□□□□ -0.73
LINC00643-205ENST00000623219 PYGO2Q9BRQ0 406 aa10.46□□□□□ -0.73
LINC00643-205ENST00000623219 TRAV12-3A0A0B4J271 114 aa10.45□□□□□ -0.74
LINC00643-205ENST00000623219 C7orf71A4D174 169 aa10.45□□□□□ -0.74
LINC00643-205ENST00000623219 KLLNB2CW77 178 aa10.45□□□□□ -0.74
LINC00643-205ENST00000623219 ATP5G1P05496 136 aa10.45□□□□□ -0.74
LINC00643-205ENST00000623219 ATP5G3P48201 142 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms