RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 CHEK1O14757 476 aa11.48□□□□□ -0.57
SHROOM1-208ENST00000617339 USP24Q9UPU5 2620 aa11.48□□□□□ -0.57
SHROOM1-208ENST00000617339 IGHV3-66A0A0C4DH42 116 aa11.48□□□□□ -0.57
SHROOM1-208ENST00000617339 TGFAP01135 160 aa11.48□□□□□ -0.57
SHROOM1-208ENST00000617339 IGLC1P0CG04 106 aa11.48□□□□□ -0.57
SHROOM1-208ENST00000617339 IGFL4Q6B9Z1 124 aa11.48□□□□□ -0.57
SHROOM1-208ENST00000617339 FAM71F2Q6NXP2 309 aa11.48□□□□□ -0.57
SHROOM1-208ENST00000617339 FXYD7P58549 80 aa11.47□□□□□ -0.57
SHROOM1-208ENST00000617339 DYNAPQ8N1N2 210 aa11.47□□□□□ -0.57
SHROOM1-208ENST00000617339 SCRT2Q9NQ03 307 aa11.47□□□□□ -0.57
SHROOM1-208ENST00000617339 PEX7O00628 323 aa11.47□□□□□ -0.57
SHROOM1-208ENST00000617339 ZNF207O43670 478 aaKnown RBP11.47□□□□□ -0.57
SHROOM1-208ENST00000617339 VMO1Q7Z5L0 202 aa11.47□□□□□ -0.57
SHROOM1-208ENST00000617339 BCL6BQ8N143 479 aaPredicted RBP11.47□□□□□ -0.57
SHROOM1-208ENST00000617339 OR2J3O76001 311 aa11.47□□□□□ -0.57
SHROOM1-208ENST00000617339 HIST1H1AQ02539 215 aaPredicted RBP11.47□□□□□ -0.57
SHROOM1-208ENST00000617339 OR8A1Q8NGG7 326 aa11.47□□□□□ -0.57
SHROOM1-208ENST00000617339 ITLN2Q8WWU7 325 aaPredicted RBP11.47□□□□□ -0.57
SHROOM1-208ENST00000617339 MBD6Q96DN6 1003 aa11.47□□□□□ -0.57
SHROOM1-208ENST00000617339 HIST1H1EP10412 219 aaKnown RBP11.46□□□□□ -0.57
SHROOM1-208ENST00000617339 HBBP68871 147 aa11.46□□□□□ -0.57
SHROOM1-208ENST00000617339 KLF5Q13887 457 aaPredicted RBP11.46□□□□□ -0.57
SHROOM1-208ENST00000617339 EXOC3-AS1Q8N2X6 119 aa11.46□□□□□ -0.57
SHROOM1-208ENST00000617339 JMJD8Q96S16 334 aa11.46□□□□□ -0.57
SHROOM1-208ENST00000617339 TNFRSF13BO14836 293 aaPredicted RBP11.46□□□□□ -0.58
SHROOM1-208ENST00000617339 IGLV1-47P01700 117 aa11.46□□□□□ -0.58
SHROOM1-208ENST00000617339 LGALS7P47929 136 aa11.46□□□□□ -0.58
SHROOM1-208ENST00000617339 POU2AF1Q16633 256 aa11.46□□□□□ -0.58
SHROOM1-208ENST00000617339 PIMREGQ9BSJ6 248 aa11.46□□□□□ -0.58
SHROOM1-208ENST00000617339 EFNA4P52798 201 aa11.46□□□□□ -0.58
SHROOM1-208ENST00000617339 TMEM97Q5BJF2 176 aa11.46□□□□□ -0.58
SHROOM1-208ENST00000617339 HLA-DRB1P01911 266 aa11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 PLP1P60201 277 aa11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 PAX2Q02962 417 aa11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 Q71RC1 249 aaPredicted RBP11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 C5orf17Q8NAS9 161 aa11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 C17orf77Q96MU5 243 aa11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 GTSF1LQ9H1H1 148 aa11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 KAAG1Q9UBP8 84 aa11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 F11RQ9Y624 299 aaKnown RBP11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 J3KRW8 73 aa11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 LINC00322Q6ZN03 302 aaPredicted RBP11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 SLC25A2Q9BXI2 301 aa11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 LINC00574Q9H8X3 128 aa11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 SOX21Q9Y651 276 aaPredicted RBP11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 NCR2O95944 276 aa11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 FCGR2BP31994 310 aaPredicted RBP11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 PRSS57Q6UWY2 283 aa11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 NCOR1P1Q9H4R4 102 aa11.45□□□□□ -0.58
SHROOM1-208ENST00000617339 HIST2H2BCQ6DN03 193 aa11.44□□□□□ -0.58
SHROOM1-208ENST00000617339 DAZAP1Q96EP5 407 aaKnown RBP11.44□□□□□ -0.58
SHROOM1-208ENST00000617339 LOC389332A0A1B0GUA5 103 aa11.44□□□□□ -0.58
SHROOM1-208ENST00000617339 TCRBV4S1A1TA0A5B7 111 aa11.44□□□□□ -0.58
SHROOM1-208ENST00000617339 SAMD13Q5VXD3 122 aa11.44□□□□□ -0.58
SHROOM1-208ENST00000617339 ZNF329Q86UD4 541 aa11.43□□□□□ -0.58
SHROOM1-208ENST00000617339 WIPF2Q8TF74 440 aaPredicted RBP11.43□□□□□ -0.58
SHROOM1-208ENST00000617339 IGKV1D-37A0A075B6S9 117 aa11.43□□□□□ -0.58
SHROOM1-208ENST00000617339 TMSB15BA0A087X1C1 80 aa11.43□□□□□ -0.58
SHROOM1-208ENST00000617339 P01737 135 aa11.43□□□□□ -0.58
SHROOM1-208ENST00000617339 IL4P05112 153 aa11.43□□□□□ -0.58
SHROOM1-208ENST00000617339 OR5AL1P0C617 328 aa11.43□□□□□ -0.58
SHROOM1-208ENST00000617339 NBEAP1P0C6P0 100 aa11.43□□□□□ -0.58
SHROOM1-208ENST00000617339 CCDC144NLQ6NUI1 221 aa11.43□□□□□ -0.58
SHROOM1-208ENST00000617339 OR4A5Q8NH83 315 aa11.42□□□□□ -0.58
SHROOM1-208ENST00000617339 THYN1Q9P016 225 aa11.42□□□□□ -0.58
SHROOM1-208ENST00000617339 IGHV3-11P01762 117 aa11.42□□□□□ -0.58
SHROOM1-208ENST00000617339 FAM106CPP0CH98 169 aa11.42□□□□□ -0.58
SHROOM1-208ENST00000617339 C2orf91Q6ZV80 131 aa11.42□□□□□ -0.58
SHROOM1-208ENST00000617339 WFDC3Q8IUB2 231 aa11.42□□□□□ -0.58
SHROOM1-208ENST00000617339 OR10AG1Q8NH19 301 aa11.42□□□□□ -0.58
SHROOM1-208ENST00000617339 GTSF1Q8WW33 167 aa11.42□□□□□ -0.58
SHROOM1-208ENST00000617339 FAM167A-AS1Q96KT0 104 aa11.42□□□□□ -0.58
SHROOM1-208ENST00000617339 HELZ2Q9BYK8 2649 aaKnown RBP11.42□□□□□ -0.58
SHROOM1-208ENST00000617339 APOHP02749 345 aaPredicted RBP11.42□□□□□ -0.58
SHROOM1-208ENST00000617339 PF4V1P10720 104 aa11.42□□□□□ -0.58
SHROOM1-208ENST00000617339 RPS20P60866 119 aaKnown RBP11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 KIR3DS1Q14943 382 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 PRNTQ86SH4 94 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 OR2K2Q8NGT1 345 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 WFDC12Q8WWY7 111 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 CACNG8Q8WXS5 425 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 PRORYQ9H606 182 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 RABAC1Q9UI14 185 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 A0A0G2JLM5 398 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 M0R3E3 92 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 MRGPRG-AS1Q2M3A8 158 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 CLUHP3Q96NS8 147 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 RPP21Q9H633 154 aaKnown RBP11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 C1RLQ9NZP8 487 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 G3V4G9 280 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 NBR2O15453 112 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 RASL11AQ6T310 242 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 CHD6Q8TD26 2715 aa11.41□□□□□ -0.58
SHROOM1-208ENST00000617339 NMUP48645 174 aa11.4□□□□□ -0.58
SHROOM1-208ENST00000617339 GOLT1AQ6ZVE7 132 aa11.4□□□□□ -0.58
SHROOM1-208ENST00000617339 OR1L4Q8NGR5 311 aa11.4□□□□□ -0.58
SHROOM1-208ENST00000617339 PRSS3P2Q8NHM4 247 aa11.4□□□□□ -0.58
SHROOM1-208ENST00000617339 SPCS1Q9Y6A9 102 aa11.4□□□□□ -0.58
SHROOM1-208ENST00000617339 LINC01548A6NM66 108 aa11.4□□□□□ -0.58
SHROOM1-208ENST00000617339 ZNF785A8K8V0 405 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms