RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 IGHV3OR16-12A0A075B7B8 117 aa9.77□□□□□ -0.85
LINC00540-202ENST00000616974 LGALSLQ3ZCW2 172 aaPredicted RBP9.77□□□□□ -0.85
LINC00540-202ENST00000616974 Q6ZQT7 251 aa9.77□□□□□ -0.85
LINC00540-202ENST00000616974 OR2G3Q8NGZ4 309 aa9.77□□□□□ -0.85
LINC00540-202ENST00000616974 TIMM9Q9Y5J7 89 aa9.77□□□□□ -0.85
LINC00540-202ENST00000616974 RYR2Q92736 4967 aa9.77□□□□□ -0.85
LINC00540-202ENST00000616974 J3KRW8 73 aa9.76□□□□□ -0.85
LINC00540-202ENST00000616974 ARL14EPLP0DKL9 152 aa9.76□□□□□ -0.85
LINC00540-202ENST00000616974 RANP62826 216 aaKnown RBP9.76□□□□□ -0.85
LINC00540-202ENST00000616974 UBE2L3P68036 154 aaKnown RBP9.76□□□□□ -0.85
LINC00540-202ENST00000616974 ICAM4Q14773 271 aa9.76□□□□□ -0.85
LINC00540-202ENST00000616974 EBLN2Q6P2I7 272 aa9.76□□□□□ -0.85
LINC00540-202ENST00000616974 RAB24Q969Q5 203 aa9.76□□□□□ -0.85
LINC00540-202ENST00000616974 MRPL32Q9BYC8 188 aaKnown RBP9.76□□□□□ -0.85
LINC00540-202ENST00000616974 TMPRSS5Q9H3S3 457 aa9.76□□□□□ -0.85
LINC00540-202ENST00000616974 IGKV2-40A0A087WW87 121 aaPredicted RBP9.76□□□□□ -0.85
LINC00540-202ENST00000616974 HMSDA8MTL9 139 aa9.76□□□□□ -0.85
LINC00540-202ENST00000616974 A8MTW9 85 aa9.76□□□□□ -0.85
LINC00540-202ENST00000616974 UBE2CO00762 179 aa9.76□□□□□ -0.85
LINC00540-202ENST00000616974 IGKV2D-40P01614 121 aaPredicted RBP9.76□□□□□ -0.85
LINC00540-202ENST00000616974 SPP1P10451 314 aa9.76□□□□□ -0.85
LINC00540-202ENST00000616974 RHOBP62745 196 aa9.76□□□□□ -0.85
LINC00540-202ENST00000616974 PSG9Q00887 426 aa9.76□□□□□ -0.85
LINC00540-202ENST00000616974 C1orf158Q8N1D5 194 aa9.76□□□□□ -0.85
LINC00540-202ENST00000616974 PSMG3Q9BT73 122 aaPredicted RBP9.76□□□□□ -0.85
LINC00540-202ENST00000616974 KCNIP2Q9NS61 270 aa9.76□□□□□ -0.85
LINC00540-202ENST00000616974 S100A7P31151 101 aa9.75□□□□□ -0.85
LINC00540-202ENST00000616974 NKX2-5P52952 324 aaPredicted RBP9.75□□□□□ -0.85
LINC00540-202ENST00000616974 FGF8P55075 233 aaPredicted RBP9.75□□□□□ -0.85
LINC00540-202ENST00000616974 ZNF345Q14585 488 aa9.75□□□□□ -0.85
LINC00540-202ENST00000616974 ACOT6Q3I5F7 207 aaPredicted RBP9.75□□□□□ -0.85
LINC00540-202ENST00000616974 TCTE3Q8IZS6 198 aa9.75□□□□□ -0.85
LINC00540-202ENST00000616974 Q8NAQ8 132 aa9.75□□□□□ -0.85
LINC00540-202ENST00000616974 SLC50A1Q9BRV3 221 aa9.75□□□□□ -0.85
LINC00540-202ENST00000616974 IGHV4-28A0A0C4DH34 117 aa9.74□□□□□ -0.85
LINC00540-202ENST00000616974 CDC34P49427 236 aaPredicted RBP9.74□□□□□ -0.85
LINC00540-202ENST00000616974 TMUB2Q71RG4 321 aa9.74□□□□□ -0.85
LINC00540-202ENST00000616974 S100A7AQ86SG5 101 aa9.74□□□□□ -0.85
LINC00540-202ENST00000616974 VGLL1Q99990 258 aa9.74□□□□□ -0.85
LINC00540-202ENST00000616974 TP53TG1Q9Y2A0 90 aa9.74□□□□□ -0.85
LINC00540-202ENST00000616974 CT45A10P0DMU9 189 aa9.74□□□□□ -0.85
LINC00540-202ENST00000616974 HYLS1Q96M11 299 aa9.74□□□□□ -0.85
LINC00540-202ENST00000616974 ARPC5LQ9BPX5 153 aa9.74□□□□□ -0.85
LINC00540-202ENST00000616974 ZNF471Q9BX82 626 aaPredicted RBP9.74□□□□□ -0.85
LINC00540-202ENST00000616974 A0A1W2PPV4 95 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 ZNF705EA8MWA4 302 aaPredicted RBP9.73□□□□□ -0.85
LINC00540-202ENST00000616974 STAG3L2P0CL84 134 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 STAG3L3P0CL85 134 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 MORN3Q6PF18 240 aaPredicted RBP9.73□□□□□ -0.85
LINC00540-202ENST00000616974 AKAP14Q86UN6 197 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 Q8TAT8 98 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 Q9H3A6 140 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 CELA1Q9UNI1 258 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 DNAH1Q9P2D7 4330 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 BORCS7-ASMTA0A0B4J1R7 106 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 BCL2L11O43521 198 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 GNG5P63218 68 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 KHDC3LQ587J8 217 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 TMEM41BQ5BJD5 291 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 PRR9Q5T870 116 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 ZNF705AQ6ZN79 300 aaPredicted RBP9.73□□□□□ -0.85
LINC00540-202ENST00000616974 ZNF767PQ75MW2 155 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 MUC7Q8TAX7 377 aa9.73□□□□□ -0.85
LINC00540-202ENST00000616974 JTBO76095 146 aa9.72□□□□□ -0.85
LINC00540-202ENST00000616974 SERF2P84101 59 aa9.72□□□□□ -0.85
LINC00540-202ENST00000616974 PMS2P11Q13670 270 aa9.72□□□□□ -0.85
LINC00540-202ENST00000616974 GUK1Q16774 197 aa9.72□□□□□ -0.85
LINC00540-202ENST00000616974 SGK494Q96LW2 274 aa9.72□□□□□ -0.85
LINC00540-202ENST00000616974 AGPAT4-IT1Q9H0P7 198 aa9.72□□□□□ -0.85
LINC00540-202ENST00000616974 A0A1B0GV50 99 aa9.71□□□□□ -0.85
LINC00540-202ENST00000616974 ZNF253O75346 499 aa9.71□□□□□ -0.85
LINC00540-202ENST00000616974 C1QBP02746 253 aa9.71□□□□□ -0.85
LINC00540-202ENST00000616974 PDE6HQ13956 83 aa9.71□□□□□ -0.85
LINC00540-202ENST00000616974 SAMD13Q5VXD3 122 aa9.71□□□□□ -0.85
LINC00540-202ENST00000616974 TMED6Q8WW62 240 aa9.71□□□□□ -0.85
LINC00540-202ENST00000616974 RPH3ALQ9UNE2 315 aa9.71□□□□□ -0.85
LINC00540-202ENST00000616974 NACAE9PAV3 2078 aa9.71□□□□□ -0.85
LINC00540-202ENST00000616974 TRAV8-1A0A0A6YYK1 113 aa9.71□□□□□ -0.86
LINC00540-202ENST00000616974 TAAR5O14804 337 aa9.71□□□□□ -0.86
LINC00540-202ENST00000616974 AZU1P20160 251 aa9.71□□□□□ -0.86
LINC00540-202ENST00000616974 NANOS2P60321 138 aaKnown RBP9.71□□□□□ -0.86
LINC00540-202ENST00000616974 CASC10Q5T4H9 136 aa9.71□□□□□ -0.86
LINC00540-202ENST00000616974 GNPNAT1Q96EK6 184 aaPredicted RBP9.71□□□□□ -0.86
LINC00540-202ENST00000616974 BOLA1Q9Y3E2 137 aa9.71□□□□□ -0.86
LINC00540-202ENST00000616974 NPIPB6E9PJ23 425 aa9.7□□□□□ -0.86
LINC00540-202ENST00000616974 BOLA2-SMG1P6H3BVE0 249 aa9.7□□□□□ -0.86
LINC00540-202ENST00000616974 GCHFRP30047 84 aa9.7□□□□□ -0.86
LINC00540-202ENST00000616974 EMP1P54849 157 aa9.7□□□□□ -0.86
LINC00540-202ENST00000616974 NUTF2P61970 127 aaKnown RBP9.7□□□□□ -0.86
LINC00540-202ENST00000616974 GFI1BQ5VTD9 330 aa9.7□□□□□ -0.86
LINC00540-202ENST00000616974 C9orf62Q8N4C0 152 aa9.7□□□□□ -0.86
LINC00540-202ENST00000616974 IL17DQ8TAD2 202 aa9.7□□□□□ -0.86
LINC00540-202ENST00000616974 CLUHP3Q96NS8 147 aa9.7□□□□□ -0.86
LINC00540-202ENST00000616974 RNF24Q9Y225 148 aa9.7□□□□□ -0.86
LINC00540-202ENST00000616974 A0A0D9SG52 128 aa9.7□□□□□ -0.86
LINC00540-202ENST00000616974 KANTRA0A1W2PQU2 76 aa9.7□□□□□ -0.86
LINC00540-202ENST00000616974 ZNF705GA8MUZ8 300 aaPredicted RBP9.7□□□□□ -0.86
LINC00540-202ENST00000616974 GGTLC3B5MD39 225 aa9.7□□□□□ -0.86
LINC00540-202ENST00000616974 TAS2R45P59539 299 aa9.7□□□□□ -0.86
LINC00540-202ENST00000616974 IQCF2Q8IXL9 164 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms