RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, human

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE3-208	ENST00000614678	FFAR4	Q5NUL3	377 aa		4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	RPL7L1	Q6DKI1	246 aa	Known RBP	4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	OR8A1	Q8NGG7	326 aa		4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	LRRC20	Q8TCA0	184 aa		4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	HYLS1	Q96M11	299 aa		4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	LY6G6C	O95867	125 aa		4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	RPL7	P18124	248 aa	Known RBP	4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	NKX2-5	P52952	324 aa	Predicted RBP	4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	SELENOT	P62341	195 aa		4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	RGS21	Q2M5E4	152 aa		4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678		Q6ZRG5	221 aa		4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	OR2T35	Q8NGX2	323 aa		4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	FXYD5	Q96DB9	178 aa		4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	ATP5S	Q99766	215 aa		4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	GGACT	Q9BVM4	153 aa		4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	HRH4	Q9H3N8	390 aa		4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	RPRM	Q9NS64	109 aa		4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	TP53TG3	Q9ULZ0	132 aa		4.07	□□□□□ -1.76
CPNE3-208	ENST00000614678	TRBV19	A0A075B6N1	114 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	FNDC10	F2Z333	226 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	RLN2	P04090	185 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	FHIT	P49789	147 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	RHOB	P62745	196 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	HBG1	P69891	147 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	HBG2	P69892	147 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	PSG9	Q00887	426 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	TP53TG1	Q9Y2A0	90 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	TRAV8-1	A0A0A6YYK1	113 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	PIGBOS1	A0A0B4J2F0	54 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	LCE6A	A0A183	80 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	IGLL5	B9A064	214 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	UBE2C	O00762	179 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	CD5	P06127	495 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	FABP1	P07148	127 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	RAN	P62826	216 aa	Known RBP	4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	GNG5	P63218	68 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	ICAM4	Q14773	271 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	FAM222A	Q5U5X8	452 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	GATAD1	Q8WUU5	269 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	TMPRSS5	Q9H3S3	457 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	RPH3AL	Q9UNE2	315 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	YTHDF2	Q9Y5A9	579 aa	Known RBP	4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	HTN3	P15516	51 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	BTN1A1	Q13410	526 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	EBLN2	Q6P2I7	272 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	BPIFA4P	Q86YQ2	179 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678		A0A087X0K7	114 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	TRAV12-3	A0A0B4J271	114 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	ARPC5	O15511	151 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	ID1	P41134	155 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	ZNF726P1	Q15940	193 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	GFI1B	Q5VTD9	330 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	AGPAT4-IT1	Q9H0P7	198 aa		4.06	□□□□□ -1.76
CPNE3-208	ENST00000614678	OR7C2	O60412	319 aa		4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678	ATP6V0C	P27449	155 aa		4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678	CEMP1	Q6PRD7	247 aa	Predicted RBP	4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678	SLC25A31	Q9H0C2	315 aa		4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678		A0A1B0GV50	99 aa		4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678	DEFB130B	P0DP73	79 aa		4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678	DEFB130A	P0DP74	79 aa		4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678	FGF8	P55075	233 aa	Predicted RBP	4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678	LOC102723971	A0A1B0GUV8	181 aa		4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678	CYCS	P99999	105 aa	Known RBP	4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678	SUN5	Q8TC36	379 aa		4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678	TVP23C	Q96ET8	276 aa		4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678	LINC00479	Q96M42	142 aa		4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678	OR51M1	Q9H341	326 aa		4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678	CYTL1	Q9NRR1	136 aa		4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678	KIAA1109	Q2LD37	5005 aa		4.05	□□□□□ -1.76
CPNE3-208	ENST00000614678		A8MTW9	85 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	CFD	P00746	253 aa	Predicted RBP	4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	NBEAP1	P0C6P0	100 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	RNF141	Q8WVD5	230 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	LINC00476	Q8WZB0	136 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	TNFSF18	Q9UNG2	199 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	FUT9	Q9Y231	359 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	HECTD4	Q9Y4D8	3996 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	CXCL2	P19875	107 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	TMEM208	Q9BTX3	173 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	PAXX	Q9BUH6	204 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	DKK2	Q9UBU2	259 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	BIRC6	Q9NR09	4857 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	ARL14EPL	P0DKL9	152 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	RAB31	Q13636	194 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	ATP6V1F	Q16864	119 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	MORN3	Q6PF18	240 aa	Predicted RBP	4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	LCN15	Q6UWW0	184 aa		4.04	□□□□□ -1.76
CPNE3-208	ENST00000614678	CMC4	P56277	68 aa	Predicted RBP	4.03	□□□□□ -1.76
CPNE3-208	ENST00000614678	ZNF266	Q14584	549 aa		4.03	□□□□□ -1.76
CPNE3-208	ENST00000614678	MUC21	Q5SSG8	566 aa		4.03	□□□□□ -1.76
CPNE3-208	ENST00000614678	TMEM75	Q8N9X5	138 aa		4.03	□□□□□ -1.76
CPNE3-208	ENST00000614678	OR1L4	Q8NGR5	311 aa		4.03	□□□□□ -1.76
CPNE3-208	ENST00000614678	ST6GAL2	Q96JF0	529 aa		4.03	□□□□□ -1.76
CPNE3-208	ENST00000614678	IGF2BP2-AS1	Q96M15	143 aa		4.03	□□□□□ -1.76
CPNE3-208	ENST00000614678	AQP10	Q96PS8	301 aa		4.03	□□□□□ -1.76
CPNE3-208	ENST00000614678	LINC01587	Q99440	93 aa		4.03	□□□□□ -1.76
CPNE3-208	ENST00000614678		Q9H3A6	140 aa		4.03	□□□□□ -1.76
CPNE3-208	ENST00000614678	C11orf68	Q9H3H3	251 aa	Known RBP	4.03	□□□□□ -1.76
CPNE3-208	ENST00000614678	NOP10	Q9NPE3	64 aa	Known RBP	4.03	□□□□□ -1.76
CPNE3-208	ENST00000614678	DNAH6	Q9C0G6	4158 aa		4.03	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms