RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 RNF141Q8WVD5 230 aa14.02□□□□□ -0.17
UPF1-212ENST00000601689 WFDC1Q9HC57 220 aa14.02□□□□□ -0.17
UPF1-212ENST00000601689 TEX48A0A1B0GUV7 120 aa14.01□□□□□ -0.17
UPF1-212ENST00000601689 ZNF705FA8MVS1 300 aaPredicted RBP14.01□□□□□ -0.17
UPF1-212ENST00000601689 C11orf94C9JXX5 98 aa14.01□□□□□ -0.17
UPF1-212ENST00000601689 M0R2Z0 102 aa14.01□□□□□ -0.17
UPF1-212ENST00000601689 CSN1S1P47710 185 aa14.01□□□□□ -0.17
UPF1-212ENST00000601689 CEMP1Q6PRD7 247 aaPredicted RBP14.01□□□□□ -0.17
UPF1-212ENST00000601689 AMTNQ6UX39 209 aa14.01□□□□□ -0.17
UPF1-212ENST00000601689 TMEM256Q8N2U0 113 aa14.01□□□□□ -0.17
UPF1-212ENST00000601689 HSD17B11Q8NBQ5 300 aa14.01□□□□□ -0.17
UPF1-212ENST00000601689 PHLDA1Q8WV24 401 aaPredicted RBP14.01□□□□□ -0.17
UPF1-212ENST00000601689 PSMG3Q9BT73 122 aaPredicted RBP14.01□□□□□ -0.17
UPF1-212ENST00000601689 RBMY1A1P0DJD3 496 aaKnown RBP14□□□□□ -0.17
UPF1-212ENST00000601689 RBMY1CP0DJD4 496 aa14□□□□□ -0.17
UPF1-212ENST00000601689 NANOS2P60321 138 aaKnown RBP14□□□□□ -0.17
UPF1-212ENST00000601689 UBE2L3P68036 154 aaKnown RBP14□□□□□ -0.17
UPF1-212ENST00000601689 SERF2P84101 59 aa14□□□□□ -0.17
UPF1-212ENST00000601689 RBMY1FQ15415 496 aaKnown RBP14□□□□□ -0.17
UPF1-212ENST00000601689 FAM74A1Q5RGS3 127 aa14□□□□□ -0.17
UPF1-212ENST00000601689 PQLC2Q6ZP29 291 aa14□□□□□ -0.17
UPF1-212ENST00000601689 OR10G4Q8NGN3 311 aa14□□□□□ -0.17
UPF1-212ENST00000601689 OR10G9Q8NGN4 311 aa14□□□□□ -0.17
UPF1-212ENST00000601689 OR10G7Q8NGN6 311 aa14□□□□□ -0.17
UPF1-212ENST00000601689 GNPNAT1Q96EK6 184 aaPredicted RBP14□□□□□ -0.17
UPF1-212ENST00000601689 FAM167A-AS1Q96KT0 104 aa14□□□□□ -0.17
UPF1-212ENST00000601689 TNFSF18Q9UNG2 199 aa14□□□□□ -0.17
UPF1-212ENST00000601689 TAAR5O14804 337 aa13.99□□□□□ -0.17
UPF1-212ENST00000601689 OR10J4P0C629 311 aa13.99□□□□□ -0.17
UPF1-212ENST00000601689 SPART-AS1P0CW21 52 aa13.99□□□□□ -0.17
UPF1-212ENST00000601689 LYPD1Q8N2G4 141 aa13.99□□□□□ -0.17
UPF1-212ENST00000601689 LEPP41159 167 aa13.98□□□□□ -0.17
UPF1-212ENST00000601689 ICAM4Q14773 271 aa13.98□□□□□ -0.17
UPF1-212ENST00000601689 Q5BKY6 102 aa13.98□□□□□ -0.17
UPF1-212ENST00000601689 LINC00477Q96M19 166 aa13.98□□□□□ -0.17
UPF1-212ENST00000601689 LINC01587Q99440 93 aa13.98□□□□□ -0.17
UPF1-212ENST00000601689 C20orf144Q9BQM9 153 aa13.98□□□□□ -0.17
UPF1-212ENST00000601689 LOC102723971A0A1B0GUV8 181 aa13.97□□□□□ -0.17
UPF1-212ENST00000601689 ARPC5O15511 151 aa13.97□□□□□ -0.17
UPF1-212ENST00000601689 EMP1P54849 157 aa13.97□□□□□ -0.17
UPF1-212ENST00000601689 FAM122CQ6P4D5 195 aa13.97□□□□□ -0.17
UPF1-212ENST00000601689 C1orf158Q8N1D5 194 aa13.97□□□□□ -0.17
UPF1-212ENST00000601689 RPP25LQ8N5L8 163 aaKnown RBP13.97□□□□□ -0.17
UPF1-212ENST00000601689 OR2G3Q8NGZ4 309 aa13.97□□□□□ -0.17
UPF1-212ENST00000601689 FXYD5Q96DB9 178 aa13.97□□□□□ -0.17
UPF1-212ENST00000601689 ODF3Q96PU9 254 aa13.97□□□□□ -0.17
UPF1-212ENST00000601689 TRAV12-2A0A075B6T6 113 aa13.96□□□□□ -0.17
UPF1-212ENST00000601689 NDUFB4O95168 129 aa13.96□□□□□ -0.17
UPF1-212ENST00000601689 ATP6V0CP27449 155 aa13.96□□□□□ -0.17
UPF1-212ENST00000601689 CDC34P49427 236 aaPredicted RBP13.96□□□□□ -0.17
UPF1-212ENST00000601689 RANP62826 216 aaKnown RBP13.96□□□□□ -0.17
UPF1-212ENST00000601689 TMEM78Q5T7P6 136 aa13.96□□□□□ -0.17
UPF1-212ENST00000601689 BAP18Q8IXM2 172 aa13.96□□□□□ -0.17
UPF1-212ENST00000601689 EXOC3-AS1Q8N2X6 119 aa13.96□□□□□ -0.17
UPF1-212ENST00000601689 RNF222A6NCQ9 220 aa13.95□□□□□ -0.18
UPF1-212ENST00000601689 NPIPB6E9PJ23 425 aa13.95□□□□□ -0.18
UPF1-212ENST00000601689 M0R3E3 92 aa13.95□□□□□ -0.18
UPF1-212ENST00000601689 CMTM2Q8TAZ6 248 aa13.95□□□□□ -0.18
UPF1-212ENST00000601689 RXFP4Q8TDU9 374 aa13.95□□□□□ -0.18
UPF1-212ENST00000601689 C2CD4CQ8TF44 421 aa13.95□□□□□ -0.18
UPF1-212ENST00000601689 TRAV10A0A0B4J240 114 aa13.94□□□□□ -0.18
UPF1-212ENST00000601689 PRAC2D3DTV9 90 aa13.94□□□□□ -0.18
UPF1-212ENST00000601689 H7BYZ3 331 aa13.94□□□□□ -0.18
UPF1-212ENST00000601689 CRXO43186 299 aaPredicted RBP13.94□□□□□ -0.18
UPF1-212ENST00000601689 TCTAP57738 103 aa13.94□□□□□ -0.18
UPF1-212ENST00000601689 TAS2R60P59551 318 aa13.94□□□□□ -0.18
UPF1-212ENST00000601689 RAB2AP61019 212 aa13.94□□□□□ -0.18
UPF1-212ENST00000601689 CCDC28AQ8IWP9 274 aa13.94□□□□□ -0.18
UPF1-212ENST00000601689 NIPSNAP3BQ9BS92 247 aa13.94□□□□□ -0.18
UPF1-212ENST00000601689 ACTR3CQ9C0K3 210 aaPredicted RBP13.94□□□□□ -0.18
UPF1-212ENST00000601689 LCE6AA0A183 80 aa13.93□□□□□ -0.18
UPF1-212ENST00000601689 HTN1P15515 57 aa13.93□□□□□ -0.18
UPF1-212ENST00000601689 RPL7L1Q6DKI1 246 aaKnown RBP13.93□□□□□ -0.18
UPF1-212ENST00000601689 Q9H3A6 140 aa13.93□□□□□ -0.18
UPF1-212ENST00000601689 CSMD3Q7Z407 3707 aa13.92□□□□□ -0.18
UPF1-212ENST00000601689 SLC25A5P05141 298 aaKnown RBP13.92□□□□□ -0.18
UPF1-212ENST00000601689 PRB4P10163 310 aaPredicted RBP13.92□□□□□ -0.18
UPF1-212ENST00000601689 AKR1C8PQ5T2L2 129 aa13.92□□□□□ -0.18
UPF1-212ENST00000601689 PHYHIPLQ96FC7 376 aa13.92□□□□□ -0.18
UPF1-212ENST00000601689 STARD9Q9P2P6 4700 aa13.92□□□□□ -0.18
UPF1-212ENST00000601689 ZNF705GA8MUZ8 300 aaPredicted RBP13.91□□□□□ -0.18
UPF1-212ENST00000601689 J3KRW8 73 aa13.91□□□□□ -0.18
UPF1-212ENST00000601689 CT45A10P0DMU9 189 aa13.91□□□□□ -0.18
UPF1-212ENST00000601689 ZNF493Q6ZR52 646 aa13.91□□□□□ -0.18
UPF1-212ENST00000601689 C9orf47Q6ZRZ4 202 aa13.91□□□□□ -0.18
UPF1-212ENST00000601689 C16orf74Q96GX8 76 aa13.91□□□□□ -0.18
UPF1-212ENST00000601689 ARPC5LQ9BPX5 153 aa13.91□□□□□ -0.18
UPF1-212ENST00000601689 OTORQ9NRC9 128 aa13.91□□□□□ -0.18
UPF1-212ENST00000601689 YTHDF2Q9Y5A9 579 aaKnown RBP13.91□□□□□ -0.18
UPF1-212ENST00000601689 A0A0D9SG52 128 aa13.9□□□□□ -0.18
UPF1-212ENST00000601689 RBAKDNA6NC62 111 aa13.9□□□□□ -0.18
UPF1-212ENST00000601689 HMSDA8MTL9 139 aa13.9□□□□□ -0.18
UPF1-212ENST00000601689 CXorf1O96002 111 aa13.9□□□□□ -0.18
UPF1-212ENST00000601689 ZNF345Q14585 488 aa13.9□□□□□ -0.18
UPF1-212ENST00000601689 FAM222AQ5U5X8 452 aa13.9□□□□□ -0.18
UPF1-212ENST00000601689 Q6ZTC4 211 aa13.9□□□□□ -0.18
UPF1-212ENST00000601689 RAB24Q969Q5 203 aa13.9□□□□□ -0.18
UPF1-212ENST00000601689 ZNF503Q96F45 646 aa13.9□□□□□ -0.18
UPF1-212ENST00000601689 TMEM167BQ9NRX6 74 aa13.9□□□□□ -0.18
UPF1-212ENST00000601689 DKK2Q9UBU2 259 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms