RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 TMEM144Q7Z5S9 345 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 OR8I2Q8N0Y5 310 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 CLUHP3Q96NS8 147 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 UHRF2Q96PU4 802 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 TMEM147Q9BVK8 224 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 KRTAP17-1Q9BYP8 105 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 SLC25A22Q9H936 323 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 UQCC1Q9NVA1 299 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 LRP1BQ9NZR2 4599 aa7.46□□□□□ -1.22
LIG1-213ENST00000596672 ISLRO14498 428 aa7.46□□□□□ -1.22
LIG1-213ENST00000596672 SEC11BP0C7V7 166 aa7.46□□□□□ -1.22
LIG1-213ENST00000596672 FGF7P21781 194 aa7.46□□□□□ -1.22
LIG1-213ENST00000596672 SMUG1Q53HV7 270 aa7.46□□□□□ -1.22
LIG1-213ENST00000596672 MORN5Q5VZ52 161 aa7.46□□□□□ -1.22
LIG1-213ENST00000596672 CYP2G1PQ6ZSU1 146 aa7.46□□□□□ -1.22
LIG1-213ENST00000596672 OR4B1Q8NGF8 309 aa7.46□□□□□ -1.22
LIG1-213ENST00000596672 OR2G3Q8NGZ4 309 aa7.46□□□□□ -1.22
LIG1-213ENST00000596672 NEU1Q99519 415 aa7.46□□□□□ -1.22
LIG1-213ENST00000596672 SHANK2-AS3Q9BTD1 123 aa7.46□□□□□ -1.22
LIG1-213ENST00000596672 WDR61Q9GZS3 305 aaKnown RBP7.46□□□□□ -1.22
LIG1-213ENST00000596672 IGHV3OR16-12A0A075B7B8 117 aa7.45□□□□□ -1.22
LIG1-213ENST00000596672 TRAV10A0A0B4J240 114 aa7.45□□□□□ -1.22
LIG1-213ENST00000596672 SCO1O75880 301 aa7.45□□□□□ -1.22
LIG1-213ENST00000596672 SNRPCP09234 159 aaKnown RBP7.45□□□□□ -1.22
LIG1-213ENST00000596672 EMP1P54849 157 aa7.45□□□□□ -1.22
LIG1-213ENST00000596672 PLP1P60201 277 aa7.45□□□□□ -1.22
LIG1-213ENST00000596672 DLK1P80370 383 aa7.45□□□□□ -1.22
LIG1-213ENST00000596672 BTN1A1Q13410 526 aa7.45□□□□□ -1.22
LIG1-213ENST00000596672 VWC2Q2TAL6 325 aa7.45□□□□□ -1.22
LIG1-213ENST00000596672 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.45□□□□□ -1.22
LIG1-213ENST00000596672 OR1B1Q8NGR6 318 aa7.45□□□□□ -1.22
LIG1-213ENST00000596672 RNF141Q8WVD5 230 aa7.45□□□□□ -1.22
LIG1-213ENST00000596672 GNPNAT1Q96EK6 184 aaPredicted RBP7.45□□□□□ -1.22
LIG1-213ENST00000596672 GGACTQ9BVM4 153 aa7.45□□□□□ -1.22
LIG1-213ENST00000596672 SLC25A39Q9BZJ4 359 aaPredicted RBP7.45□□□□□ -1.22
LIG1-213ENST00000596672 SLC45A2Q9UMX9 530 aa7.45□□□□□ -1.22
LIG1-213ENST00000596672 DNAH5Q8TE73 4624 aa7.44□□□□□ -1.22
LIG1-213ENST00000596672 DEFB131BA0A096LNP1 70 aa7.44□□□□□ -1.22
LIG1-213ENST00000596672 PLAC8L1A1L4L8 177 aa7.44□□□□□ -1.22
LIG1-213ENST00000596672 C11orf94C9JXX5 98 aa7.44□□□□□ -1.22
LIG1-213ENST00000596672 M0R2Z0 102 aa7.44□□□□□ -1.22
LIG1-213ENST00000596672 LINC00869P0C866 280 aa7.44□□□□□ -1.22
LIG1-213ENST00000596672 SULT1A2P50226 295 aa7.44□□□□□ -1.22
LIG1-213ENST00000596672 CNN1P51911 297 aaKnown RBP7.44□□□□□ -1.22
LIG1-213ENST00000596672 PSG9Q00887 426 aa7.44□□□□□ -1.22
LIG1-213ENST00000596672 AKR1C1Q04828 323 aa7.44□□□□□ -1.22
LIG1-213ENST00000596672 KIR3DS1Q14943 382 aa7.44□□□□□ -1.22
LIG1-213ENST00000596672 PXDC1Q5TGL8 231 aa7.44□□□□□ -1.22
LIG1-213ENST00000596672 BPIFCQ8NFQ6 507 aa7.44□□□□□ -1.22
LIG1-213ENST00000596672 SAT2Q96F10 170 aaPredicted RBP7.44□□□□□ -1.22
LIG1-213ENST00000596672 C16orf92Q96LL3 132 aa7.44□□□□□ -1.22
LIG1-213ENST00000596672 PARD6GQ9BYG4 376 aaPredicted RBP7.44□□□□□ -1.22
LIG1-213ENST00000596672 DKK2Q9UBU2 259 aa7.44□□□□□ -1.22
LIG1-213ENST00000596672 PRELID1Q9Y255 219 aa7.44□□□□□ -1.22
LIG1-213ENST00000596672 APOC3P02656 99 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 AMBPP02760 352 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 FABP1P07148 127 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 AZU1P20160 251 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 ID1P41134 155 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 CAMLGP49069 296 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 FHITP49789 147 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 AKR1C8PQ5T2L2 129 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 FAM222AQ5U5X8 452 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 SVBPQ8N300 66 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 FAM213BQ8TBF2 198 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 TMEM37Q8WXS4 190 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 MGST2Q99735 147 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 C1QTNF4Q9BXJ3 329 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 NPVFQ9HCQ7 196 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 WDR83OSQ9Y284 106 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 MUC4Q99102 2169 aa7.43□□□□□ -1.22
LIG1-213ENST00000596672 ZNF705GA8MUZ8 300 aaPredicted RBP7.42□□□□□ -1.22
LIG1-213ENST00000596672 PRAC2D3DTV9 90 aa7.42□□□□□ -1.22
LIG1-213ENST00000596672 H3BTX0 84 aa7.42□□□□□ -1.22
LIG1-213ENST00000596672 SLC17A3O00476 420 aa7.42□□□□□ -1.22
LIG1-213ENST00000596672 HYPMO75409 117 aa7.42□□□□□ -1.22
LIG1-213ENST00000596672 GALR1P47211 349 aa7.42□□□□□ -1.22
LIG1-213ENST00000596672 TCTAP57738 103 aa7.42□□□□□ -1.22
LIG1-213ENST00000596672 NUTF2P61970 127 aaKnown RBP7.42□□□□□ -1.22
LIG1-213ENST00000596672 BLOC1S1P78537 153 aa7.42□□□□□ -1.22
LIG1-213ENST00000596672 SPINK13Q1W4C9 94 aa7.42□□□□□ -1.22
LIG1-213ENST00000596672 PSMG3Q9BT73 122 aaPredicted RBP7.42□□□□□ -1.22
LIG1-213ENST00000596672 NPCDR1Q9BY65 106 aa7.42□□□□□ -1.22
LIG1-213ENST00000596672 NKX6-2Q9C056 277 aaPredicted RBP7.42□□□□□ -1.22
LIG1-213ENST00000596672 YTHDF2Q9Y5A9 579 aaKnown RBP7.42□□□□□ -1.22
LIG1-213ENST00000596672 TRAV12-2A0A075B6T6 113 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 A0A087X0K7 114 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 TRAV5A0A0B4J249 113 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 LOC102723971A0A1B0GUV8 181 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 A0A1B0GVY2 172 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 TMEM218A2RU14 115 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 SMIM9A6NGZ8 99 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 UMAD1C9J7I0 102 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 FNDC10F2Z333 226 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 C17orf112F2Z3M2 114 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 H3BQ15 152 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 AGPAT2O15120 278 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 RTL8CO15255 209 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 RAB5CP51148 216 aa7.41□□□□□ -1.22
LIG1-213ENST00000596672 FLI1Q01543 452 aaPredicted RBP7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms