RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 FAM167A-AS1Q96KT0 104 aa8.99□□□□□ -0.97
UPF1-203ENST00000594504 PSMG3Q9BT73 122 aaPredicted RBP8.99□□□□□ -0.97
UPF1-203ENST00000594504 C1QTNF4Q9BXJ3 329 aa8.99□□□□□ -0.97
UPF1-203ENST00000594504 ZNF586Q9NXT0 402 aa8.99□□□□□ -0.97
UPF1-203ENST00000594504 TRAV10A0A0B4J240 114 aa8.98□□□□□ -0.97
UPF1-203ENST00000594504 TAAR5O14804 337 aa8.98□□□□□ -0.97
UPF1-203ENST00000594504 DUSP14O95147 198 aaKnown RBP8.98□□□□□ -0.97
UPF1-203ENST00000594504 IGKV3-20P01619 116 aa8.98□□□□□ -0.97
UPF1-203ENST00000594504 PYYP10082 97 aa8.98□□□□□ -0.97
UPF1-203ENST00000594504 ATP6V0CP27449 155 aa8.98□□□□□ -0.97
UPF1-203ENST00000594504 TAS2R45P59539 299 aa8.98□□□□□ -0.97
UPF1-203ENST00000594504 C12orf74Q32Q52 190 aa8.98□□□□□ -0.97
UPF1-203ENST00000594504 RPL7L1Q6DKI1 246 aaKnown RBP8.98□□□□□ -0.97
UPF1-203ENST00000594504 OR2G3Q8NGZ4 309 aa8.98□□□□□ -0.97
UPF1-203ENST00000594504 GNPNAT1Q96EK6 184 aaPredicted RBP8.98□□□□□ -0.97
UPF1-203ENST00000594504 OR51M1Q9H341 326 aa8.98□□□□□ -0.97
UPF1-203ENST00000594504 XCL2Q9UBD3 114 aa8.98□□□□□ -0.97
UPF1-203ENST00000594504 RFNGQ9Y644 331 aa8.98□□□□□ -0.97
UPF1-203ENST00000594504 DNAH10Q8IVF4 4471 aa8.98□□□□□ -0.97
UPF1-203ENST00000594504 HMSDA8MTL9 139 aa8.97□□□□□ -0.97
UPF1-203ENST00000594504 A8MTW9 85 aa8.97□□□□□ -0.97
UPF1-203ENST00000594504 FXYD7P58549 80 aa8.97□□□□□ -0.97
UPF1-203ENST00000594504 SERF2P84101 59 aa8.97□□□□□ -0.97
UPF1-203ENST00000594504 PSG9Q00887 426 aa8.97□□□□□ -0.97
UPF1-203ENST00000594504 ZNF345Q14585 488 aa8.97□□□□□ -0.97
UPF1-203ENST00000594504 KHDC3LQ587J8 217 aa8.97□□□□□ -0.97
UPF1-203ENST00000594504 OR8A1Q8NGG7 326 aa8.97□□□□□ -0.97
UPF1-203ENST00000594504 RPUSD4Q96CM3 377 aaKnown RBP8.97□□□□□ -0.97
UPF1-203ENST00000594504 PAXXQ9BUH6 204 aa8.97□□□□□ -0.97
UPF1-203ENST00000594504 A0A1W2PPV4 95 aa8.96□□□□□ -0.98
UPF1-203ENST00000594504 OR7C2O60412 319 aa8.96□□□□□ -0.98
UPF1-203ENST00000594504 NDUFB4O95168 129 aa8.96□□□□□ -0.98
UPF1-203ENST00000594504 MBP02144 154 aa8.96□□□□□ -0.98
UPF1-203ENST00000594504 NBEAP1P0C6P0 100 aa8.96□□□□□ -0.98
UPF1-203ENST00000594504 CNN1P51911 297 aaKnown RBP8.96□□□□□ -0.98
UPF1-203ENST00000594504 RAB2AP61019 212 aa8.96□□□□□ -0.98
UPF1-203ENST00000594504 HIST1H1AQ02539 215 aaPredicted RBP8.96□□□□□ -0.98
UPF1-203ENST00000594504 AMTNQ6UX39 209 aa8.96□□□□□ -0.98
UPF1-203ENST00000594504 KCNRGQ8N5I3 272 aa8.96□□□□□ -0.98
UPF1-203ENST00000594504 OR11H4Q8NGC9 324 aa8.96□□□□□ -0.98
UPF1-203ENST00000594504 OR10G4Q8NGN3 311 aa8.96□□□□□ -0.98
UPF1-203ENST00000594504 OR10G9Q8NGN4 311 aa8.96□□□□□ -0.98
UPF1-203ENST00000594504 OR10G7Q8NGN6 311 aa8.96□□□□□ -0.98
UPF1-203ENST00000594504 BLNKQ8WV28 456 aa8.96□□□□□ -0.98
UPF1-203ENST00000594504 RNF141Q8WVD5 230 aa8.96□□□□□ -0.98
UPF1-203ENST00000594504 ST6GAL2Q96JF0 529 aa8.96□□□□□ -0.98
UPF1-203ENST00000594504 DEFB131BA0A096LNP1 70 aa8.95□□□□□ -0.98
UPF1-203ENST00000594504 OR10J4P0C629 311 aa8.95□□□□□ -0.98
UPF1-203ENST00000594504 ZNF705DP0CH99 300 aaPredicted RBP8.95□□□□□ -0.98
UPF1-203ENST00000594504 ZNF705BP0CI00 300 aaPredicted RBP8.95□□□□□ -0.98
UPF1-203ENST00000594504 UBE2L3P68036 154 aaKnown RBP8.95□□□□□ -0.98
UPF1-203ENST00000594504 FAM122CQ6P4D5 195 aa8.95□□□□□ -0.98
UPF1-203ENST00000594504 FXYD5Q96DB9 178 aa8.95□□□□□ -0.98
UPF1-203ENST00000594504 MRPL53Q96EL3 112 aaKnown RBP8.95□□□□□ -0.98
UPF1-203ENST00000594504 ZNF503Q96F45 646 aa8.95□□□□□ -0.98
UPF1-203ENST00000594504 ARPC5LQ9BPX5 153 aa8.95□□□□□ -0.98
UPF1-203ENST00000594504 SLC35B3Q9H1N7 401 aa8.95□□□□□ -0.98
UPF1-203ENST00000594504 SH3BGRL3Q9H299 93 aa8.95□□□□□ -0.98
UPF1-203ENST00000594504 AAMDCQ9H7C9 122 aa8.95□□□□□ -0.98
UPF1-203ENST00000594504 PRELID1Q9Y255 219 aa8.95□□□□□ -0.98
UPF1-203ENST00000594504 VPS13DQ5THJ4 4388 aa8.94□□□□□ -0.98
UPF1-203ENST00000594504 A0A0D9SG52 128 aa8.94□□□□□ -0.98
UPF1-203ENST00000594504 ZNF705FA8MVS1 300 aaPredicted RBP8.94□□□□□ -0.98
UPF1-203ENST00000594504 M0R2N4 97 aa8.94□□□□□ -0.98
UPF1-203ENST00000594504 AMBPP02760 352 aa8.94□□□□□ -0.98
UPF1-203ENST00000594504 CDC34P49427 236 aaPredicted RBP8.94□□□□□ -0.98
UPF1-203ENST00000594504 PQLC2Q6ZP29 291 aa8.94□□□□□ -0.98
UPF1-203ENST00000594504 TCTE3Q8IZS6 198 aa8.94□□□□□ -0.98
UPF1-203ENST00000594504 OR10J6PQ8NGY7 276 aa8.94□□□□□ -0.98
UPF1-203ENST00000594504 CYTL1Q9NRR1 136 aa8.94□□□□□ -0.98
UPF1-203ENST00000594504 PLA2G2EQ9NZK7 142 aa8.94□□□□□ -0.98
UPF1-203ENST00000594504 HERC2O95714 4834 aa8.94□□□□□ -0.98
UPF1-203ENST00000594504 IGHV3OR16-12A0A075B7B8 117 aa8.93□□□□□ -0.98
UPF1-203ENST00000594504 BOLA2-SMG1P6H3BVE0 249 aa8.93□□□□□ -0.98
UPF1-203ENST00000594504 EMP1P54849 157 aa8.93□□□□□ -0.98
UPF1-203ENST00000594504 LYPD1Q8N2G4 141 aa8.93□□□□□ -0.98
UPF1-203ENST00000594504 PHYHIPLQ96FC7 376 aa8.93□□□□□ -0.98
UPF1-203ENST00000594504 hCG_2014768A0A024R1R8 64 aa8.92□□□□□ -0.98
UPF1-203ENST00000594504 PRAC2D3DTV9 90 aa8.92□□□□□ -0.98
UPF1-203ENST00000594504 M0R3E3 92 aa8.92□□□□□ -0.98
UPF1-203ENST00000594504 BCL2L11O43521 198 aa8.92□□□□□ -0.98
UPF1-203ENST00000594504 EIF3GO75821 320 aaKnown RBP eCLIP8.92□□□□□ -0.98
UPF1-203ENST00000594504 PRB4P10163 310 aaPredicted RBP8.92□□□□□ -0.98
UPF1-203ENST00000594504 ICAM4Q14773 271 aa8.92□□□□□ -0.98
UPF1-203ENST00000594504 SPINK13Q1W4C9 94 aa8.92□□□□□ -0.98
UPF1-203ENST00000594504 ZNF705AQ6ZN79 300 aaPredicted RBP8.92□□□□□ -0.98
UPF1-203ENST00000594504 EXOC3-AS1Q8N2X6 119 aa8.92□□□□□ -0.98
UPF1-203ENST00000594504 RAB24Q969Q5 203 aa8.92□□□□□ -0.98
UPF1-203ENST00000594504 IGF2BP2-AS1Q96M15 143 aa8.92□□□□□ -0.98
UPF1-203ENST00000594504 ACTR3CQ9C0K3 210 aaPredicted RBP8.92□□□□□ -0.98
UPF1-203ENST00000594504 PPP1R14DQ9NXH3 145 aa8.92□□□□□ -0.98
UPF1-203ENST00000594504 DNAH6Q9C0G6 4158 aa8.91□□□□□ -0.98
UPF1-203ENST00000594504 A0A1B0GVY2 172 aa8.91□□□□□ -0.98
UPF1-203ENST00000594504 KANTRA0A1W2PQU2 76 aa8.91□□□□□ -0.98
UPF1-203ENST00000594504 NPIPB6E9PJ23 425 aa8.91□□□□□ -0.98
UPF1-203ENST00000594504 M0R2Z0 102 aa8.91□□□□□ -0.98
UPF1-203ENST00000594504 HMGB3O15347 200 aaKnown RBP8.91□□□□□ -0.98
UPF1-203ENST00000594504 STAG3L2P0CL84 134 aa8.91□□□□□ -0.98
UPF1-203ENST00000594504 STAG3L3P0CL85 134 aa8.91□□□□□ -0.98
UPF1-203ENST00000594504 AKR1C8PQ5T2L2 129 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 145.2 ms