RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 C18orf15Q96N68 181 aa8.1□□□□□ -1.11
CLIP3-204ENST00000590559 ODF3Q96PU9 254 aa8.1□□□□□ -1.11
CLIP3-204ENST00000590559 MRPS16Q9Y3D3 137 aaKnown RBP8.1□□□□□ -1.11
CLIP3-204ENST00000590559 MYCBP2O75592 4640 aa8.09□□□□□ -1.11
CLIP3-204ENST00000590559 LINC00854A0A1B0GVQ3 168 aa8.09□□□□□ -1.11
CLIP3-204ENST00000590559 NPIPB6E9PJ23 425 aa8.09□□□□□ -1.11
CLIP3-204ENST00000590559 SNRPCP09234 159 aaKnown RBP8.09□□□□□ -1.11
CLIP3-204ENST00000590559 CT45A10P0DMU9 189 aa8.09□□□□□ -1.11
CLIP3-204ENST00000590559 DAZ2Q13117 558 aaKnown RBP8.09□□□□□ -1.11
CLIP3-204ENST00000590559 OR5I1Q13606 314 aa8.09□□□□□ -1.11
CLIP3-204ENST00000590559 OPCMLQ14982 345 aa8.09□□□□□ -1.11
CLIP3-204ENST00000590559 Q6ZRN7 208 aaPredicted RBP8.09□□□□□ -1.11
CLIP3-204ENST00000590559 ZNF431Q8TF32 576 aaPredicted RBP8.09□□□□□ -1.11
CLIP3-204ENST00000590559 VSIG2Q96IQ7 327 aa8.09□□□□□ -1.11
CLIP3-204ENST00000590559 SDHCQ99643 169 aaPredicted RBP8.09□□□□□ -1.11
CLIP3-204ENST00000590559 RBM38Q9H0Z9 239 aaKnown RBP8.09□□□□□ -1.11
CLIP3-204ENST00000590559 C11orf1Q9H5F2 150 aa8.09□□□□□ -1.11
CLIP3-204ENST00000590559 MGAT4CQ9UBM8 478 aa8.09□□□□□ -1.11
CLIP3-204ENST00000590559 PXMP4Q9Y6I8 212 aa8.09□□□□□ -1.11
CLIP3-204ENST00000590559 GAGE12BA1L429 117 aa8.08□□□□□ -1.12
CLIP3-204ENST00000590559 H3BTX0 84 aa8.08□□□□□ -1.12
CLIP3-204ENST00000590559 GOSR2O14653 212 aa8.08□□□□□ -1.12
CLIP3-204ENST00000590559 GAGE7O76087 117 aa8.08□□□□□ -1.12
CLIP3-204ENST00000590559 MBPP02686 304 aaPredicted RBP8.08□□□□□ -1.12
CLIP3-204ENST00000590559 GAGE12FP0CL80 117 aa8.08□□□□□ -1.12
CLIP3-204ENST00000590559 GAGE12GP0CL81 117 aa8.08□□□□□ -1.12
CLIP3-204ENST00000590559 GAGE12IP0CL82 117 aa8.08□□□□□ -1.12
CLIP3-204ENST00000590559 S100A5P33763 92 aa8.08□□□□□ -1.12
CLIP3-204ENST00000590559 IAH1Q2TAA2 248 aaPredicted RBP8.08□□□□□ -1.12
CLIP3-204ENST00000590559 MITD1Q8WV92 249 aa8.08□□□□□ -1.12
CLIP3-204ENST00000590559 FAM19A4Q96LR4 140 aa8.08□□□□□ -1.12
CLIP3-204ENST00000590559 A0A096LPF7 62 aa8.07□□□□□ -1.12
CLIP3-204ENST00000590559 A0A0J9YY99 117 aa8.07□□□□□ -1.12
CLIP3-204ENST00000590559 COX7A2P2O60397 106 aa8.07□□□□□ -1.12
CLIP3-204ENST00000590559 ZNF324O75467 553 aaPredicted RBP8.07□□□□□ -1.12
CLIP3-204ENST00000590559 RLN2P04090 185 aa8.07□□□□□ -1.12
CLIP3-204ENST00000590559 Q6ZTI0 123 aa8.07□□□□□ -1.12
CLIP3-204ENST00000590559 CCDC28AQ8IWP9 274 aa8.07□□□□□ -1.12
CLIP3-204ENST00000590559 C11orf72Q8NBR9 251 aa8.07□□□□□ -1.12
CLIP3-204ENST00000590559 PYGO2Q9BRQ0 406 aa8.07□□□□□ -1.12
CLIP3-204ENST00000590559 LINC00467Q9BRT7 94 aa8.07□□□□□ -1.12
CLIP3-204ENST00000590559 TMPRSS5Q9H3S3 457 aa8.07□□□□□ -1.12
CLIP3-204ENST00000590559 SCRT2Q9NQ03 307 aa8.07□□□□□ -1.12
CLIP3-204ENST00000590559 DNAH8Q96JB1 4490 aa8.06□□□□□ -1.12
CLIP3-204ENST00000590559 TRAV5A0A0B4J249 113 aa8.06□□□□□ -1.12
CLIP3-204ENST00000590559 TRAV12-3A0A0B4J271 114 aa8.06□□□□□ -1.12
CLIP3-204ENST00000590559 SNURFLB1AK76 121 aa8.06□□□□□ -1.12
CLIP3-204ENST00000590559 KLLNB2CW77 178 aa8.06□□□□□ -1.12
CLIP3-204ENST00000590559 ZNF253O75346 499 aa8.06□□□□□ -1.12
CLIP3-204ENST00000590559 SCGB1D2O95969 90 aa8.06□□□□□ -1.12
CLIP3-204ENST00000590559 GUK1Q16774 197 aa8.06□□□□□ -1.12
CLIP3-204ENST00000590559 VWC2Q2TAL6 325 aa8.06□□□□□ -1.12
CLIP3-204ENST00000590559 SPANXN2Q5MJ10 180 aa8.06□□□□□ -1.12
CLIP3-204ENST00000590559 C10orf113Q5VZT2 155 aa8.06□□□□□ -1.12
CLIP3-204ENST00000590559 DNAJC4Q9NNZ3 241 aa8.06□□□□□ -1.12
CLIP3-204ENST00000590559 ZNF586Q9NXT0 402 aa8.06□□□□□ -1.12
CLIP3-204ENST00000590559 SRRM2Q9UQ35 2752 aaKnown RBP8.05□□□□□ -1.12
CLIP3-204ENST00000590559 LEPP41159 167 aa8.05□□□□□ -1.12
CLIP3-204ENST00000590559 CAMLGP49069 296 aa8.05□□□□□ -1.12
CLIP3-204ENST00000590559 NRARPQ7Z6K4 114 aa8.05□□□□□ -1.12
CLIP3-204ENST00000590559 CHAC2Q8WUX2 184 aa8.05□□□□□ -1.12
CLIP3-204ENST00000590559 MRPL53Q96EL3 112 aaKnown RBP8.05□□□□□ -1.12
CLIP3-204ENST00000590559 WDR83OSQ9Y284 106 aa8.05□□□□□ -1.12
CLIP3-204ENST00000590559 TRBV19A0A075B6N1 114 aa8.04□□□□□ -1.12
CLIP3-204ENST00000590559 NDUFB4O95168 129 aa8.04□□□□□ -1.12
CLIP3-204ENST00000590559 SLC25A5P05141 298 aaKnown RBP8.04□□□□□ -1.12
CLIP3-204ENST00000590559 RPL29P47914 159 aaKnown RBP8.04□□□□□ -1.12
CLIP3-204ENST00000590559 LINC00315P59091 139 aa8.04□□□□□ -1.12
CLIP3-204ENST00000590559 ANXA2RQ3ZCQ2 193 aa8.04□□□□□ -1.12
CLIP3-204ENST00000590559 MIC13Q5XKP0 118 aa8.04□□□□□ -1.12
CLIP3-204ENST00000590559 GSKIPQ9P0R6 139 aa8.04□□□□□ -1.12
CLIP3-204ENST00000590559 C7orf71A4D174 169 aa8.03□□□□□ -1.12
CLIP3-204ENST00000590559 J3KRW8 73 aa8.03□□□□□ -1.12
CLIP3-204ENST00000590559 M0R3E3 92 aa8.03□□□□□ -1.12
CLIP3-204ENST00000590559 SPINK4O60575 86 aa8.03□□□□□ -1.12
CLIP3-204ENST00000590559 CRISP2P16562 243 aa8.03□□□□□ -1.12
CLIP3-204ENST00000590559 CD300CQ08708 224 aa8.03□□□□□ -1.12
CLIP3-204ENST00000590559 IL15RAQ13261 267 aa8.03□□□□□ -1.12
CLIP3-204ENST00000590559 CNPY1Q3B7I2 92 aa8.03□□□□□ -1.12
CLIP3-204ENST00000590559 TRIQKQ629K1 86 aa8.03□□□□□ -1.12
CLIP3-204ENST00000590559 Q6ZRG5 221 aa8.03□□□□□ -1.12
CLIP3-204ENST00000590559 ZNF680Q8NEM1 530 aa8.03□□□□□ -1.12
CLIP3-204ENST00000590559 OR1L4Q8NGR5 311 aa8.03□□□□□ -1.12
CLIP3-204ENST00000590559 PFDN5Q99471 154 aa8.03□□□□□ -1.12
CLIP3-204ENST00000590559 GSN-AS1Q9NRJ2 163 aa8.03□□□□□ -1.12
CLIP3-204ENST00000590559 TMEM14CQ9P0S9 112 aa8.03□□□□□ -1.12
CLIP3-204ENST00000590559 CCSO14618 274 aa8.02□□□□□ -1.13
CLIP3-204ENST00000590559 PLA2G10O15496 165 aa8.02□□□□□ -1.13
CLIP3-204ENST00000590559 IL7P13232 177 aa8.02□□□□□ -1.13
CLIP3-204ENST00000590559 TCL1AP56279 114 aa8.02□□□□□ -1.13
CLIP3-204ENST00000590559 ERCC8Q13216 396 aa8.02□□□□□ -1.13
CLIP3-204ENST00000590559 PDE6HQ13956 83 aa8.02□□□□□ -1.13
CLIP3-204ENST00000590559 C9orf47Q6ZRZ4 202 aa8.02□□□□□ -1.13
CLIP3-204ENST00000590559 EIF4E3Q8N5X7 224 aaKnown RBP8.02□□□□□ -1.13
CLIP3-204ENST00000590559 LINC00477Q96M19 166 aa8.02□□□□□ -1.13
CLIP3-204ENST00000590559 AGPAT4-IT1Q9H0P7 198 aa8.02□□□□□ -1.13
CLIP3-204ENST00000590559 C20orf85Q9H1P6 137 aa8.02□□□□□ -1.13
CLIP3-204ENST00000590559 SLC39A9Q9NUM3 307 aa8.02□□□□□ -1.13
CLIP3-204ENST00000590559 UQCC1Q9NVA1 299 aa8.02□□□□□ -1.13
CLIP3-204ENST00000590559 KLF12Q9Y4X4 402 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms