RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 IGLV1-51P01701 117 aa11.5□□□□□ -0.57
SS18-215ENST00000580642 EDN2P20800 178 aa11.5□□□□□ -0.57
SS18-215ENST00000580642 CNN1P51911 297 aaKnown RBP11.5□□□□□ -0.57
SS18-215ENST00000580642 TAS2R60P59551 318 aa11.5□□□□□ -0.57
SS18-215ENST00000580642 PSG3Q16557 428 aa11.5□□□□□ -0.57
SS18-215ENST00000580642 LCN12Q6JVE5 192 aa11.5□□□□□ -0.57
SS18-215ENST00000580642 EXOC3-AS1Q8N2X6 119 aa11.5□□□□□ -0.57
SS18-215ENST00000580642 C2CD4CQ8TF44 421 aa11.5□□□□□ -0.57
SS18-215ENST00000580642 SMIM12Q96EX1 92 aa11.5□□□□□ -0.57
SS18-215ENST00000580642 GPR61Q9BZJ8 451 aa11.5□□□□□ -0.57
SS18-215ENST00000580642 SCO2A0A1W2PP80 73 aa11.49□□□□□ -0.57
SS18-215ENST00000580642 DIRC3C9JPN6 131 aa11.49□□□□□ -0.57
SS18-215ENST00000580642 H3BTX0 84 aa11.49□□□□□ -0.57
SS18-215ENST00000580642 SNRPCP09234 159 aaKnown RBP11.49□□□□□ -0.57
SS18-215ENST00000580642 C9orf66Q5T8R8 295 aa11.49□□□□□ -0.57
SS18-215ENST00000580642 LURAP1LQ8IV03 231 aa11.49□□□□□ -0.57
SS18-215ENST00000580642 CARHSP1Q9Y2V2 147 aaKnown RBP11.49□□□□□ -0.57
SS18-215ENST00000580642 LY96Q9Y6Y9 160 aa11.49□□□□□ -0.57
SS18-215ENST00000580642 C9JCJ5 164 aa11.48□□□□□ -0.57
SS18-215ENST00000580642 F8W036 122 aa11.48□□□□□ -0.57
SS18-215ENST00000580642 ATP6V1G1O75348 118 aa11.48□□□□□ -0.57
SS18-215ENST00000580642 SAP30O75446 220 aa11.48□□□□□ -0.57
SS18-215ENST00000580642 AKR1C3P42330 323 aa11.48□□□□□ -0.57
SS18-215ENST00000580642 RIPPLY3P57055 190 aa11.48□□□□□ -0.57
SS18-215ENST00000580642 TMEM183BQ1AE95 376 aa11.48□□□□□ -0.57
SS18-215ENST00000580642 CD300EQ496F6 205 aaPredicted RBP11.48□□□□□ -0.57
SS18-215ENST00000580642 TMEM61Q8N0U2 210 aa11.48□□□□□ -0.57
SS18-215ENST00000580642 TMEM75Q8N9X5 138 aa11.48□□□□□ -0.57
SS18-215ENST00000580642 FMC1Q96HJ9 113 aa11.48□□□□□ -0.57
SS18-215ENST00000580642 FAM110AQ9BQ89 295 aa11.48□□□□□ -0.57
SS18-215ENST00000580642 PARLQ9H300 379 aa11.48□□□□□ -0.57
SS18-215ENST00000580642 ZNF727A8MUV8 499 aa11.47□□□□□ -0.57
SS18-215ENST00000580642 WIPF1O43516 503 aa11.47□□□□□ -0.57
SS18-215ENST00000580642 PNRC1Q12796 327 aaPredicted RBP11.47□□□□□ -0.57
SS18-215ENST00000580642 SMIM7Q9BQ49 75 aa11.47□□□□□ -0.57
SS18-215ENST00000580642 NIPSNAP3BQ9BS92 247 aa11.47□□□□□ -0.57
SS18-215ENST00000580642 PPP1R14DQ9NXH3 145 aa11.47□□□□□ -0.57
SS18-215ENST00000580642 M0R3E3 92 aa11.46□□□□□ -0.57
SS18-215ENST00000580642 RPL35P42766 123 aaKnown RBP11.46□□□□□ -0.57
SS18-215ENST00000580642 ZFP30Q9Y2G7 519 aa11.46□□□□□ -0.57
SS18-215ENST00000580642 TRBV7-9A0A0J9YWB2 115 aa11.45□□□□□ -0.58
SS18-215ENST00000580642 CD33P20138 364 aa11.45□□□□□ -0.58
SS18-215ENST00000580642 UBE2G1P62253 170 aa11.45□□□□□ -0.58
SS18-215ENST00000580642 TMEM241Q24JQ0 296 aa11.45□□□□□ -0.58
SS18-215ENST00000580642 C9orf47Q6ZRZ4 202 aa11.45□□□□□ -0.58
SS18-215ENST00000580642 GBGT1Q8N5D6 347 aa11.45□□□□□ -0.58
SS18-215ENST00000580642 ZNF738Q8NE65 137 aa11.45□□□□□ -0.58
SS18-215ENST00000580642 NAT8Q9UHE5 227 aa11.45□□□□□ -0.58
SS18-215ENST00000580642 LENEPQ9Y5L5 61 aa11.45□□□□□ -0.58
SS18-215ENST00000580642 FBN1P35555 2871 aaKnown RBP11.44□□□□□ -0.58
SS18-215ENST00000580642 IGKV3-7A0A075B6H7 116 aa11.44□□□□□ -0.58
SS18-215ENST00000580642 ADCYAP1P18509 176 aa11.44□□□□□ -0.58
SS18-215ENST00000580642 GNG4P50150 75 aa11.44□□□□□ -0.58
SS18-215ENST00000580642 CEBPGP53567 150 aa11.44□□□□□ -0.58
SS18-215ENST00000580642 GNG5P63218 68 aa11.44□□□□□ -0.58
SS18-215ENST00000580642 SAPCD1Q5SSQ6 148 aa11.44□□□□□ -0.58
SS18-215ENST00000580642 GOLT1AQ6ZVE7 132 aa11.44□□□□□ -0.58
SS18-215ENST00000580642 SVBPQ8N300 66 aa11.44□□□□□ -0.58
SS18-215ENST00000580642 OR10J6PQ8NGY7 276 aa11.44□□□□□ -0.58
SS18-215ENST00000580642 LINC00477Q96M19 166 aa11.44□□□□□ -0.58
SS18-215ENST00000580642 LINC00052Q96N35 136 aa11.44□□□□□ -0.58
SS18-215ENST00000580642 BIN3Q9NQY0 253 aa11.44□□□□□ -0.58
SS18-215ENST00000580642 ZNF256Q9Y2P7 627 aaPredicted RBP11.44□□□□□ -0.58
SS18-215ENST00000580642 FLI1Q01543 452 aaPredicted RBP11.43□□□□□ -0.58
SS18-215ENST00000580642 COX8CQ7Z4L0 72 aa11.43□□□□□ -0.58
SS18-215ENST00000580642 WFDC3Q8IUB2 231 aa11.43□□□□□ -0.58
SS18-215ENST00000580642 RNF182Q8N6D2 247 aa11.43□□□□□ -0.58
SS18-215ENST00000580642 TVP23CQ96ET8 276 aa11.43□□□□□ -0.58
SS18-215ENST00000580642 ZMAT5Q9UDW3 170 aaKnown RBP11.43□□□□□ -0.58
SS18-215ENST00000580642 TENM1Q9UKZ4 2725 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 B4DEV8 164 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 LTAP01374 205 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 IGLV2-11P01706 119 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 HLA-DMBP28068 263 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 TFPI2P48307 235 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 ZNF674Q2M3X9 581 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 BEAN1Q3B7T3 259 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 KRTAP21-3Q3LHN1 58 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 IGFL4Q6B9Z1 124 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 FOXI2Q6ZQN5 318 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 BAGE2Q86Y30 109 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 OR8A1Q8NGG7 326 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 C20orf173Q96LM9 149 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 IGF2BP2-AS1Q96M15 143 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 ODF3Q96PU9 254 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 DERL1Q9BUN8 251 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 SDF2L1Q9HCN8 221 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 PSG8Q9UQ74 426 aa11.42□□□□□ -0.58
SS18-215ENST00000580642 WNK1Q9H4A3 2382 aa11.41□□□□□ -0.58
SS18-215ENST00000580642 ZNF705FA8MVS1 300 aaPredicted RBP11.41□□□□□ -0.58
SS18-215ENST00000580642 NPIPB6E9PJ23 425 aa11.41□□□□□ -0.58
SS18-215ENST00000580642 DUSP14O95147 198 aaKnown RBP11.41□□□□□ -0.58
SS18-215ENST00000580642 SNAPINO95295 136 aa11.41□□□□□ -0.58
SS18-215ENST00000580642 ZNF688P0C7X2 276 aa11.41□□□□□ -0.58
SS18-215ENST00000580642 GUCA2BQ16661 112 aa11.41□□□□□ -0.58
SS18-215ENST00000580642 CENPWQ5EE01 88 aa11.41□□□□□ -0.58
SS18-215ENST00000580642 PSMG4Q5JS54 123 aa11.41□□□□□ -0.58
SS18-215ENST00000580642 PRR31Q5SQ13 230 aa11.41□□□□□ -0.58
SS18-215ENST00000580642 TMEM78Q5T7P6 136 aa11.41□□□□□ -0.58
SS18-215ENST00000580642 EBLN2Q6P2I7 272 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms