RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 SLC25A5P05141 298 aaKnown RBP12.07□□□□□ -0.48
SS18-211ENST00000578954 SRP19P09132 144 aaKnown RBP12.07□□□□□ -0.48
SS18-211ENST00000578954 HLA-DMBP28068 263 aa12.07□□□□□ -0.48
SS18-211ENST00000578954 PSG3Q16557 428 aa12.07□□□□□ -0.48
SS18-211ENST00000578954 PRR31Q5SQ13 230 aa12.07□□□□□ -0.48
SS18-211ENST00000578954 IGFL4Q6B9Z1 124 aa12.07□□□□□ -0.48
SS18-211ENST00000578954 FAM24BQ8N5W8 94 aa12.07□□□□□ -0.48
SS18-211ENST00000578954 HIST1H2BAQ96A08 127 aa12.07□□□□□ -0.48
SS18-211ENST00000578954 C20orf173Q96LM9 149 aa12.07□□□□□ -0.48
SS18-211ENST00000578954 GPR61Q9BZJ8 451 aa12.07□□□□□ -0.48
SS18-211ENST00000578954 EPDR1Q9UM22 224 aa12.07□□□□□ -0.48
SS18-211ENST00000578954 TCRAP04437 139 aa12.06□□□□□ -0.48
SS18-211ENST00000578954 TFPI2P48307 235 aa12.06□□□□□ -0.48
SS18-211ENST00000578954 BEAN1Q3B7T3 259 aa12.06□□□□□ -0.48
SS18-211ENST00000578954 WFDC3Q8IUB2 231 aa12.06□□□□□ -0.48
SS18-211ENST00000578954 RNF182Q8N6D2 247 aa12.06□□□□□ -0.48
SS18-211ENST00000578954 CMTM2Q8TAZ6 248 aa12.06□□□□□ -0.48
SS18-211ENST00000578954 C2CD4CQ8TF44 421 aa12.06□□□□□ -0.48
SS18-211ENST00000578954 ATG101Q9BSB4 218 aa12.06□□□□□ -0.48
SS18-211ENST00000578954 SERTM2A0A1B0GWG4 89 aa12.05□□□□□ -0.48
SS18-211ENST00000578954 SCO2A0A1W2PP80 73 aa12.05□□□□□ -0.48
SS18-211ENST00000578954 DIRC3C9JPN6 131 aa12.05□□□□□ -0.48
SS18-211ENST00000578954 PEX7O00628 323 aa12.05□□□□□ -0.48
SS18-211ENST00000578954 IGLL1P15814 213 aa12.05□□□□□ -0.48
SS18-211ENST00000578954 SNRPD3P62318 126 aaKnown RBP12.05□□□□□ -0.48
SS18-211ENST00000578954 FAM110AQ9BQ89 295 aa12.05□□□□□ -0.48
SS18-211ENST00000578954 SLC35B3Q9H1N7 401 aa12.05□□□□□ -0.48
SS18-211ENST00000578954 RBAKDNA6NC62 111 aa12.04□□□□□ -0.48
SS18-211ENST00000578954 ZNF688P0C7X2 276 aa12.04□□□□□ -0.48
SS18-211ENST00000578954 CSN1S1P47710 185 aa12.04□□□□□ -0.48
SS18-211ENST00000578954 GNG5P63218 68 aa12.04□□□□□ -0.48
SS18-211ENST00000578954 SLC7A5P1Q8MH63 180 aa12.04□□□□□ -0.48
SS18-211ENST00000578954 CYB561D1Q8N8Q1 229 aa12.04□□□□□ -0.48
SS18-211ENST00000578954 RPUSD4Q96CM3 377 aaKnown RBP12.04□□□□□ -0.48
SS18-211ENST00000578954 TREM1Q9NP99 234 aa12.04□□□□□ -0.48
SS18-211ENST00000578954 ZNF705FA8MVS1 300 aaPredicted RBP12.03□□□□□ -0.48
SS18-211ENST00000578954 GUCA2BQ16661 112 aa12.03□□□□□ -0.48
SS18-211ENST00000578954 ZNF738Q8NE65 137 aa12.03□□□□□ -0.48
SS18-211ENST00000578954 MAP6D1Q9H9H5 199 aa12.03□□□□□ -0.48
SS18-211ENST00000578954 KLF12Q9Y4X4 402 aa12.03□□□□□ -0.48
SS18-211ENST00000578954 SORL1Q92673 2214 aa12.03□□□□□ -0.48
SS18-211ENST00000578954 TRBV6-1A0A0K0K1D8 114 aa12.02□□□□□ -0.49
SS18-211ENST00000578954 PRAC2D3DTV9 90 aa12.02□□□□□ -0.49
SS18-211ENST00000578954 CMC4P56277 68 aaPredicted RBP12.02□□□□□ -0.49
SS18-211ENST00000578954 ODF3L2Q3SX64 289 aa12.02□□□□□ -0.49
SS18-211ENST00000578954 PSMG4Q5JS54 123 aa12.02□□□□□ -0.49
SS18-211ENST00000578954 GOLT1AQ6ZVE7 132 aa12.02□□□□□ -0.49
SS18-211ENST00000578954 TMEM75Q8N9X5 138 aa12.02□□□□□ -0.49
SS18-211ENST00000578954 LINC00052Q96N35 136 aa12.02□□□□□ -0.49
SS18-211ENST00000578954 TMEM218A2RU14 115 aa12.01□□□□□ -0.49
SS18-211ENST00000578954 FBLL1A6NHQ2 334 aaKnown RBP12.01□□□□□ -0.49
SS18-211ENST00000578954 SFTA3P0C7M3 94 aa12.01□□□□□ -0.49
SS18-211ENST00000578954 AKR1C3P42330 323 aa12.01□□□□□ -0.49
SS18-211ENST00000578954 PARLQ9H300 379 aa12.01□□□□□ -0.49
SS18-211ENST00000578954 C19orf73Q9NVV2 129 aa12.01□□□□□ -0.49
SS18-211ENST00000578954 CMYA5Q8N3K9 4069 aa12.01□□□□□ -0.49
SS18-211ENST00000578954 K7EQM0 130 aa12□□□□□ -0.49
SS18-211ENST00000578954 IGLV2-11P01706 119 aa12□□□□□ -0.49
SS18-211ENST00000578954 S100A9P06702 114 aaKnown RBP12□□□□□ -0.49
SS18-211ENST00000578954 CNN1P51911 297 aaKnown RBP12□□□□□ -0.49
SS18-211ENST00000578954 TAS2R60P59551 318 aa12□□□□□ -0.49
SS18-211ENST00000578954 DEFB131AP59861 70 aa12□□□□□ -0.49
SS18-211ENST00000578954 TMEM183BQ1AE95 376 aa12□□□□□ -0.49
SS18-211ENST00000578954 FOXI2Q6ZQN5 318 aa12□□□□□ -0.49
SS18-211ENST00000578954 C9orf47Q6ZRZ4 202 aa12□□□□□ -0.49
SS18-211ENST00000578954 OR8A1Q8NGG7 326 aa12□□□□□ -0.49
SS18-211ENST00000578954 FMC1Q96HJ9 113 aa12□□□□□ -0.49
SS18-211ENST00000578954 DERL1Q9BUN8 251 aa12□□□□□ -0.49
SS18-211ENST00000578954 PPP1R14DQ9NXH3 145 aa12□□□□□ -0.49
SS18-211ENST00000578954 RPH3ALQ9UNE2 315 aa12□□□□□ -0.49
SS18-211ENST00000578954 IGKV2-40A0A087WW87 121 aaPredicted RBP11.99□□□□□ -0.49
SS18-211ENST00000578954 A8MTW9 85 aa11.99□□□□□ -0.49
SS18-211ENST00000578954 NPIPB6E9PJ23 425 aa11.99□□□□□ -0.49
SS18-211ENST00000578954 IGKV2D-40P01614 121 aaPredicted RBP11.99□□□□□ -0.49
SS18-211ENST00000578954 RPL35P42766 123 aaKnown RBP11.99□□□□□ -0.49
SS18-211ENST00000578954 EGFEM1PQ0D2K5 195 aa11.99□□□□□ -0.49
SS18-211ENST00000578954 FAM74A3Q4VXF1 159 aa11.99□□□□□ -0.49
SS18-211ENST00000578954 CITED4Q96RK1 184 aa11.99□□□□□ -0.49
SS18-211ENST00000578954 SAV1Q9H4B6 383 aaPredicted RBP11.99□□□□□ -0.49
SS18-211ENST00000578954 A0A0J9YX75 114 aa11.98□□□□□ -0.49
SS18-211ENST00000578954 C9JCJ5 164 aa11.98□□□□□ -0.49
SS18-211ENST00000578954 ADCYAP1P18509 176 aa11.98□□□□□ -0.49
SS18-211ENST00000578954 DEFB1P60022 68 aa11.98□□□□□ -0.49
SS18-211ENST00000578954 SOHLH1Q5JUK2 328 aa11.98□□□□□ -0.49
SS18-211ENST00000578954 C10orf91Q5T1B1 145 aa11.98□□□□□ -0.49
SS18-211ENST00000578954 SAMD5Q5TGI4 173 aa11.98□□□□□ -0.49
SS18-211ENST00000578954 IGF2BP2-AS1Q96M15 143 aa11.98□□□□□ -0.49
SS18-211ENST00000578954 LINC00479Q96M42 142 aa11.98□□□□□ -0.49
SS18-211ENST00000578954 VGLL1Q99990 258 aa11.98□□□□□ -0.49
SS18-211ENST00000578954 SEC11CQ9BY50 192 aa11.98□□□□□ -0.49
SS18-211ENST00000578954 TRBV20OR9-2A0A075B6H5 130 aa11.97□□□□□ -0.49
SS18-211ENST00000578954 TRAV8-1A0A0A6YYK1 113 aa11.97□□□□□ -0.49
SS18-211ENST00000578954 TRAV34A0A0B4J273 112 aa11.97□□□□□ -0.49
SS18-211ENST00000578954 OR11H12B2RN74 326 aa11.97□□□□□ -0.49
SS18-211ENST00000578954 F6UB75 175 aa11.97□□□□□ -0.49
SS18-211ENST00000578954 CD7P09564 240 aa11.97□□□□□ -0.49
SS18-211ENST00000578954 HLA-DRB4P13762 266 aa11.97□□□□□ -0.49
SS18-211ENST00000578954 UBE2G1P62253 170 aa11.97□□□□□ -0.49
SS18-211ENST00000578954 FLI1Q01543 452 aaPredicted RBP11.97□□□□□ -0.49
SS18-211ENST00000578954 OXLD1Q5BKU9 147 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 245.9 ms