RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 DUSP14O95147 198 aaKnown RBP15.17■□□□□ 0.02
VPS53-210ENST00000571456 CXorf1O96002 111 aa15.17■□□□□ 0.02
VPS53-210ENST00000571456 RAB5CP51148 216 aa15.17■□□□□ 0.02
VPS53-210ENST00000571456 CD300CQ08708 224 aa15.17■□□□□ 0.02
VPS53-210ENST00000571456 HAGHQ16775 308 aa15.17■□□□□ 0.02
VPS53-210ENST00000571456 ACTL10Q5JWF8 245 aa15.17■□□□□ 0.02
VPS53-210ENST00000571456 TRPT1Q86TN4 253 aaKnown RBP15.17■□□□□ 0.02
VPS53-210ENST00000571456 H3BMM0 161 aa15.16■□□□□ 0.02
VPS53-210ENST00000571456 ZNF738Q8NE65 137 aa15.16■□□□□ 0.02
VPS53-210ENST00000571456 CSTL1Q9H114 145 aa15.16■□□□□ 0.02
VPS53-210ENST00000571456 ZMAT4Q9H898 229 aa15.16■□□□□ 0.02
VPS53-210ENST00000571456 TMEM167BQ9NRX6 74 aa15.16■□□□□ 0.02
VPS53-210ENST00000571456 AGRNO00468 2067 aa15.16■□□□□ 0.02
VPS53-210ENST00000571456 A0A0J9YX75 114 aa15.15■□□□□ 0.02
VPS53-210ENST00000571456 Q6ZWC4 215 aa15.15■□□□□ 0.02
VPS53-210ENST00000571456 ZNF503Q96F45 646 aa15.15■□□□□ 0.02
VPS53-210ENST00000571456 SPATA25Q9BR10 227 aa15.15■□□□□ 0.02
VPS53-210ENST00000571456 SLC17A3O00476 420 aa15.14■□□□□ 0.01
VPS53-210ENST00000571456 OR10J4P0C629 311 aa15.14■□□□□ 0.01
VPS53-210ENST00000571456 ZNF124Q15973 351 aa15.14■□□□□ 0.01
VPS53-210ENST00000571456 FAM74A1Q5RGS3 127 aa15.14■□□□□ 0.01
VPS53-210ENST00000571456 SBSPONQ8IVN8 264 aa15.14■□□□□ 0.01
VPS53-210ENST00000571456 ARL6IP6Q8N6S5 226 aa15.14■□□□□ 0.01
VPS53-210ENST00000571456 BLNKQ8WV28 456 aa15.14■□□□□ 0.01
VPS53-210ENST00000571456 C20orf173Q96LM9 149 aa15.14■□□□□ 0.01
VPS53-210ENST00000571456 TM2D3Q9BRN9 247 aa15.14■□□□□ 0.01
VPS53-210ENST00000571456 C1QTNF4Q9BXJ3 329 aa15.14■□□□□ 0.01
VPS53-210ENST00000571456 KNCNA6PVL3 124 aa15.13■□□□□ 0.01
VPS53-210ENST00000571456 NDUFB4O95168 129 aa15.13■□□□□ 0.01
VPS53-210ENST00000571456 ARL14EPLP0DKL9 152 aa15.13■□□□□ 0.01
VPS53-210ENST00000571456 RNF182Q8N6D2 247 aa15.13■□□□□ 0.01
VPS53-210ENST00000571456 SUN5Q8TC36 379 aa15.13■□□□□ 0.01
VPS53-210ENST00000571456 RPUSD4Q96CM3 377 aaKnown RBP15.13■□□□□ 0.01
VPS53-210ENST00000571456 PHYHIPLQ96FC7 376 aa15.13■□□□□ 0.01
VPS53-210ENST00000571456 TP53TG1Q9Y2A0 90 aa15.13■□□□□ 0.01
VPS53-210ENST00000571456 A8MTW9 85 aa15.12■□□□□ 0.01
VPS53-210ENST00000571456 RPL35AP18077 110 aaKnown RBP15.12■□□□□ 0.01
VPS53-210ENST00000571456 OR8A1Q8NGG7 326 aa15.12■□□□□ 0.01
VPS53-210ENST00000571456 RXFP4Q8TDU9 374 aa15.12■□□□□ 0.01
VPS53-210ENST00000571456 TMED6Q8WW62 240 aa15.12■□□□□ 0.01
VPS53-210ENST00000571456 H3BTX0 84 aa15.11■□□□□ 0.01
VPS53-210ENST00000571456 AMBPP02760 352 aa15.11■□□□□ 0.01
VPS53-210ENST00000571456 GCHFRP30047 84 aa15.11■□□□□ 0.01
VPS53-210ENST00000571456 IGFL4Q6B9Z1 124 aa15.11■□□□□ 0.01
VPS53-210ENST00000571456 OR10J6PQ8NGY7 276 aa15.11■□□□□ 0.01
VPS53-210ENST00000571456 SNRPCP09234 159 aaKnown RBP15.1■□□□□ 0.01
VPS53-210ENST00000571456 CSN1S1P47710 185 aa15.1■□□□□ 0.01
VPS53-210ENST00000571456 NKX6-2Q9C056 277 aaPredicted RBP15.1■□□□□ 0.01
VPS53-210ENST00000571456 OTORQ9NRC9 128 aa15.1■□□□□ 0.01
VPS53-210ENST00000571456 FRAS1Q86XX4 4008 aa15.09■□□□□ 0.01
VPS53-210ENST00000571456 MAP1LC3B2A6NCE7 125 aa15.09■□□□□ 0.01
VPS53-210ENST00000571456 RANP62826 216 aaKnown RBP15.09■□□□□ 0.01
VPS53-210ENST00000571456 ICAM4Q14773 271 aa15.09■□□□□ 0.01
VPS53-210ENST00000571456 ZNF726P1Q15940 193 aa15.09■□□□□ 0.01
VPS53-210ENST00000571456 GDF5OSQ5U4N7 250 aa15.09■□□□□ 0.01
VPS53-210ENST00000571456 OR4B1Q8NGF8 309 aa15.09■□□□□ 0.01
VPS53-210ENST00000571456 MBD3L1Q8WWY6 194 aa15.09■□□□□ 0.01
VPS53-210ENST00000571456 MAP1LC3BQ9GZQ8 125 aa15.09■□□□□ 0.01
VPS53-210ENST00000571456 Q9H3A6 140 aa15.09■□□□□ 0.01
VPS53-210ENST00000571456 TEX46H3BTG2 121 aa15.08■□□□□ 0
VPS53-210ENST00000571456 HMGB3O15347 200 aaKnown RBP15.08■□□□□ 0
VPS53-210ENST00000571456 CA1P00915 261 aaPredicted RBP15.08■□□□□ 0
VPS53-210ENST00000571456 HLA-DMBP28068 263 aa15.08■□□□□ 0
VPS53-210ENST00000571456 SULT1A2P50226 295 aa15.08■□□□□ 0
VPS53-210ENST00000571456 CNN1P51911 297 aaKnown RBP15.08■□□□□ 0
VPS53-210ENST00000571456 ARL2-SNX15V9GYD0 113 aa15.08■□□□□ 0
VPS53-210ENST00000571456 PLECQ15149 4684 aaKnown RBP15.08■□□□□ 0
VPS53-210ENST00000571456 A0A1W2PRE2 83 aa15.07■□□□□ 0
VPS53-210ENST00000571456 RBAKDNA6NC62 111 aa15.07■□□□□ 0
VPS53-210ENST00000571456 F6UB75 175 aa15.07■□□□□ 0
VPS53-210ENST00000571456 SLC25A5P05141 298 aaKnown RBP15.07■□□□□ 0
VPS53-210ENST00000571456 PPT1P50897 306 aa15.07■□□□□ 0
VPS53-210ENST00000571456 HIST1H1AQ02539 215 aaPredicted RBP15.07■□□□□ 0
VPS53-210ENST00000571456 EXOC3-AS1Q8N2X6 119 aa15.07■□□□□ 0
VPS53-210ENST00000571456 CMTM2Q8TAZ6 248 aa15.07■□□□□ 0
VPS53-210ENST00000571456 FAM213BQ8TBF2 198 aa15.07■□□□□ 0
VPS53-210ENST00000571456 ODF3Q96PU9 254 aa15.07■□□□□ 0
VPS53-210ENST00000571456 SERTM2A0A1B0GWG4 89 aa15.06■□□□□ 0
VPS53-210ENST00000571456 H2AFB1P0C5Y9 115 aa15.06■□□□□ 0
VPS53-210ENST00000571456 SSX7Q7RTT5 188 aa15.06■□□□□ 0
VPS53-210ENST00000571456 RNF183Q96D59 192 aa15.06■□□□□ 0
VPS53-210ENST00000571456 LINC00477Q96M19 166 aa15.06■□□□□ 0
VPS53-210ENST00000571456 PPP1R14DQ9NXH3 145 aa15.06■□□□□ 0
VPS53-210ENST00000571456 NPIPB6E9PJ23 425 aa15.05■□□□□ -0
VPS53-210ENST00000571456 M0R3E3 92 aa15.05■□□□□ -0
VPS53-210ENST00000571456 SPRY2O43597 315 aa15.05■□□□□ -0
VPS53-210ENST00000571456 TSPOP30536 169 aa15.05■□□□□ -0
VPS53-210ENST00000571456 IQCF2Q8IXL9 164 aa15.05■□□□□ -0
VPS53-210ENST00000571456 SFT2D1Q8WV19 159 aa15.05■□□□□ -0
VPS53-210ENST00000571456 TRAV1-1A0A0B4J248 108 aa15.04■□□□□ -0
VPS53-210ENST00000571456 TRBV7-9A0A0J9YWB2 115 aa15.04■□□□□ -0
VPS53-210ENST00000571456 ZNF705FA8MVS1 300 aaPredicted RBP15.04■□□□□ -0
VPS53-210ENST00000571456 HBE1P02100 147 aa15.04■□□□□ -0
VPS53-210ENST00000571456 NKX2-5P52952 324 aaPredicted RBP15.04■□□□□ -0
VPS53-210ENST00000571456 AMTNQ6UX39 209 aa15.04■□□□□ -0
VPS53-210ENST00000571456 C9orf47Q6ZRZ4 202 aa15.04■□□□□ -0
VPS53-210ENST00000571456 C5orf17Q8NAS9 161 aa15.04■□□□□ -0
VPS53-210ENST00000571456 TCEAL7Q9BRU2 100 aa15.04■□□□□ -0
VPS53-210ENST00000571456 PLA2G2EQ9NZK7 142 aa15.04■□□□□ -0
VPS53-210ENST00000571456 PGPA6NDG6 321 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms