RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 MORN3Q6PF18 240 aaPredicted RBP14.25□□□□□ -0.13
CLN3-225ENST00000566824 CSNK1G2-AS1Q8NCQ2 148 aa14.25□□□□□ -0.13
CLN3-225ENST00000566824 OR8A1Q8NGG7 326 aa14.25□□□□□ -0.13
CLN3-225ENST00000566824 RAB24Q969Q5 203 aa14.25□□□□□ -0.13
CLN3-225ENST00000566824 XCL2Q9UBD3 114 aa14.25□□□□□ -0.13
CLN3-225ENST00000566824 CDC34P49427 236 aaPredicted RBP14.24□□□□□ -0.13
CLN3-225ENST00000566824 UBE2L3P68036 154 aaKnown RBP14.24□□□□□ -0.13
CLN3-225ENST00000566824 HIST1H1AQ02539 215 aaPredicted RBP14.24□□□□□ -0.13
CLN3-225ENST00000566824 ZNF471Q9BX82 626 aaPredicted RBP14.24□□□□□ -0.13
CLN3-225ENST00000566824 DNAH7Q8WXX0 4024 aa14.24□□□□□ -0.13
CLN3-225ENST00000566824 KANTRA0A1W2PQU2 76 aa14.23□□□□□ -0.13
CLN3-225ENST00000566824 CLUHP3Q96NS8 147 aa14.23□□□□□ -0.13
CLN3-225ENST00000566824 TP53TG1Q9Y2A0 90 aa14.23□□□□□ -0.13
CLN3-225ENST00000566824 MBP02144 154 aa14.22□□□□□ -0.13
CLN3-225ENST00000566824 STAG3L2P0CL84 134 aa14.22□□□□□ -0.13
CLN3-225ENST00000566824 STAG3L3P0CL85 134 aa14.22□□□□□ -0.13
CLN3-225ENST00000566824 ARL14EPLP0DKL9 152 aa14.22□□□□□ -0.13
CLN3-225ENST00000566824 TAS2R45P59539 299 aa14.22□□□□□ -0.13
CLN3-225ENST00000566824 PSG9Q00887 426 aa14.22□□□□□ -0.13
CLN3-225ENST00000566824 PDE6HQ13956 83 aa14.22□□□□□ -0.13
CLN3-225ENST00000566824 ICAM4Q14773 271 aa14.22□□□□□ -0.13
CLN3-225ENST00000566824 EDA2RQ9HAV5 297 aa14.22□□□□□ -0.13
CLN3-225ENST00000566824 PFDN1O60925 122 aa14.21□□□□□ -0.13
CLN3-225ENST00000566824 RANP62826 216 aaKnown RBP14.21□□□□□ -0.13
CLN3-225ENST00000566824 ACTR3CQ9C0K3 210 aaPredicted RBP14.21□□□□□ -0.13
CLN3-225ENST00000566824 M0R2Z0 102 aa14.2□□□□□ -0.14
CLN3-225ENST00000566824 DUSP14O95147 198 aaKnown RBP14.2□□□□□ -0.14
CLN3-225ENST00000566824 FHITP49789 147 aa14.2□□□□□ -0.14
CLN3-225ENST00000566824 C9orf62Q8N4C0 152 aa14.2□□□□□ -0.14
CLN3-225ENST00000566824 ERCC8Q13216 396 aa14.19□□□□□ -0.14
CLN3-225ENST00000566824 SPINK13Q1W4C9 94 aa14.19□□□□□ -0.14
CLN3-225ENST00000566824 AKR1C8PQ5T2L2 129 aa14.19□□□□□ -0.14
CLN3-225ENST00000566824 PQLC2Q6ZP29 291 aa14.19□□□□□ -0.14
CLN3-225ENST00000566824 OR11H2Q8NH07 326 aa14.19□□□□□ -0.14
CLN3-225ENST00000566824 HYLS1Q96M11 299 aa14.19□□□□□ -0.14
CLN3-225ENST00000566824 RARRES2Q99969 163 aa14.19□□□□□ -0.14
CLN3-225ENST00000566824 Q9H3A6 140 aa14.19□□□□□ -0.14
CLN3-225ENST00000566824 CRXO43186 299 aaPredicted RBP14.18□□□□□ -0.14
CLN3-225ENST00000566824 GCHFRP30047 84 aa14.18□□□□□ -0.14
CLN3-225ENST00000566824 NKX2-5P52952 324 aaPredicted RBP14.18□□□□□ -0.14
CLN3-225ENST00000566824 NUTF2P61970 127 aaKnown RBP14.18□□□□□ -0.14
CLN3-225ENST00000566824 MRPL53Q96EL3 112 aaKnown RBP14.18□□□□□ -0.14
CLN3-225ENST00000566824 WWC2-AS2Q96NR7 200 aa14.18□□□□□ -0.14
CLN3-225ENST00000566824 TMPRSS5Q9H3S3 457 aa14.18□□□□□ -0.14
CLN3-225ENST00000566824 X6R8D5 127 aa14.18□□□□□ -0.14
CLN3-225ENST00000566824 IGKV2-40A0A087WW87 121 aaPredicted RBP14.17□□□□□ -0.14
CLN3-225ENST00000566824 NPIPB6E9PJ23 425 aa14.17□□□□□ -0.14
CLN3-225ENST00000566824 IGKV2D-40P01614 121 aaPredicted RBP14.17□□□□□ -0.14
CLN3-225ENST00000566824 SEC11BP0C7V7 166 aa14.17□□□□□ -0.14
CLN3-225ENST00000566824 CT45A10P0DMU9 189 aa14.17□□□□□ -0.14
CLN3-225ENST00000566824 FGF8P55075 233 aaPredicted RBP14.17□□□□□ -0.14
CLN3-225ENST00000566824 KIR3DS1Q14943 382 aa14.17□□□□□ -0.14
CLN3-225ENST00000566824 ZFP69Q49AA0 526 aa14.17□□□□□ -0.14
CLN3-225ENST00000566824 BAP18Q8IXM2 172 aa14.17□□□□□ -0.14
CLN3-225ENST00000566824 SUN5Q8TC36 379 aa14.17□□□□□ -0.14
CLN3-225ENST00000566824 TMED6Q8WW62 240 aa14.17□□□□□ -0.14
CLN3-225ENST00000566824 AAMDCQ9H7C9 122 aa14.17□□□□□ -0.14
CLN3-225ENST00000566824 PRELID1Q9Y255 219 aa14.17□□□□□ -0.14
CLN3-225ENST00000566824 TRAV12-2A0A075B6T6 113 aa14.16□□□□□ -0.14
CLN3-225ENST00000566824 A0A0J9YWU9 116 aa14.16□□□□□ -0.14
CLN3-225ENST00000566824 CTXND1A0A1B0GTU2 59 aa14.16□□□□□ -0.14
CLN3-225ENST00000566824 DEFB4AO15263 64 aa14.16□□□□□ -0.14
CLN3-225ENST00000566824 C1orf158Q8N1D5 194 aa14.16□□□□□ -0.14
CLN3-225ENST00000566824 OR10J6PQ8NGY7 276 aa14.16□□□□□ -0.14
CLN3-225ENST00000566824 STOML3Q8TAV4 291 aa14.16□□□□□ -0.14
CLN3-225ENST00000566824 VGLL1Q99990 258 aa14.16□□□□□ -0.14
CLN3-225ENST00000566824 ZNF705EA8MWA4 302 aaPredicted RBP14.15□□□□□ -0.14
CLN3-225ENST00000566824 BOLA2-SMG1P6H3BVE0 249 aa14.15□□□□□ -0.14
CLN3-225ENST00000566824 RBMY1A1P0DJD3 496 aaKnown RBP14.15□□□□□ -0.14
CLN3-225ENST00000566824 RBMY1CP0DJD4 496 aa14.15□□□□□ -0.14
CLN3-225ENST00000566824 RBMY1FQ15415 496 aaKnown RBP14.15□□□□□ -0.14
CLN3-225ENST00000566824 C1QTNF4Q9BXJ3 329 aa14.15□□□□□ -0.14
CLN3-225ENST00000566824 AGPAT4-IT1Q9H0P7 198 aa14.15□□□□□ -0.14
CLN3-225ENST00000566824 PGPA6NDG6 321 aa14.15□□□□□ -0.15
CLN3-225ENST00000566824 CXorf1O96002 111 aa14.15□□□□□ -0.15
CLN3-225ENST00000566824 TPT1P13693 172 aaKnown RBP14.15□□□□□ -0.15
CLN3-225ENST00000566824 ZNF705AQ6ZN79 300 aaPredicted RBP14.15□□□□□ -0.15
CLN3-225ENST00000566824 LYPD1Q8N2G4 141 aa14.15□□□□□ -0.15
CLN3-225ENST00000566824 IGHV3OR16-12A0A075B7B8 117 aa14.14□□□□□ -0.15
CLN3-225ENST00000566824 PRM2P04554 102 aa14.14□□□□□ -0.15
CLN3-225ENST00000566824 IQCF2Q8IXL9 164 aa14.14□□□□□ -0.15
CLN3-225ENST00000566824 Q8NAQ8 132 aa14.14□□□□□ -0.15
CLN3-225ENST00000566824 IGF2BP2-AS1Q96M15 143 aa14.14□□□□□ -0.15
CLN3-225ENST00000566824 OTORQ9NRC9 128 aa14.14□□□□□ -0.15
CLN3-225ENST00000566824 IGHV4-28A0A0C4DH34 117 aa14.13□□□□□ -0.15
CLN3-225ENST00000566824 MAP1LC3B2A6NCE7 125 aa14.13□□□□□ -0.15
CLN3-225ENST00000566824 GNG5P63218 68 aa14.13□□□□□ -0.15
CLN3-225ENST00000566824 FAM213BQ8TBF2 198 aa14.13□□□□□ -0.15
CLN3-225ENST00000566824 MAP1LC3BQ9GZQ8 125 aa14.13□□□□□ -0.15
CLN3-225ENST00000566824 PPP1R14DQ9NXH3 145 aa14.13□□□□□ -0.15
CLN3-225ENST00000566824 BOLA1Q9Y3E2 137 aa14.13□□□□□ -0.15
CLN3-225ENST00000566824 DIRC3C9JPN6 131 aa14.12□□□□□ -0.15
CLN3-225ENST00000566824 J3KRW8 73 aa14.12□□□□□ -0.15
CLN3-225ENST00000566824 EIF5AP63241 154 aaKnown RBP14.12□□□□□ -0.15
CLN3-225ENST00000566824 FAM19A4Q96LR4 140 aa14.12□□□□□ -0.15
CLN3-225ENST00000566824 RPH3ALQ9UNE2 315 aa14.12□□□□□ -0.15
CLN3-225ENST00000566824 YTHDF2Q9Y5A9 579 aaKnown RBP14.12□□□□□ -0.15
CLN3-225ENST00000566824 CSMD3Q7Z407 3707 aa14.11□□□□□ -0.15
CLN3-225ENST00000566824 GGTLC3B5MD39 225 aa14.11□□□□□ -0.15
CLN3-225ENST00000566824 C9orf47Q6ZRZ4 202 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms