RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 ZMAT4Q9H898 229 aa7.45□□□□□ -1.22
USP3-216ENST00000559873 RBMY1BA6NDE4 496 aaKnown RBP7.44□□□□□ -1.22
USP3-216ENST00000559873 RBMY1EA6NEQ0 496 aaKnown RBP7.44□□□□□ -1.22
USP3-216ENST00000559873 H3BMM0 161 aa7.44□□□□□ -1.22
USP3-216ENST00000559873 EIF3GO75821 320 aaKnown RBP eCLIP7.44□□□□□ -1.22
USP3-216ENST00000559873 NDUFB4O95168 129 aa7.44□□□□□ -1.22
USP3-216ENST00000559873 HBE1P02100 147 aa7.44□□□□□ -1.22
USP3-216ENST00000559873 H2AFB1P0C5Y9 115 aa7.44□□□□□ -1.22
USP3-216ENST00000559873 RBMY1DP0C7P1 496 aaKnown RBP7.44□□□□□ -1.22
USP3-216ENST00000559873 NHLRC4P0CG21 123 aaPredicted RBP7.44□□□□□ -1.22
USP3-216ENST00000559873 PPT1P50897 306 aa7.44□□□□□ -1.22
USP3-216ENST00000559873 RANP62826 216 aaKnown RBP7.44□□□□□ -1.22
USP3-216ENST00000559873 ICAM4Q14773 271 aa7.44□□□□□ -1.22
USP3-216ENST00000559873 LINC00322Q6ZN03 302 aaPredicted RBP7.44□□□□□ -1.22
USP3-216ENST00000559873 OR8A1Q8NGG7 326 aa7.44□□□□□ -1.22
USP3-216ENST00000559873 RXFP4Q8TDU9 374 aa7.44□□□□□ -1.22
USP3-216ENST00000559873 C20orf173Q96LM9 149 aa7.44□□□□□ -1.22
USP3-216ENST00000559873 CLUHP3Q96NS8 147 aa7.44□□□□□ -1.22
USP3-216ENST00000559873 CSTL1Q9H114 145 aa7.44□□□□□ -1.22
USP3-216ENST00000559873 Q9H3A6 140 aa7.44□□□□□ -1.22
USP3-216ENST00000559873 OTORQ9NRC9 128 aa7.44□□□□□ -1.22
USP3-216ENST00000559873 PPP1R14DQ9NXH3 145 aa7.44□□□□□ -1.22
USP3-216ENST00000559873 CA1P00915 261 aaPredicted RBP7.43□□□□□ -1.22
USP3-216ENST00000559873 SULT1A2P50226 295 aa7.43□□□□□ -1.22
USP3-216ENST00000559873 CNN1P51911 297 aaKnown RBP7.43□□□□□ -1.22
USP3-216ENST00000559873 ZNF726P1Q15940 193 aa7.43□□□□□ -1.22
USP3-216ENST00000559873 HAGHQ16775 308 aa7.43□□□□□ -1.22
USP3-216ENST00000559873 Q6ZWC4 215 aa7.43□□□□□ -1.22
USP3-216ENST00000559873 SSX7Q7RTT5 188 aa7.43□□□□□ -1.22
USP3-216ENST00000559873 EXOC3-AS1Q8N2X6 119 aa7.43□□□□□ -1.22
USP3-216ENST00000559873 SFT2D1Q8WV19 159 aa7.43□□□□□ -1.22
USP3-216ENST00000559873 NKX6-2Q9C056 277 aaPredicted RBP7.43□□□□□ -1.22
USP3-216ENST00000559873 ARL2-SNX15V9GYD0 113 aa7.43□□□□□ -1.22
USP3-216ENST00000559873 SERTM2A0A1B0GWG4 89 aa7.42□□□□□ -1.22
USP3-216ENST00000559873 A0A1W2PRE2 83 aa7.42□□□□□ -1.22
USP3-216ENST00000559873 F6UB75 175 aa7.42□□□□□ -1.22
USP3-216ENST00000559873 BOLA2-SMG1P6H3BVE0 249 aa7.42□□□□□ -1.22
USP3-216ENST00000559873 K7EQM0 130 aa7.42□□□□□ -1.22
USP3-216ENST00000559873 M0R3E3 92 aa7.42□□□□□ -1.22
USP3-216ENST00000559873 AMBPP02760 352 aa7.42□□□□□ -1.22
USP3-216ENST00000559873 HLA-DMBP28068 263 aa7.42□□□□□ -1.22
USP3-216ENST00000559873 FHITP49789 147 aa7.42□□□□□ -1.22
USP3-216ENST00000559873 FGF8P55075 233 aaPredicted RBP7.42□□□□□ -1.22
USP3-216ENST00000559873 ARL6IP6Q8N6S5 226 aa7.42□□□□□ -1.22
USP3-216ENST00000559873 SUN5Q8TC36 379 aa7.42□□□□□ -1.22
USP3-216ENST00000559873 MBD3L1Q8WWY6 194 aa7.42□□□□□ -1.22
USP3-216ENST00000559873 ASCL2Q99929 193 aa7.42□□□□□ -1.22
USP3-216ENST00000559873 TP53TG1Q9Y2A0 90 aa7.42□□□□□ -1.22
USP3-216ENST00000559873 RBAKDNA6NC62 111 aa7.41□□□□□ -1.22
USP3-216ENST00000559873 ZNF705FA8MVS1 300 aaPredicted RBP7.41□□□□□ -1.22
USP3-216ENST00000559873 ZNF705EA8MWA4 302 aaPredicted RBP7.41□□□□□ -1.22
USP3-216ENST00000559873 IGKV3-20P01619 116 aa7.41□□□□□ -1.22
USP3-216ENST00000559873 SLC25A5P05141 298 aaKnown RBP7.41□□□□□ -1.22
USP3-216ENST00000559873 TSPOP30536 169 aa7.41□□□□□ -1.22
USP3-216ENST00000559873 TMEM78Q5T7P6 136 aa7.41□□□□□ -1.22
USP3-216ENST00000559873 GDF5OSQ5U4N7 250 aa7.41□□□□□ -1.22
USP3-216ENST00000559873 SBSPONQ8IVN8 264 aa7.41□□□□□ -1.22
USP3-216ENST00000559873 C5orf17Q8NAS9 161 aa7.41□□□□□ -1.22
USP3-216ENST00000559873 RCHY1Q96PM5 261 aa7.41□□□□□ -1.22
USP3-216ENST00000559873 TM2D3Q9BRN9 247 aa7.41□□□□□ -1.22
USP3-216ENST00000559873 TCEAL7Q9BRU2 100 aa7.41□□□□□ -1.22
USP3-216ENST00000559873 TRAV1-1A0A0B4J248 108 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 PGPA6NDG6 321 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 FBLL1A6NHQ2 334 aaKnown RBP7.4□□□□□ -1.22
USP3-216ENST00000559873 NPIPB6E9PJ23 425 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 INSP01308 110 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 IFNA1P01562 189 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 LEPP41159 167 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 DEFB1P60022 68 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 BLOC1S1P78537 153 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 DEFB135Q30KP9 77 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 ALKAL2Q6UX46 152 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 LINC00477Q96M19 166 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 ODF3Q96PU9 254 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 MANBALQ9NQG1 85 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 PLA2G2EQ9NZK7 142 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 RPH3ALQ9UNE2 315 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 BOLA1Q9Y3E2 137 aa7.4□□□□□ -1.22
USP3-216ENST00000559873 A0A1B0GV50 99 aa7.39□□□□□ -1.23
USP3-216ENST00000559873 A8MTW9 85 aa7.39□□□□□ -1.23
USP3-216ENST00000559873 DIRC3C9JPN6 131 aa7.39□□□□□ -1.23
USP3-216ENST00000559873 PRAC2D3DTV9 90 aa7.39□□□□□ -1.23
USP3-216ENST00000559873 F6UZH7 168 aa7.39□□□□□ -1.23
USP3-216ENST00000559873 SPRY2O43597 315 aa7.39□□□□□ -1.23
USP3-216ENST00000559873 IFNA7P01567 189 aa7.39□□□□□ -1.23
USP3-216ENST00000559873 UBE2G2P60604 165 aa7.39□□□□□ -1.23
USP3-216ENST00000559873 RNF183Q96D59 192 aa7.39□□□□□ -1.23
USP3-216ENST00000559873 TMPRSS5Q9H3S3 457 aa7.39□□□□□ -1.23
USP3-216ENST00000559873 GOLT1BQ9Y3E0 138 aa7.39□□□□□ -1.23
USP3-216ENST00000559873 IGKV2-40A0A087WW87 121 aaPredicted RBP7.38□□□□□ -1.23
USP3-216ENST00000559873 TRBV7-9A0A0J9YWB2 115 aa7.38□□□□□ -1.23
USP3-216ENST00000559873 FAM74A7A6NL05 159 aa7.38□□□□□ -1.23
USP3-216ENST00000559873 GGTLC3B5MD39 225 aa7.38□□□□□ -1.23
USP3-216ENST00000559873 IGKV2D-40P01614 121 aaPredicted RBP7.38□□□□□ -1.23
USP3-216ENST00000559873 ZNF705DP0CH99 300 aaPredicted RBP7.38□□□□□ -1.23
USP3-216ENST00000559873 ZNF705BP0CI00 300 aaPredicted RBP7.38□□□□□ -1.23
USP3-216ENST00000559873 TAGLN2P37802 199 aaKnown RBP7.38□□□□□ -1.23
USP3-216ENST00000559873 CDKN1BP46527 198 aa7.38□□□□□ -1.23
USP3-216ENST00000559873 SUMO1P63165 101 aaKnown RBP7.38□□□□□ -1.23
USP3-216ENST00000559873 SPINK13Q1W4C9 94 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms