RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 H7C1C5 153 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 RER1O15258 196 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 SYNGR1O43759 233 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 SYNGR2O43760 224 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 SLC16A7O60669 478 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 MPDU1O75352 247 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 HSBP1O75506 76 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 CXorf1O96002 111 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 NAPSAO96009 420 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 PPYP01298 95 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 IGKV1D-33P01593 117 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 IGKV1-33P01594 117 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 IGHV3-7P01780 117 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 CHTF8P0CG12 524 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 SMIM13P0DJ93 91 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 FGF6P10767 208 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 SRIP30626 198 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 KIR2DS4P43632 304 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 ZNF121P58317 390 aaPredicted RBP1.9□□□□□ -2.11
VPS13C-208ENST00000559119 MLF1P58340 268 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 RPS15AP62244 130 aaKnown RBP1.9□□□□□ -2.11
VPS13C-208ENST00000559119 CACNG7P62955 275 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 MEF2CQ06413 473 aaPredicted RBP1.9□□□□□ -2.11
VPS13C-208ENST00000559119 KISS1Q15726 138 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 TNXAQ16473 311 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 TMEM52BQ4KMG9 183 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 Q56UQ5 140 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 GCSAMLQ5JQS6 135 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 LINC01545Q5VT33 79 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 LCN12Q6JVE5 192 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 C22orf39Q6P5X5 142 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 SHISA6Q6ZSJ9 500 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 FAM231DQ6ZW35 169 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 ATP5L2Q7Z4Y8 100 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 MARCH3Q86UD3 253 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 PCP2Q8IVA1 136 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 TMEM251Q8N6I4 163 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 LINC00304Q8N9R0 145 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 NPBQ8NG41 125 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 OR9G1Q8NH87 305 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 CT55Q8WUE5 264 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 NRGNQ92686 78 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 PTH2Q96A98 100 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 COX14Q96I36 57 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 ADTRPQ96IZ2 230 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 PGLYRP4Q96LB8 373 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 OR4C12Q96R67 309 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 NDFIP1Q9BT67 221 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 TMEM147Q9BVK8 224 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 HINT2Q9BX68 163 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 HIGD1BQ9P298 99 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 SS18L2Q9UHA2 77 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 NXT1Q9UKK6 140 aaKnown RBP1.9□□□□□ -2.11
VPS13C-208ENST00000559119 UFC1Q9Y3C8 167 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 SOX21Q9Y651 276 aaPredicted RBP1.9□□□□□ -2.11
VPS13C-208ENST00000559119 DOCK9Q9BZ29 2069 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 PLXNA2O75051 1894 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 TRBV20OR9-2A0A075B6H5 130 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 A0A087WX48 190 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 A0A0G2JRQ6 117 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 A0A1W2PQD3 144 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 C15orf65H3BRN8 121 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 H3BSH0 61 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 K7EN84 100 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 M0QXV9 152 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 SS18L1O75177 396 aaPredicted RBP1.89□□□□□ -2.11
VPS13C-208ENST00000559119 PGLYRP1O75594 196 aaPredicted RBP1.89□□□□□ -2.11
VPS13C-208ENST00000559119 KLF7O75840 302 aaPredicted RBP1.89□□□□□ -2.11
VPS13C-208ENST00000559119 LEPROTL1O95214 131 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 CRYGBP07316 175 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 SPINK8P0C7L1 97 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 HLA-DRB4P13762 266 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 CTLA4P16410 223 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 EVI2AP22794 236 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 OPRK1P41145 380 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 RPS27P42677 84 aaKnown RBP1.89□□□□□ -2.11
VPS13C-208ENST00000559119 GPR1P46091 355 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 FABP6P51161 128 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 TCTAP57738 103 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 SLC38A11Q08AI6 406 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 VGLL4Q14135 290 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 TAL2Q16559 108 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 RTL8BQ17RB0 113 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 TMEM78Q5T7P6 136 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 SPATA31B1PQ5VZV4 182 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 ZFAND6Q6FIF0 208 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 C11orf71Q6IPW1 123 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 Q6ZR03 302 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 PRSS41Q7RTY9 318 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 C6orf201Q7Z4U5 140 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 TMEM25Q86YD3 366 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 ATOH7Q8N100 152 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 FAM19A2Q8N3H0 131 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 ZADH2Q8N4Q0 377 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 OR8B12Q8NGG6 310 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 OR10G6Q8NH81 332 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 WFDC5Q8TCV5 224 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 LMX1AQ8TE12 382 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 LRRC29Q8WV35 223 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 BMFQ96LC9 184 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 122.5 ms