RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 RPL19P84098 196 aaKnown RBP6.59□□□□□ -1.36
USP3-208ENST00000558285 DEFB114Q30KQ6 69 aa6.59□□□□□ -1.36
USP3-208ENST00000558285 MAJINQ3KP22 176 aa6.59□□□□□ -1.36
USP3-208ENST00000558285 C16orf54Q6UWD8 224 aa6.59□□□□□ -1.36
USP3-208ENST00000558285 SELENOHQ8IZQ5 122 aaKnown RBP6.59□□□□□ -1.36
USP3-208ENST00000558285 RARRES2Q99969 163 aa6.59□□□□□ -1.36
USP3-208ENST00000558285 KRTAP4-7Q9BYR0 210 aa6.59□□□□□ -1.36
USP3-208ENST00000558285 MAP1LC3BQ9GZQ8 125 aa6.59□□□□□ -1.36
USP3-208ENST00000558285 SLC45A2Q9UMX9 530 aa6.59□□□□□ -1.36
USP3-208ENST00000558285 IFNA1P01562 189 aa6.58□□□□□ -1.36
USP3-208ENST00000558285 ESDP10768 282 aa6.58□□□□□ -1.36
USP3-208ENST00000558285 SLC25A6P12236 298 aa6.58□□□□□ -1.36
USP3-208ENST00000558285 RAB11AP62491 216 aa6.58□□□□□ -1.36
USP3-208ENST00000558285 CD300EQ496F6 205 aaPredicted RBP6.58□□□□□ -1.36
USP3-208ENST00000558285 TMEM182Q6ZP80 229 aaPredicted RBP6.58□□□□□ -1.36
USP3-208ENST00000558285 WWC2-AS2Q96NR7 200 aa6.58□□□□□ -1.36
USP3-208ENST00000558285 SPAG8Q99932 426 aaPredicted RBP6.58□□□□□ -1.36
USP3-208ENST00000558285 VAMP8Q9BV40 100 aa6.58□□□□□ -1.36
USP3-208ENST00000558285 UQCR10Q9UDW1 63 aa6.58□□□□□ -1.36
USP3-208ENST00000558285 NAT8Q9UHE5 227 aa6.58□□□□□ -1.36
USP3-208ENST00000558285 FUT9Q9Y231 359 aa6.58□□□□□ -1.36
USP3-208ENST00000558285 S4R3C0 116 aa6.58□□□□□ -1.36
USP3-208ENST00000558285 ZNF705FA8MVS1 300 aaPredicted RBP6.57□□□□□ -1.36
USP3-208ENST00000558285 FAM90A26D6RGX4 464 aa6.57□□□□□ -1.36
USP3-208ENST00000558285 K7EIM0 57 aa6.57□□□□□ -1.36
USP3-208ENST00000558285 ZNF561-AS1K7EIQ3 104 aa6.57□□□□□ -1.36
USP3-208ENST00000558285 CCL25O15444 150 aa6.57□□□□□ -1.36
USP3-208ENST00000558285 P0C879 139 aa6.57□□□□□ -1.36
USP3-208ENST00000558285 ZNF705DP0CH99 300 aaPredicted RBP6.57□□□□□ -1.36
USP3-208ENST00000558285 ZNF705BP0CI00 300 aaPredicted RBP6.57□□□□□ -1.36
USP3-208ENST00000558285 BAXQ07812 192 aa6.57□□□□□ -1.36
USP3-208ENST00000558285 TMEM187Q14656 261 aa6.57□□□□□ -1.36
USP3-208ENST00000558285 FAM90A2PQ658T7 463 aa6.57□□□□□ -1.36
USP3-208ENST00000558285 KCNIP4Q6PIL6 250 aa6.57□□□□□ -1.36
USP3-208ENST00000558285 CYP2G1PQ6ZSU1 146 aa6.57□□□□□ -1.36
USP3-208ENST00000558285 OR51G1Q8NGK1 321 aa6.57□□□□□ -1.36
USP3-208ENST00000558285 OR2G3Q8NGZ4 309 aa6.57□□□□□ -1.36
USP3-208ENST00000558285 NUDT11Q96G61 164 aa6.57□□□□□ -1.36
USP3-208ENST00000558285 SPATA25Q9BR10 227 aa6.57□□□□□ -1.36
USP3-208ENST00000558285 SMIM3Q9BZL3 60 aa6.57□□□□□ -1.36
USP3-208ENST00000558285 LSM5Q9Y4Y9 91 aaKnown RBP6.57□□□□□ -1.36
USP3-208ENST00000558285 TMEM213A2RRL7 107 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 I3L2K1 104 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 K7ERU9 68 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 FRMD6-AS1P0C7T7 363 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 IGHV4-30-4P0DP06 118 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 BCL2P10415 239 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 NPY1RP25929 384 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 C2orf83Q53S99 150 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 TMEM116Q8NCL8 245 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 METTL26Q96S19 204 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 VPS25Q9BRG1 176 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 WFDC1Q9HC57 220 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 COX11Q9Y6N1 276 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 H7BYZ3 331 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 C8orf88P0DMB2 117 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 RNASE2P10153 161 aaKnown RBP6.56□□□□□ -1.36
USP3-208ENST00000558285 FHITP49789 147 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 C19orf35Q6ZS72 473 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 TCF24Q7RTU0 167 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 S100A7AQ86SG5 101 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 OR4C5Q8NGB2 326 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 IL17DQ8TAD2 202 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 GPR146Q96CH1 333 aa6.56□□□□□ -1.36
USP3-208ENST00000558285 PARD6GQ9BYG4 376 aaPredicted RBP6.56□□□□□ -1.36
USP3-208ENST00000558285 MRPS16Q9Y3D3 137 aaKnown RBP6.56□□□□□ -1.36
USP3-208ENST00000558285 SORL1Q92673 2214 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 IGHV3-21A0A0B4J1V1 117 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 OR11H12B2RN74 326 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 TMEM250H0YL14 139 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 CTSGP08311 255 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 OR5G3P0C626 314 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 NBEAP1P0C6P0 100 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 NPPCP23582 126 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 ATP6V0CP27449 155 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 GALR1P47211 349 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 APOC4P55056 127 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 TMEM41BQ5BJD5 291 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 SPINK9Q5DT21 86 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 NMSQ5H8A3 153 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 CT83Q5H943 113 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 TOMM20LQ6UXN7 152 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 HAPLN4Q86UW8 402 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 RPUSD4Q96CM3 377 aaKnown RBP6.55□□□□□ -1.36
USP3-208ENST00000558285 RNF2Q99496 336 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 SH3BGRL3Q9H299 93 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 RPH3ALQ9UNE2 315 aa6.55□□□□□ -1.36
USP3-208ENST00000558285 TRAV9-1A0A075B6T8 112 aa6.54□□□□□ -1.36
USP3-208ENST00000558285 IGHV3-35A0A0C4DH35 117 aa6.54□□□□□ -1.36
USP3-208ENST00000558285 IGHV7-4-1A0A0J9YVY3 117 aa6.54□□□□□ -1.36
USP3-208ENST00000558285 HELTA6NFD8 242 aa6.54□□□□□ -1.36
USP3-208ENST00000558285 SCGB1A1P11684 91 aa6.54□□□□□ -1.36
USP3-208ENST00000558285 MFAP2P55001 183 aa6.54□□□□□ -1.36
USP3-208ENST00000558285 EWSR1Q01844 656 aaKnown RBP eCLIP6.54□□□□□ -1.36
USP3-208ENST00000558285 IZUMO4Q1ZYL8 232 aa6.54□□□□□ -1.36
USP3-208ENST00000558285 PVRIGQ6DKI7 326 aa6.54□□□□□ -1.36
USP3-208ENST00000558285 TMEM61Q8N0U2 210 aa6.54□□□□□ -1.36
USP3-208ENST00000558285 MBD3L1Q8WWY6 194 aa6.54□□□□□ -1.36
USP3-208ENST00000558285 CACNG8Q8WXS5 425 aa6.54□□□□□ -1.36
USP3-208ENST00000558285 FAM110AQ9BQ89 295 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms