RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 PRM2P04554 102 aa6□□□□□ -1.45
USP28-215ENST00000545608 HOXB5P09067 269 aa6□□□□□ -1.45
USP28-215ENST00000545608 SLC25A6P12236 298 aa6□□□□□ -1.45
USP28-215ENST00000545608 HTN3P15516 51 aa6□□□□□ -1.45
USP28-215ENST00000545608 ORM2P19652 201 aa6□□□□□ -1.45
USP28-215ENST00000545608 EIF5AP63241 154 aaKnown RBP6□□□□□ -1.45
USP28-215ENST00000545608 PPP1R1AQ13522 171 aa6□□□□□ -1.45
USP28-215ENST00000545608 RNF212Q495C1 297 aa6□□□□□ -1.45
USP28-215ENST00000545608 GGNBP1Q5YKI7 109 aa6□□□□□ -1.45
USP28-215ENST00000545608 IGFL4Q6B9Z1 124 aa6□□□□□ -1.45
USP28-215ENST00000545608 EIF5AL1Q6IS14 154 aaKnown RBP6□□□□□ -1.45
USP28-215ENST00000545608 AMTNQ6UX39 209 aa6□□□□□ -1.45
USP28-215ENST00000545608 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6□□□□□ -1.45
USP28-215ENST00000545608 STX12Q86Y82 276 aa6□□□□□ -1.45
USP28-215ENST00000545608 THAP6Q8TBB0 222 aa6□□□□□ -1.45
USP28-215ENST00000545608 PCNPQ8WW12 178 aaKnown RBP6□□□□□ -1.45
USP28-215ENST00000545608 FAM210BQ96KR6 192 aa6□□□□□ -1.45
USP28-215ENST00000545608 SLC25A22Q9H936 323 aa6□□□□□ -1.45
USP28-215ENST00000545608 RPRMQ9NS64 109 aa6□□□□□ -1.45
USP28-215ENST00000545608 DOK5Q9P104 306 aa6□□□□□ -1.45
USP28-215ENST00000545608 YTHDF2Q9Y5A9 579 aaKnown RBP6□□□□□ -1.45
USP28-215ENST00000545608 TRAV8-2A0A0B4J237 113 aa5.99□□□□□ -1.45
USP28-215ENST00000545608 PIGBOS1A0A0B4J2F0 54 aa5.99□□□□□ -1.45
USP28-215ENST00000545608 TEX48A0A1B0GUV7 120 aa5.99□□□□□ -1.45
USP28-215ENST00000545608 C1orf196B1AJZ1 125 aa5.99□□□□□ -1.45
USP28-215ENST00000545608 CRXO43186 299 aaPredicted RBP5.99□□□□□ -1.45
USP28-215ENST00000545608 GALR1P47211 349 aa5.99□□□□□ -1.45
USP28-215ENST00000545608 LINC00310P59036 64 aa5.99□□□□□ -1.45
USP28-215ENST00000545608 RRN3P1Q2M238 152 aa5.99□□□□□ -1.45
USP28-215ENST00000545608 SPANXN5Q5MJ07 72 aa5.99□□□□□ -1.45
USP28-215ENST00000545608 Q6ZR54 194 aa5.99□□□□□ -1.45
USP28-215ENST00000545608 UBE2DNLQ8IWF7 75 aa5.99□□□□□ -1.45
USP28-215ENST00000545608 INO80EQ8NBZ0 244 aaPredicted RBP5.99□□□□□ -1.45
USP28-215ENST00000545608 BPIFCQ8NFQ6 507 aa5.99□□□□□ -1.45
USP28-215ENST00000545608 IGF2BP2-AS1Q96M15 143 aa5.99□□□□□ -1.45
USP28-215ENST00000545608 CIB3Q96Q77 187 aaPredicted RBP5.99□□□□□ -1.45
USP28-215ENST00000545608 SLC45A2Q9UMX9 530 aa5.99□□□□□ -1.45
USP28-215ENST00000545608 TMED3Q9Y3Q3 217 aa5.99□□□□□ -1.45
USP28-215ENST00000545608 KIAA1109Q2LD37 5005 aa5.99□□□□□ -1.45
USP28-215ENST00000545608 TMEM218A2RU14 115 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 ZNF705GA8MUZ8 300 aaPredicted RBP5.98□□□□□ -1.45
USP28-215ENST00000545608 H3BP45 60 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 GOSR2O14653 212 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 BCL2L11O43521 198 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 RLN2P04090 185 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 CNN1P51911 297 aaKnown RBP5.98□□□□□ -1.45
USP28-215ENST00000545608 DAD1P61803 113 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 RPP30P78346 268 aaKnown RBP5.98□□□□□ -1.45
USP28-215ENST00000545608 SPINK13Q1W4C9 94 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 SAMD13Q5VXD3 122 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 TMEM88Q6PEY1 159 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 ACOT7LQ6ZUV0 252 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 ZNF546Q86UE3 836 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 KCNRGQ8N5I3 272 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 RNF182Q8N6D2 247 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 OR4D5Q8NGN0 318 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 OR1B1Q8NGR6 318 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 SFT2D1Q8WV19 159 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 SLC25A21Q9BQT8 299 aaPredicted RBP5.98□□□□□ -1.45
USP28-215ENST00000545608 TMEM147Q9BVK8 224 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 SMCO4Q9NRQ5 59 aa5.98□□□□□ -1.45
USP28-215ENST00000545608 CARHSP1Q9Y2V2 147 aaKnown RBP5.98□□□□□ -1.45
USP28-215ENST00000545608 STRAPQ9Y3F4 350 aaKnown RBP5.98□□□□□ -1.45
USP28-215ENST00000545608 PMS2P5A8MQ11 134 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 G3V3Q6 166 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 H3BRN7 92 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 M0R2Z0 102 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 ADAP1O75689 374 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 DUSP14O95147 198 aaKnown RBP5.97□□□□□ -1.45
USP28-215ENST00000545608 PRB4P10163 310 aaPredicted RBP5.97□□□□□ -1.45
USP28-215ENST00000545608 BLOC1S1P78537 153 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 CYCSP99999 105 aaKnown RBP5.97□□□□□ -1.45
USP28-215ENST00000545608 AKR1C1Q04828 323 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 PEA15Q15121 130 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 CYP2G1PQ6ZSU1 146 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 TMEM144Q7Z5S9 345 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 C15orf54Q8N8G6 183 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 STOML3Q8TAV4 291 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 GPR82Q96P67 336 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 SHANK2-AS3Q9BTD1 123 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 TMEM208Q9BTX3 173 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 SEC11CQ9BY50 192 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 SLC25A39Q9BZJ4 359 aaPredicted RBP5.97□□□□□ -1.45
USP28-215ENST00000545608 OR51M1Q9H341 326 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 FAT2Q9NYQ8 4349 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 DNAH17Q9UFH2 4485 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 HECTD4Q9Y4D8 3996 aa5.97□□□□□ -1.45
USP28-215ENST00000545608 DNAH2Q9P225 4427 aa5.96□□□□□ -1.46
USP28-215ENST00000545608 TRAV12-2A0A075B6T6 113 aa5.96□□□□□ -1.46
USP28-215ENST00000545608 C9orf170A2RU37 121 aa5.96□□□□□ -1.46
USP28-215ENST00000545608 SMCO3A2RU48 225 aa5.96□□□□□ -1.46
USP28-215ENST00000545608 FAM74A7A6NL05 159 aa5.96□□□□□ -1.46
USP28-215ENST00000545608 SIX6O95475 246 aa5.96□□□□□ -1.46
USP28-215ENST00000545608 TPT1P13693 172 aaKnown RBP5.96□□□□□ -1.46
USP28-215ENST00000545608 AZU1P20160 251 aa5.96□□□□□ -1.46
USP28-215ENST00000545608 RAB5CP51148 216 aa5.96□□□□□ -1.46
USP28-215ENST00000545608 FAM74A3Q4VXF1 159 aa5.96□□□□□ -1.46
USP28-215ENST00000545608 C10orf91Q5T1B1 145 aa5.96□□□□□ -1.46
USP28-215ENST00000545608 BAP18Q8IXM2 172 aa5.96□□□□□ -1.46
USP28-215ENST00000545608 ZNF471Q9BX82 626 aaPredicted RBP5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms