RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 GGTLC3B5MD39 225 aa7.59□□□□□ -1.2
CLIP1-212ENST00000540304 C9JCJ5 164 aa7.59□□□□□ -1.2
CLIP1-212ENST00000540304 SMIM17P0DL12 118 aa7.59□□□□□ -1.2
CLIP1-212ENST00000540304 PYYP10082 97 aa7.59□□□□□ -1.2
CLIP1-212ENST00000540304 TIGITQ495A1 244 aa7.59□□□□□ -1.2
CLIP1-212ENST00000540304 KLF17Q5JT82 389 aaPredicted RBP7.59□□□□□ -1.2
CLIP1-212ENST00000540304 DEFB125Q8N687 156 aa7.59□□□□□ -1.2
CLIP1-212ENST00000540304 FXYD5Q96DB9 178 aa7.59□□□□□ -1.2
CLIP1-212ENST00000540304 FANCD2OSQ96PS1 177 aa7.59□□□□□ -1.2
CLIP1-212ENST00000540304 PYGO2Q9BRQ0 406 aa7.59□□□□□ -1.2
CLIP1-212ENST00000540304 TP73-AS1Q9UF72 201 aa7.59□□□□□ -1.2
CLIP1-212ENST00000540304 HSPB8Q9UJY1 196 aa7.59□□□□□ -1.2
CLIP1-212ENST00000540304 S4R3C0 116 aa7.59□□□□□ -1.2
CLIP1-212ENST00000540304 TRAV40A0A0B4J280 105 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 A1L4Q6 167 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 DIRC3C9JPN6 131 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 IGKV1-17P01599 117 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 PFN1P07737 140 aaKnown RBP7.58□□□□□ -1.2
CLIP1-212ENST00000540304 MSMBP08118 114 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 EGR2P11161 476 aaPredicted RBP7.58□□□□□ -1.2
CLIP1-212ENST00000540304 OR5B12Q96R08 314 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 CHRDL1Q9BU40 450 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 FBXL7Q9UJT9 491 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 HIGD1AQ9Y241 93 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 IGHV3OR16-10A0A075B7F0 116 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 MUC21A0A0G2JKD1 596 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 MUC21A0A140T8X8 626 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 CRYBB3P26998 211 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 FAM3BP58499 235 aaPredicted RBP7.58□□□□□ -1.2
CLIP1-212ENST00000540304 TPPP2P59282 170 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 LYZP61626 148 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 RPL24P83731 157 aaKnown RBP7.58□□□□□ -1.2
CLIP1-212ENST00000540304 MUC21Q5SSG8 566 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 PTH2Q96A98 100 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 NRN1Q9NPD7 142 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 LY96Q9Y6Y9 160 aa7.58□□□□□ -1.2
CLIP1-212ENST00000540304 NBPF19A0A087WUL8 3843 aa7.57□□□□□ -1.2
CLIP1-212ENST00000540304 PTPN13Q12923 2485 aa7.57□□□□□ -1.2
CLIP1-212ENST00000540304 SLC25A16P16260 332 aa7.57□□□□□ -1.2
CLIP1-212ENST00000540304 GALR1P47211 349 aa7.57□□□□□ -1.2
CLIP1-212ENST00000540304 KRTDAPP60985 99 aa7.57□□□□□ -1.2
CLIP1-212ENST00000540304 SGMS2Q8NHU3 365 aa7.57□□□□□ -1.2
CLIP1-212ENST00000540304 OCC1Q8TAD7 63 aa7.57□□□□□ -1.2
CLIP1-212ENST00000540304 SPATA25Q9BR10 227 aa7.57□□□□□ -1.2
CLIP1-212ENST00000540304 NPFFR1Q9GZQ6 430 aa7.57□□□□□ -1.2
CLIP1-212ENST00000540304 MDFIC2A0A1B0GVS7 189 aa7.57□□□□□ -1.2
CLIP1-212ENST00000540304 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.57□□□□□ -1.2
CLIP1-212ENST00000540304 PRB4P10163 310 aaPredicted RBP7.57□□□□□ -1.2
CLIP1-212ENST00000540304 MFAP4P55083 255 aa7.57□□□□□ -1.2
CLIP1-212ENST00000540304 GPR82Q96P67 336 aa7.57□□□□□ -1.2
CLIP1-212ENST00000540304 UBR5O95071 2799 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-212ENST00000540304 B4DSR2 109 aa7.56□□□□□ -1.2
CLIP1-212ENST00000540304 LINC00310P59036 64 aa7.56□□□□□ -1.2
CLIP1-212ENST00000540304 BRD3OSQ6XYD6 125 aa7.56□□□□□ -1.2
CLIP1-212ENST00000540304 KLHDC1Q8N7A1 406 aa7.56□□□□□ -1.2
CLIP1-212ENST00000540304 C7orf69Q9H7B7 122 aa7.56□□□□□ -1.2
CLIP1-212ENST00000540304 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.56□□□□□ -1.21e-6■■■■□ 19.9
CLIP1-212ENST00000540304 CSPG4Q6UVK1 2322 aa7.56□□□□□ -1.2
CLIP1-212ENST00000540304 GP9P14770 177 aa7.56□□□□□ -1.2
CLIP1-212ENST00000540304 SRP14P37108 136 aaKnown RBP7.56□□□□□ -1.2
CLIP1-212ENST00000540304 GNG4P50150 75 aa7.56□□□□□ -1.2
CLIP1-212ENST00000540304 YPEL3P61236 119 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-212ENST00000540304 CENPWQ5EE01 88 aa7.56□□□□□ -1.2
CLIP1-212ENST00000540304 ZNF329Q86UD4 541 aa7.56□□□□□ -1.2
CLIP1-212ENST00000540304 ATOH7Q8N100 152 aa7.56□□□□□ -1.2
CLIP1-212ENST00000540304 C5orf56Q8N8D9 126 aa7.56□□□□□ -1.2
CLIP1-212ENST00000540304 FAM110DQ8TAY7 271 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-212ENST00000540304 ZNF418Q8TF45 676 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-212ENST00000540304 SLC25A39Q9BZJ4 359 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-212ENST00000540304 C21orf62Q9NYP8 219 aa7.56□□□□□ -1.2
CLIP1-212ENST00000540304 TP53TG3Q9ULZ0 132 aa7.56□□□□□ -1.2
CLIP1-212ENST00000540304 GRIFINA4D1Z8 144 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 ATP6V0E1O15342 81 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 OR2J3O76001 311 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 IGHV4-38-2P0DP08 117 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 HIST1H1AQ02539 215 aaPredicted RBP7.55□□□□□ -1.2
CLIP1-212ENST00000540304 Q56UQ5 140 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 BVES-AS1Q5T3Y7 98 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 KCNIP4Q6PIL6 250 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 MOB4Q9Y3A3 225 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 SH2D7A6NKC9 451 aaPredicted RBP7.55□□□□□ -1.2
CLIP1-212ENST00000540304 H3BTX0 84 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 K7EN84 100 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 PF4P02776 101 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 MYCNOSP40205 109 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 ECSCRQ19T08 205 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 ZNF491Q8N8L2 437 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 RNF125Q96EQ8 232 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 RCHY1Q96PM5 261 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 TMEM14CQ9P0S9 112 aa7.55□□□□□ -1.2
CLIP1-212ENST00000540304 WI2-2373I1.2A0A1W2PRP0 233 aa7.54□□□□□ -1.2
CLIP1-212ENST00000540304 FAM231BA6NCW3 169 aa7.54□□□□□ -1.2
CLIP1-212ENST00000540304 F8W735 103 aaPredicted RBP7.54□□□□□ -1.2
CLIP1-212ENST00000540304 NUDT3O95989 172 aa7.54□□□□□ -1.2
CLIP1-212ENST00000540304 KLK9Q2XQG4 91 aa7.54□□□□□ -1.2
CLIP1-212ENST00000540304 TMEM219Q86XT9 240 aa7.54□□□□□ -1.2
CLIP1-212ENST00000540304 OR10G8Q8NGN5 311 aa7.54□□□□□ -1.2
CLIP1-212ENST00000540304 PIFOQ8TCI5 191 aa7.54□□□□□ -1.2
CLIP1-212ENST00000540304 KLK9Q9UKQ9 250 aa7.54□□□□□ -1.2
CLIP1-212ENST00000540304 A0A087WX48 190 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms