RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 PPP5D1E7EU14 171 aa9.18□□□□□ -0.94
CLIP1-208ENST00000537004 HIST1H1EP10412 219 aaKnown RBP9.18□□□□□ -0.94
CLIP1-208ENST00000537004 ERVFC1-1P60608 527 aa9.18□□□□□ -0.94
CLIP1-208ENST00000537004 JOSD1Q15040 202 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-208ENST00000537004 BPIFA4PQ86YQ2 179 aa9.18□□□□□ -0.94
CLIP1-208ENST00000537004 OR4X2Q8NGF9 303 aa9.18□□□□□ -0.94
CLIP1-208ENST00000537004 ZNF502Q8TBZ5 544 aa9.18□□□□□ -0.94
CLIP1-208ENST00000537004 NDUFAF3Q9BU61 184 aa9.18□□□□□ -0.94
CLIP1-208ENST00000537004 PRO1933Q9H354 126 aa9.18□□□□□ -0.94
CLIP1-208ENST00000537004 EPDR1Q9UM22 224 aa9.18□□□□□ -0.94
CLIP1-208ENST00000537004 TRAV34A0A0B4J273 112 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 SLC17A3O00476 420 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 ISLRO14498 428 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 GCGP01275 180 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 TRGC1P0CF51 173 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 ADMP35318 185 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 NUTF2P61970 127 aaKnown RBP9.17□□□□□ -0.94
CLIP1-208ENST00000537004 OXLD1Q5BKU9 147 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 GFI1BQ5VTD9 330 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 S100A7AQ86SG5 101 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 C5orf17Q8NAS9 161 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 CHRDL1Q9BU40 450 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 TSSC4Q9Y5U2 329 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-208ENST00000537004 PHOX2AO14813 284 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 TYMSP04818 313 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 MGST1P10620 155 aaKnown RBP9.17□□□□□ -0.94
CLIP1-208ENST00000537004 GPR183P32249 361 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 NHLRC2Q8NBF2 726 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 OR4F17Q8NGA8 305 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 FRZBQ92765 325 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 HIST1H2BLQ99880 126 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 RPH3ALQ9UNE2 315 aa9.17□□□□□ -0.94
CLIP1-208ENST00000537004 TRAV41A0A0B4J266 112 aa9.16□□□□□ -0.94
CLIP1-208ENST00000537004 PRB2P02812 416 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-208ENST00000537004 IGLC2P0DOY2 106 aa9.16□□□□□ -0.94
CLIP1-208ENST00000537004 PF4V1P10720 104 aa9.16□□□□□ -0.94
CLIP1-208ENST00000537004 CRIP2P52943 208 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-208ENST00000537004 TMEM183BQ1AE95 376 aa9.16□□□□□ -0.94
CLIP1-208ENST00000537004 C19orf54Q5BKX5 351 aa9.16□□□□□ -0.94
CLIP1-208ENST00000537004 MS4A10Q96PG2 267 aa9.16□□□□□ -0.94
CLIP1-208ENST00000537004 ATG101Q9BSB4 218 aa9.16□□□□□ -0.94
CLIP1-208ENST00000537004 RNASE7Q9H1E1 156 aaKnown RBP9.16□□□□□ -0.94
CLIP1-208ENST00000537004 OTORQ9NRC9 128 aa9.16□□□□□ -0.94
CLIP1-208ENST00000537004 IL36BQ9NZH7 164 aa9.16□□□□□ -0.94
CLIP1-208ENST00000537004 RNF24Q9Y225 148 aa9.16□□□□□ -0.94
CLIP1-208ENST00000537004 V9GYV3 84 aa9.16□□□□□ -0.94
CLIP1-208ENST00000537004 TRBV19A0A075B6N1 114 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 MRPS12O15235 138 aaKnown RBP9.15□□□□□ -0.94
CLIP1-208ENST00000537004 RAB4AP20338 218 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 UBE2G1P62253 170 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 PDZD11Q5EBL8 140 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 BAGE2Q86Y30 109 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 BTF3L4Q96K17 158 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 CCDC140Q96MF4 163 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 OSTCQ9NRP0 149 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 KLF12Q9Y4X4 402 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 DNAH3Q8TD57 4116 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 ZNF320A2RRD8 509 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 TCRAP04437 139 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 RPLP1P05386 114 aaKnown RBP9.15□□□□□ -0.94
CLIP1-208ENST00000537004 CLEC3BP05452 202 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 RPEL1Q2QD12 228 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 IBA57Q5T440 356 aaKnown RBP9.15□□□□□ -0.94
CLIP1-208ENST00000537004 TMEM183AQ8IXX5 376 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 EXOC3-AS1Q8N2X6 119 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 EEF1AKMT3Q96AZ1 226 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 C17orf77Q96MU5 243 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 DUX3Q96PT4 197 aa9.15□□□□□ -0.94
CLIP1-208ENST00000537004 IGHV3-35A0A0C4DH35 117 aa9.14□□□□□ -0.95
CLIP1-208ENST00000537004 IGF1P05019 195 aa9.14□□□□□ -0.95
CLIP1-208ENST00000537004 CLEC19AQ6UXS0 136 aa9.14□□□□□ -0.95
CLIP1-208ENST00000537004 C8orf86Q6ZUL3 223 aa9.14□□□□□ -0.95
CLIP1-208ENST00000537004 FMC1Q96HJ9 113 aa9.14□□□□□ -0.95
CLIP1-208ENST00000537004 SGK494Q96LW2 274 aa9.14□□□□□ -0.95
CLIP1-208ENST00000537004 RABAC1Q9UI14 185 aa9.14□□□□□ -0.95
CLIP1-208ENST00000537004 TRAV9-1A0A075B6T8 112 aa9.14□□□□□ -0.95
CLIP1-208ENST00000537004 TRBV7-1A0A0A6YYK4 115 aa9.14□□□□□ -0.95
CLIP1-208ENST00000537004 GZMBP10144 247 aa9.14□□□□□ -0.95
CLIP1-208ENST00000537004 SLC35B1P78383 322 aa9.14□□□□□ -0.95
CLIP1-208ENST00000537004 CMTM2Q8TAZ6 248 aa9.14□□□□□ -0.95
CLIP1-208ENST00000537004 ZNF414Q96IQ9 312 aa9.14□□□□□ -0.95
CLIP1-208ENST00000537004 IGHV3OR16-8A0A075B7F1 116 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 BMPR1BO00238 502 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 PF4P02776 101 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 IGLL1P15814 213 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 CFHR3Q02985 330 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 ATP5G2Q06055 141 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 ACTL10Q5JWF8 245 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 SAMD5Q5TGI4 173 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 TOMM20LQ6UXN7 152 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 SIGLEC15Q6ZMC9 328 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 LYPD1Q8N2G4 141 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 ZNF664Q8N3J9 261 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 KLHL30-AS1Q8NEE0 82 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 TMEM190Q8WZ59 177 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 GPR82Q96P67 336 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 ZFAND3Q9H8U3 227 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 GNB4Q9HAV0 340 aa9.13□□□□□ -0.95
CLIP1-208ENST00000537004 FAM223BA6NKX1 122 aa9.12□□□□□ -0.95
CLIP1-208ENST00000537004 DEFB136Q30KP8 78 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms