RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 CTXND1A0A1B0GTU2 59 aa11.42□□□□□ -0.58
CHMP4A-207ENST00000533523 A0A1W2PPV4 95 aa11.42□□□□□ -0.58
CHMP4A-207ENST00000533523 K7EQG2 157 aa11.42□□□□□ -0.58
CHMP4A-207ENST00000533523 BUB3O43684 328 aa11.42□□□□□ -0.58
CHMP4A-207ENST00000533523 S100A7P31151 101 aa11.42□□□□□ -0.58
CHMP4A-207ENST00000533523 MIR17HGQ75NE6 70 aa11.42□□□□□ -0.58
CHMP4A-207ENST00000533523 LINC00305Q7Z4B0 112 aa11.42□□□□□ -0.58
CHMP4A-207ENST00000533523 PCNPQ8WW12 178 aaKnown RBP11.42□□□□□ -0.58
CHMP4A-207ENST00000533523 RAB24Q969Q5 203 aa11.42□□□□□ -0.58
CHMP4A-207ENST00000533523 SAT2Q96F10 170 aaPredicted RBP11.42□□□□□ -0.58
CHMP4A-207ENST00000533523 MRPL32Q9BYC8 188 aaKnown RBP11.42□□□□□ -0.58
CHMP4A-207ENST00000533523 SLC25A39Q9BZJ4 359 aaPredicted RBP11.42□□□□□ -0.58
CHMP4A-207ENST00000533523 SEPSECSQ9HD40 501 aaKnown RBP11.42□□□□□ -0.58
CHMP4A-207ENST00000533523 H3BRN7 92 aa11.41□□□□□ -0.58
CHMP4A-207ENST00000533523 HLA-DMBP28068 263 aa11.41□□□□□ -0.58
CHMP4A-207ENST00000533523 BLOC1S1P78537 153 aa11.41□□□□□ -0.58
CHMP4A-207ENST00000533523 MORN5Q5VZ52 161 aa11.41□□□□□ -0.58
CHMP4A-207ENST00000533523 SIGLEC15Q6ZMC9 328 aa11.41□□□□□ -0.58
CHMP4A-207ENST00000533523 Q6ZTC4 211 aa11.41□□□□□ -0.58
CHMP4A-207ENST00000533523 S100A7AQ86SG5 101 aa11.41□□□□□ -0.58
CHMP4A-207ENST00000533523 LRRC20Q8TCA0 184 aa11.41□□□□□ -0.58
CHMP4A-207ENST00000533523 SHANK2-AS3Q9BTD1 123 aa11.41□□□□□ -0.58
CHMP4A-207ENST00000533523 SCRT1Q9BWW7 348 aa11.41□□□□□ -0.58
CHMP4A-207ENST00000533523 HRH4Q9H3N8 390 aa11.41□□□□□ -0.58
CHMP4A-207ENST00000533523 IGHV4-4A0A075B6R2 117 aa11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 TRAV5A0A0B4J249 113 aa11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 A0A1B0GVY2 172 aa11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 MAP1LC3B2A6NCE7 125 aa11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 HMGB3O15347 200 aaKnown RBP11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 NMBP08949 121 aa11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 RBMY1A1P0DJD3 496 aaKnown RBP11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 RBMY1CP0DJD4 496 aa11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 RAB14P61106 215 aa11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 RBMY1FQ15415 496 aaKnown RBP11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 C1orf194Q5T5A4 169 aa11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 LCN15Q6UWW0 184 aa11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 DCANP1Q8TF63 244 aa11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 MBD3L1Q8WWY6 194 aa11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 MAP1LC3BQ9GZQ8 125 aa11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 NRN1Q9NPD7 142 aa11.4□□□□□ -0.58
CHMP4A-207ENST00000533523 TRAV10A0A0B4J240 114 aa11.39□□□□□ -0.59
CHMP4A-207ENST00000533523 ZNF98A6NK75 572 aa11.39□□□□□ -0.59
CHMP4A-207ENST00000533523 H2AFB1P0C5Y9 115 aa11.39□□□□□ -0.59
CHMP4A-207ENST00000533523 TAS2R45P59539 299 aa11.39□□□□□ -0.59
CHMP4A-207ENST00000533523 SNRPD3P62318 126 aaKnown RBP11.39□□□□□ -0.59
CHMP4A-207ENST00000533523 LINC00336Q6ZUF6 198 aa11.39□□□□□ -0.59
CHMP4A-207ENST00000533523 SFT2D1Q8WV19 159 aa11.39□□□□□ -0.59
CHMP4A-207ENST00000533523 FAM167A-AS1Q96KT0 104 aa11.39□□□□□ -0.59
CHMP4A-207ENST00000533523 SLC25A2Q9BXI2 301 aa11.39□□□□□ -0.59
CHMP4A-207ENST00000533523 A0A1B0GV50 99 aa11.38□□□□□ -0.59
CHMP4A-207ENST00000533523 KNCNA6PVL3 124 aa11.38□□□□□ -0.59
CHMP4A-207ENST00000533523 GIG44P09565 113 aaPredicted RBP11.38□□□□□ -0.59
CHMP4A-207ENST00000533523 ZNF688P0C7X2 276 aa11.38□□□□□ -0.59
CHMP4A-207ENST00000533523 STAG3L2P0CL84 134 aa11.38□□□□□ -0.59
CHMP4A-207ENST00000533523 STAG3L3P0CL85 134 aa11.38□□□□□ -0.59
CHMP4A-207ENST00000533523 MIFP14174 115 aa11.38□□□□□ -0.59
CHMP4A-207ENST00000533523 FGF8P55075 233 aaPredicted RBP11.38□□□□□ -0.59
CHMP4A-207ENST00000533523 KHDC3LQ587J8 217 aa11.38□□□□□ -0.59
CHMP4A-207ENST00000533523 TRPT1Q86TN4 253 aaKnown RBP11.38□□□□□ -0.59
CHMP4A-207ENST00000533523 TRAV1-1A0A0B4J248 108 aa11.37□□□□□ -0.59
CHMP4A-207ENST00000533523 OR7C2O60412 319 aa11.37□□□□□ -0.59
CHMP4A-207ENST00000533523 HBE1P02100 147 aa11.37□□□□□ -0.59
CHMP4A-207ENST00000533523 ARL14EPLP0DKL9 152 aa11.37□□□□□ -0.59
CHMP4A-207ENST00000533523 CLLU1Q5K131 121 aa11.37□□□□□ -0.59
CHMP4A-207ENST00000533523 SAMD13Q5VXD3 122 aa11.37□□□□□ -0.59
CHMP4A-207ENST00000533523 MORN3Q6PF18 240 aaPredicted RBP11.37□□□□□ -0.59
CHMP4A-207ENST00000533523 CLEC5AQ9NY25 188 aa11.37□□□□□ -0.59
CHMP4A-207ENST00000533523 CXorf1O96002 111 aa11.36□□□□□ -0.59
CHMP4A-207ENST00000533523 PSMG4Q5JS54 123 aa11.36□□□□□ -0.59
CHMP4A-207ENST00000533523 ACTL10Q5JWF8 245 aa11.36□□□□□ -0.59
CHMP4A-207ENST00000533523 PQLC2Q6ZP29 291 aa11.36□□□□□ -0.59
CHMP4A-207ENST00000533523 OR8I2Q8N0Y5 310 aa11.36□□□□□ -0.59
CHMP4A-207ENST00000533523 ZNF503Q96F45 646 aa11.36□□□□□ -0.59
CHMP4A-207ENST00000533523 PAXXQ9BUH6 204 aa11.36□□□□□ -0.59
CHMP4A-207ENST00000533523 CELA1Q9UNI1 258 aa11.36□□□□□ -0.59
CHMP4A-207ENST00000533523 RNF24Q9Y225 148 aa11.36□□□□□ -0.59
CHMP4A-207ENST00000533523 X6R8D5 127 aa11.36□□□□□ -0.59
CHMP4A-207ENST00000533523 TEX46H3BTG2 121 aa11.35□□□□□ -0.59
CHMP4A-207ENST00000533523 PYYP10082 97 aa11.35□□□□□ -0.59
CHMP4A-207ENST00000533523 GCHFRP30047 84 aa11.35□□□□□ -0.59
CHMP4A-207ENST00000533523 ID1P41134 155 aa11.35□□□□□ -0.59
CHMP4A-207ENST00000533523 GALR1P47211 349 aa11.35□□□□□ -0.59
CHMP4A-207ENST00000533523 CCL20P78556 96 aa11.35□□□□□ -0.59
CHMP4A-207ENST00000533523 IQCF2Q8IXL9 164 aa11.35□□□□□ -0.59
CHMP4A-207ENST00000533523 LYPD6BQ8NI32 183 aa11.35□□□□□ -0.59
CHMP4A-207ENST00000533523 TMEM14CQ9P0S9 112 aa11.35□□□□□ -0.59
CHMP4A-207ENST00000533523 AMBPP02760 352 aa11.34□□□□□ -0.59
CHMP4A-207ENST00000533523 RPL7P18124 248 aaKnown RBP11.34□□□□□ -0.59
CHMP4A-207ENST00000533523 MEOX2P50222 304 aa11.34□□□□□ -0.59
CHMP4A-207ENST00000533523 UBE2L3P68036 154 aaKnown RBP11.34□□□□□ -0.59
CHMP4A-207ENST00000533523 BPIFA4PQ86YQ2 179 aa11.34□□□□□ -0.59
CHMP4A-207ENST00000533523 GPR82Q96P67 336 aa11.34□□□□□ -0.59
CHMP4A-207ENST00000533523 OR51M1Q9H341 326 aa11.34□□□□□ -0.59
CHMP4A-207ENST00000533523 TMPRSS5Q9H3S3 457 aa11.34□□□□□ -0.59
CHMP4A-207ENST00000533523 DEFB131BA0A096LNP1 70 aa11.33□□□□□ -0.6
CHMP4A-207ENST00000533523 MRPS12O15235 138 aaKnown RBP11.33□□□□□ -0.6
CHMP4A-207ENST00000533523 OR10J4P0C629 311 aa11.33□□□□□ -0.6
CHMP4A-207ENST00000533523 PSMB3P49720 205 aa11.33□□□□□ -0.6
CHMP4A-207ENST00000533523 FXYD5Q96DB9 178 aa11.33□□□□□ -0.6
CHMP4A-207ENST00000533523 M0R2N4 97 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms