RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 MRPL53Q96EL3 112 aaKnown RBP14.94□□□□□ -0.02
USP53-208ENST00000514305 MAP1LC3BQ9GZQ8 125 aa14.94□□□□□ -0.02
USP53-208ENST00000514305 SRD5A3Q9H8P0 318 aa14.94□□□□□ -0.02
USP53-208ENST00000514305 C19orf73Q9NVV2 129 aa14.94□□□□□ -0.02
USP53-208ENST00000514305 HBE1P02100 147 aa14.93□□□□□ -0.02
USP53-208ENST00000514305 GCHFRP30047 84 aa14.93□□□□□ -0.02
USP53-208ENST00000514305 CSN1S1P47710 185 aa14.93□□□□□ -0.02
USP53-208ENST00000514305 PPT1P50897 306 aa14.93□□□□□ -0.02
USP53-208ENST00000514305 FOXI2Q6ZQN5 318 aa14.93□□□□□ -0.02
USP53-208ENST00000514305 FAM24BQ8N5W8 94 aa14.93□□□□□ -0.02
USP53-208ENST00000514305 SFT2D1Q8WV19 159 aa14.93□□□□□ -0.02
USP53-208ENST00000514305 MBD3L1Q8WWY6 194 aa14.93□□□□□ -0.02
USP53-208ENST00000514305 C17orf77Q96MU5 243 aa14.93□□□□□ -0.02
USP53-208ENST00000514305 DUSP14O95147 198 aaKnown RBP14.92□□□□□ -0.02
USP53-208ENST00000514305 SNRPCP09234 159 aaKnown RBP14.92□□□□□ -0.02
USP53-208ENST00000514305 APRG1Q8IVJ8 170 aa14.92□□□□□ -0.02
USP53-208ENST00000514305 SPATA25Q9BR10 227 aa14.92□□□□□ -0.02
USP53-208ENST00000514305 NKX6-2Q9C056 277 aaPredicted RBP14.92□□□□□ -0.02
USP53-208ENST00000514305 LOC102724200A0A096LPH7 203 aaPredicted RBP14.91□□□□□ -0.02
USP53-208ENST00000514305 H3BTX0 84 aa14.91□□□□□ -0.02
USP53-208ENST00000514305 NUTF2P61970 127 aaKnown RBP14.91□□□□□ -0.02
USP53-208ENST00000514305 BLOC1S1P78537 153 aa14.91□□□□□ -0.02
USP53-208ENST00000514305 RXFP4Q8TDU9 374 aa14.91□□□□□ -0.02
USP53-208ENST00000514305 ZNF503Q96F45 646 aa14.91□□□□□ -0.02
USP53-208ENST00000514305 TRAV8-2A0A0B4J237 113 aa14.9□□□□□ -0.02
USP53-208ENST00000514305 APOC4P55056 127 aa14.9□□□□□ -0.02
USP53-208ENST00000514305 RANP62826 216 aaKnown RBP14.9□□□□□ -0.02
USP53-208ENST00000514305 ZNF726P1Q15940 193 aa14.9□□□□□ -0.02
USP53-208ENST00000514305 ARL6IP6Q8N6S5 226 aa14.9□□□□□ -0.02
USP53-208ENST00000514305 CMTM2Q8TAZ6 248 aa14.9□□□□□ -0.02
USP53-208ENST00000514305 SUN5Q8TC36 379 aa14.9□□□□□ -0.02
USP53-208ENST00000514305 ZNF705EA8MWA4 302 aaPredicted RBP14.89□□□□□ -0.03
USP53-208ENST00000514305 IFNA7P01567 189 aa14.89□□□□□ -0.03
USP53-208ENST00000514305 ACTL10Q5JWF8 245 aa14.89□□□□□ -0.03
USP53-208ENST00000514305 ALKAL2Q6UX46 152 aa14.89□□□□□ -0.03
USP53-208ENST00000514305 OR10J6PQ8NGY7 276 aa14.89□□□□□ -0.03
USP53-208ENST00000514305 RPUSD4Q96CM3 377 aaKnown RBP14.89□□□□□ -0.03
USP53-208ENST00000514305 Q9H3A6 140 aa14.89□□□□□ -0.03
USP53-208ENST00000514305 SAV1Q9H4B6 383 aaPredicted RBP14.89□□□□□ -0.03
USP53-208ENST00000514305 OTORQ9NRC9 128 aa14.89□□□□□ -0.03
USP53-208ENST00000514305 A0A1W2PRE2 83 aa14.88□□□□□ -0.03
USP53-208ENST00000514305 SLC17A3O00476 420 aa14.88□□□□□ -0.03
USP53-208ENST00000514305 NDUFB4O95168 129 aa14.88□□□□□ -0.03
USP53-208ENST00000514305 HLA-DRB4P13762 266 aa14.88□□□□□ -0.03
USP53-208ENST00000514305 FHITP49789 147 aa14.88□□□□□ -0.03
USP53-208ENST00000514305 ICAM4Q14773 271 aa14.88□□□□□ -0.03
USP53-208ENST00000514305 RNF182Q8N6D2 247 aa14.88□□□□□ -0.03
USP53-208ENST00000514305 ARL2-SNX15V9GYD0 113 aa14.88□□□□□ -0.03
USP53-208ENST00000514305 HLA-DRB4X5D2U9 266 aa14.88□□□□□ -0.03
USP53-208ENST00000514305 TRAV1-1A0A0B4J248 108 aa14.87□□□□□ -0.03
USP53-208ENST00000514305 PGPA6NDG6 321 aa14.87□□□□□ -0.03
USP53-208ENST00000514305 EIF3GO75821 320 aaKnown RBP eCLIP14.87□□□□□ -0.03
USP53-208ENST00000514305 FGF8P55075 233 aaPredicted RBP14.87□□□□□ -0.03
USP53-208ENST00000514305 HAGHQ16775 308 aa14.87□□□□□ -0.03
USP53-208ENST00000514305 IGFL4Q6B9Z1 124 aa14.87□□□□□ -0.03
USP53-208ENST00000514305 ZFAND6Q6FIF0 208 aa14.87□□□□□ -0.03
USP53-208ENST00000514305 MORN3Q6PF18 240 aaPredicted RBP14.87□□□□□ -0.03
USP53-208ENST00000514305 SSX7Q7RTT5 188 aa14.87□□□□□ -0.03
USP53-208ENST00000514305 C20orf173Q96LM9 149 aa14.87□□□□□ -0.03
USP53-208ENST00000514305 WFDC10AQ9H1F0 79 aa14.87□□□□□ -0.03
USP53-208ENST00000514305 PPP1R14DQ9NXH3 145 aa14.87□□□□□ -0.03
USP53-208ENST00000514305 KIR2DL5BA0A0G2JN68 375 aa14.86□□□□□ -0.03
USP53-208ENST00000514305 KIR2DL5BA0A0G2JPC4 375 aa14.86□□□□□ -0.03
USP53-208ENST00000514305 A0A0J9YX75 114 aa14.86□□□□□ -0.03
USP53-208ENST00000514305 KNCNA6PVL3 124 aa14.86□□□□□ -0.03
USP53-208ENST00000514305 UBE2CO00762 179 aa14.86□□□□□ -0.03
USP53-208ENST00000514305 KIR2DL5AQ8N109 375 aa14.86□□□□□ -0.03
USP53-208ENST00000514305 EXOC3-AS1Q8N2X6 119 aa14.86□□□□□ -0.03
USP53-208ENST00000514305 KIR2DL5BQ8NHK3 375 aa14.86□□□□□ -0.03
USP53-208ENST00000514305 CLUHP3Q96NS8 147 aa14.86□□□□□ -0.03
USP53-208ENST00000514305 EDA2RQ9HAV5 297 aa14.86□□□□□ -0.03
USP53-208ENST00000514305 SERTM2A0A1B0GWG4 89 aa14.85□□□□□ -0.03
USP53-208ENST00000514305 H3BMM0 161 aa14.85□□□□□ -0.03
USP53-208ENST00000514305 K7EQM0 130 aa14.85□□□□□ -0.03
USP53-208ENST00000514305 IFNA1P01562 189 aa14.85□□□□□ -0.03
USP53-208ENST00000514305 TEX261Q6UWH6 196 aa14.85□□□□□ -0.03
USP53-208ENST00000514305 OR4B1Q8NGF8 309 aa14.85□□□□□ -0.03
USP53-208ENST00000514305 OR8A1Q8NGG7 326 aa14.85□□□□□ -0.03
USP53-208ENST00000514305 C1QTNF4Q9BXJ3 329 aa14.85□□□□□ -0.03
USP53-208ENST00000514305 HLA-DMBP28068 263 aa14.84□□□□□ -0.03
USP53-208ENST00000514305 TAGLN2P37802 199 aaKnown RBP14.84□□□□□ -0.03
USP53-208ENST00000514305 CSTL1Q9H114 145 aa14.84□□□□□ -0.03
USP53-208ENST00000514305 MANBALQ9NQG1 85 aa14.84□□□□□ -0.03
USP53-208ENST00000514305 F6UZH7 168 aa14.83□□□□□ -0.04
USP53-208ENST00000514305 AMBPP02760 352 aa14.83□□□□□ -0.04
USP53-208ENST00000514305 SLC25A5P05141 298 aaKnown RBP14.83□□□□□ -0.04
USP53-208ENST00000514305 RPL35AP18077 110 aaKnown RBP14.83□□□□□ -0.04
USP53-208ENST00000514305 SUMO1P63165 101 aaKnown RBP14.83□□□□□ -0.04
USP53-208ENST00000514305 HIST1H1AQ02539 215 aaPredicted RBP14.83□□□□□ -0.04
USP53-208ENST00000514305 ZNF124Q15973 351 aa14.83□□□□□ -0.04
USP53-208ENST00000514305 TRPT1Q86TN4 253 aaKnown RBP14.83□□□□□ -0.04
USP53-208ENST00000514305 C5orf17Q8NAS9 161 aa14.83□□□□□ -0.04
USP53-208ENST00000514305 LINC00477Q96M19 166 aa14.83□□□□□ -0.04
USP53-208ENST00000514305 TCEAL7Q9BRU2 100 aa14.83□□□□□ -0.04
USP53-208ENST00000514305 TMPRSS5Q9H3S3 457 aa14.83□□□□□ -0.04
USP53-208ENST00000514305 RBAKDNA6NC62 111 aa14.82□□□□□ -0.04
USP53-208ENST00000514305 RBMY1BA6NDE4 496 aaKnown RBP14.82□□□□□ -0.04
USP53-208ENST00000514305 RBMY1EA6NEQ0 496 aaKnown RBP14.82□□□□□ -0.04
USP53-208ENST00000514305 ZNF705FA8MVS1 300 aaPredicted RBP14.82□□□□□ -0.04
USP53-208ENST00000514305 RBMY1DP0C7P1 496 aaKnown RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms