RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 NDUFA11Q86Y39 141 aa6.45□□□□□ -1.38
SF3A1-210ENST00000498259 TMEM183AQ8IXX5 376 aa6.45□□□□□ -1.38
SF3A1-210ENST00000498259 OR9G4Q8NGQ1 327 aa6.45□□□□□ -1.38
SF3A1-210ENST00000498259 OR10J6PQ8NGY7 276 aa6.45□□□□□ -1.38
SF3A1-210ENST00000498259 WIPF2Q8TF74 440 aaPredicted RBP6.45□□□□□ -1.38
SF3A1-210ENST00000498259 DERL1Q9BUN8 251 aa6.45□□□□□ -1.38
SF3A1-210ENST00000498259 OSTCQ9NRP0 149 aa6.45□□□□□ -1.38
SF3A1-210ENST00000498259 LENEPQ9Y5L5 61 aa6.45□□□□□ -1.38
SF3A1-210ENST00000498259 SMAD5-AS1Q9Y6J3 95 aa6.45□□□□□ -1.38
SF3A1-210ENST00000498259 MXRA5Q9NR99 2828 aa6.45□□□□□ -1.38
SF3A1-210ENST00000498259 MYO9AB2RTY4 2548 aa6.45□□□□□ -1.38
SF3A1-210ENST00000498259 NBPF19A0A087WUL8 3843 aa6.45□□□□□ -1.38
SF3A1-210ENST00000498259 IGHV3OR16-13A0A075B7E8 117 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 IGHV3-49A0A0A0MS15 119 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 IGHV3-74A0A0B4J1X5 117 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 TMEM213A2RRL7 107 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 XKRY2A2RUG3 117 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 C2orf70A6NJV1 201 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 CCL24O00175 119 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 SCO1O75880 301 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 APOHP02749 345 aaPredicted RBP6.44□□□□□ -1.38
SF3A1-210ENST00000498259 SNRPCP09234 159 aaKnown RBP6.44□□□□□ -1.38
SF3A1-210ENST00000498259 FOLR2P14207 255 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 PROK1P58294 105 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 TMEM88Q6PEY1 159 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 FAM231DQ6ZW35 169 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 PRNTQ86SH4 94 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.44□□□□□ -1.38
SF3A1-210ENST00000498259 DYNLRB2Q8TF09 96 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 IGF2BP2-AS1Q96M15 143 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 LINC00477Q96M19 166 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 C17orf77Q96MU5 243 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 SIGLEC8Q9NYZ4 499 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 PSG8Q9UQ74 426 aa6.44□□□□□ -1.38
SF3A1-210ENST00000498259 SVEP1Q4LDE5 3571 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 TRBV20OR9-2A0A075B6H5 130 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 TRAV25A0A0B4J276 109 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 TRBV7-9A0A0J9YWB2 115 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 SLC17A3O00476 420 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 P01737 135 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 CD28P10747 220 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 GNG5P63218 68 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 COX19Q49B96 90 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 TCTEX1D4Q5JR98 221 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 Q86TA4 180 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 CBLN2Q8IUK8 224 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 ZNF738Q8NE65 137 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 OR4B1Q8NGF8 309 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 CITED2Q99967 270 aaPredicted RBP6.43□□□□□ -1.38
SF3A1-210ENST00000498259 KRTAP3-3Q9BYR6 98 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 KRTAP3-2Q9BYR7 98 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 SAV1Q9H4B6 383 aaPredicted RBP6.43□□□□□ -1.38
SF3A1-210ENST00000498259 PPP1R14DQ9NXH3 145 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 ZNF492Q9P255 531 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 AKAP9Q99996 3911 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 OTOGQ6ZRI0 2925 aa6.43□□□□□ -1.38
SF3A1-210ENST00000498259 TRAV34A0A0B4J273 112 aa6.42□□□□□ -1.38
SF3A1-210ENST00000498259 FAM231BA6NCW3 169 aa6.42□□□□□ -1.38
SF3A1-210ENST00000498259 ZNF705GA8MUZ8 300 aaPredicted RBP6.42□□□□□ -1.38
SF3A1-210ENST00000498259 A8MWL6 223 aa6.42□□□□□ -1.38
SF3A1-210ENST00000498259 M0R3E3 92 aa6.42□□□□□ -1.38
SF3A1-210ENST00000498259 GATCO43716 136 aaKnown RBP6.42□□□□□ -1.38
SF3A1-210ENST00000498259 ZNF138P52744 262 aa6.42□□□□□ -1.38
SF3A1-210ENST00000498259 RPS20P60866 119 aaKnown RBP6.42□□□□□ -1.38
SF3A1-210ENST00000498259 FHL3Q13643 280 aa6.42□□□□□ -1.38
SF3A1-210ENST00000498259 SMUG1Q53HV7 270 aa6.42□□□□□ -1.38
SF3A1-210ENST00000498259 CT83Q5H943 113 aa6.42□□□□□ -1.38
SF3A1-210ENST00000498259 EBLN2Q6P2I7 272 aa6.42□□□□□ -1.38
SF3A1-210ENST00000498259 GBGT1Q8N5D6 347 aa6.42□□□□□ -1.38
SF3A1-210ENST00000498259 LINC00479Q96M42 142 aa6.42□□□□□ -1.38
SF3A1-210ENST00000498259 ASCL2Q99929 193 aa6.42□□□□□ -1.38
SF3A1-210ENST00000498259 MLST8Q9BVC4 326 aa6.42□□□□□ -1.38
SF3A1-210ENST00000498259 MS4A6AQ9H2W1 248 aa6.42□□□□□ -1.38
SF3A1-210ENST00000498259 TLN2Q9Y4G6 2542 aa6.41□□□□□ -1.38
SF3A1-210ENST00000498259 TRBV24-1A0A075B6N3 115 aa6.41□□□□□ -1.38
SF3A1-210ENST00000498259 OR4C46A6NHA9 309 aa6.41□□□□□ -1.38
SF3A1-210ENST00000498259 DUSP14O95147 198 aaKnown RBP6.41□□□□□ -1.38
SF3A1-210ENST00000498259 SLURP1P55000 103 aa6.41□□□□□ -1.38
SF3A1-210ENST00000498259 FAM162BQ5T6X4 162 aa6.41□□□□□ -1.38
SF3A1-210ENST00000498259 Q6AWC8 147 aa6.41□□□□□ -1.38
SF3A1-210ENST00000498259 PRR27Q6MZM9 219 aa6.41□□□□□ -1.38
SF3A1-210ENST00000498259 C9orf47Q6ZRZ4 202 aa6.41□□□□□ -1.38
SF3A1-210ENST00000498259 COX8CQ7Z4L0 72 aa6.41□□□□□ -1.38
SF3A1-210ENST00000498259 FAM24BQ8N5W8 94 aa6.41□□□□□ -1.38
SF3A1-210ENST00000498259 OR2K2Q8NGT1 345 aa6.41□□□□□ -1.38
SF3A1-210ENST00000498259 BORCS7Q96B45 105 aa6.41□□□□□ -1.38
SF3A1-210ENST00000498259 SPAG8Q99932 426 aaPredicted RBP6.41□□□□□ -1.38
SF3A1-210ENST00000498259 GFRA4Q9GZZ7 299 aa6.41□□□□□ -1.38
SF3A1-210ENST00000498259 IL36BQ9NZH7 164 aa6.41□□□□□ -1.38
SF3A1-210ENST00000498259 CSMD1Q96PZ7 3565 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 A0A1W2PRX2 142 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 PGPEP1LA6NFU8 196 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 FABP5P3A8MUU1 101 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 K7EN84 100 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 IGLV2-11P01706 119 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 IGLV2-8P01709 118 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 PF4P02776 101 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 RAB5AP20339 215 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 TSPOP30536 169 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 FAM3BP58499 235 aaPredicted RBP6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms