RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 C10orf113Q5VZT2 155 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 SPATA31B1PQ5VZV4 182 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 TRPT1Q86TN4 253 aaKnown RBP4.93□□□□□ -1.62
VPS52-219ENST00000493379 BPIFA4PQ86YQ2 179 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 GBGT1Q8N5D6 347 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 OR11H4Q8NGC9 324 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 FAM167A-AS1Q96KT0 104 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 UHRF2Q96PU4 802 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 PSMG3Q9BT73 122 aaPredicted RBP4.93□□□□□ -1.62
VPS52-219ENST00000493379 SCRT1Q9BWW7 348 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 WFDC10AQ9H1F0 79 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 HRH4Q9H3N8 390 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 TUBA4BQ9H853 241 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 KCNIP2Q9NS61 270 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 PPP1R14DQ9NXH3 145 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 CLEC5AQ9NY25 188 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 SELENOKQ9Y6D0 94 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 PXMP4Q9Y6I8 212 aa4.93□□□□□ -1.62
VPS52-219ENST00000493379 DYNC1H1Q14204 4646 aaKnown RBP4.93□□□□□ -1.62
VPS52-219ENST00000493379 GAGE10A6NGK3 116 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 C17orf112F2Z3M2 114 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 H3BMM0 161 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 IFNA5P01569 189 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 ID1P41134 155 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 PDE6HQ13956 83 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 GUK1Q16774 197 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 TMEM41BQ5BJD5 291 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 LEMD1Q68G75 181 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 APRG1Q8IVJ8 170 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 TCTE3Q8IZS6 198 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 INO80EQ8NBZ0 244 aaPredicted RBP4.92□□□□□ -1.62
VPS52-219ENST00000493379 STXBP6Q8NFX7 210 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 SUN5Q8TC36 379 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 RSG1Q9BU20 258 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 MRPL32Q9BYC8 188 aaKnown RBP4.92□□□□□ -1.62
VPS52-219ENST00000493379 CSTL1Q9H114 145 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 ZNF331Q9NQX6 463 aaPredicted RBP4.92□□□□□ -1.62
VPS52-219ENST00000493379 CYTL1Q9NRR1 136 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 DOK5Q9P104 306 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 UBQLN2Q9UHD9 624 aa4.92□□□□□ -1.62
VPS52-219ENST00000493379 IGKV3-7A0A075B6H7 116 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 TRBV19A0A075B6N1 114 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 H3BQ15 152 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 COX7A2P2O60397 106 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 ZNF688P0C7X2 276 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 HIST1H1EP10412 219 aaKnown RBP4.91□□□□□ -1.62
VPS52-219ENST00000493379 SPP1P10451 314 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 HLA-DRB4P13762 266 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 M6PRP20645 277 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 TFPI2P48307 235 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 APOC4P55056 127 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 GCSAMLQ5JQS6 135 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 MORN3Q6PF18 240 aaPredicted RBP4.91□□□□□ -1.62
VPS52-219ENST00000493379 FOXI2Q6ZQN5 318 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 LYPD1Q8N2G4 141 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 KCNRGQ8N5I3 272 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 ARL6IP6Q8N6S5 226 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 ZNF709Q8N972 641 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 CSNK1G2-AS1Q8NCQ2 148 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 SCGB1C1Q8TD33 95 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 C2CD4CQ8TF44 421 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 PPP1R14BQ96C90 147 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 RNF183Q96D59 192 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 DAZAP1Q96EP5 407 aaKnown RBP4.91□□□□□ -1.62
VPS52-219ENST00000493379 OVOL2Q9BRP0 275 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 SLC50A1Q9BRV3 221 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 MFFQ9GZY8 342 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 SAV1Q9H4B6 383 aaPredicted RBP4.91□□□□□ -1.62
VPS52-219ENST00000493379 SLC25A22Q9H936 323 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 FUT9Q9Y231 359 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 HLA-DRB4X5D2U9 266 aa4.91□□□□□ -1.62
VPS52-219ENST00000493379 FXYD6-FXYD2A0A087WZ82 144 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 TRAV5A0A0B4J249 113 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 A0A0D9SG52 128 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 A0A0J9YX75 114 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 KRTAP9-6A0A140TA67 174 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 NDUFB4O95168 129 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 MBP02144 154 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 ATP6V0CP27449 155 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 RBMY1FQ15415 496 aaKnown RBP4.9□□□□□ -1.63
VPS52-219ENST00000493379 PSG3Q16557 428 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 PSMG4Q5JS54 123 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 FAM78BQ5VT40 261 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 IGFL4Q6B9Z1 124 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 LCN15Q6UWW0 184 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 AMTNQ6UX39 209 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 RPP25LQ8N5L8 163 aaKnown RBP4.9□□□□□ -1.63
VPS52-219ENST00000493379 GNPNAT1Q96EK6 184 aaPredicted RBP4.9□□□□□ -1.63
VPS52-219ENST00000493379 MRPL53Q96EL3 112 aaKnown RBP4.9□□□□□ -1.63
VPS52-219ENST00000493379 RCHY1Q96PM5 261 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 SLC25A2Q9BXI2 301 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 SMIM3Q9BZL3 60 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 EDA2RQ9HAV5 297 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 RPRMQ9NS64 109 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 ZNF586Q9NXT0 402 aa4.9□□□□□ -1.63
VPS52-219ENST00000493379 BORCS7-ASMTA0A0B4J1R7 106 aa4.89□□□□□ -1.63
VPS52-219ENST00000493379 ZNF705EA8MWA4 302 aaPredicted RBP4.89□□□□□ -1.63
VPS52-219ENST00000493379 SCGB1D1O95968 90 aa4.89□□□□□ -1.63
VPS52-219ENST00000493379 C1QBP02746 253 aa4.89□□□□□ -1.63
VPS52-219ENST00000493379 NBEAP1P0C6P0 100 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms