RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 PPIFP30405 207 aaKnown RBP16.27■□□□□ 0.2
CCDC88B-208ENST00000492980 FOXA3P55318 350 aaPredicted RBP16.27■□□□□ 0.2
CCDC88B-208ENST00000492980 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.27■□□□□ 0.2
CCDC88B-208ENST00000492980 Q6ZWC4 215 aa16.27■□□□□ 0.2
CCDC88B-208ENST00000492980 C18orf32Q8TCD1 76 aa16.27■□□□□ 0.2
CCDC88B-208ENST00000492980 A8MWP6 167 aa16.27■□□□□ 0.19
CCDC88B-208ENST00000492980 IQCJQ1A5X6 159 aa16.27■□□□□ 0.19
CCDC88B-208ENST00000492980 C1orf194Q5T5A4 169 aa16.27■□□□□ 0.19
CCDC88B-208ENST00000492980 KCNS1Q96KK3 526 aa16.27■□□□□ 0.19
CCDC88B-208ENST00000492980 METTL26Q96S19 204 aa16.27■□□□□ 0.19
CCDC88B-208ENST00000492980 SAMD10Q9BYL1 202 aa16.27■□□□□ 0.19
CCDC88B-208ENST00000492980 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.26■□□□□ 0.193e-6■■□□□ 11.5
CCDC88B-208ENST00000492980 BRI3O95415 125 aa16.26■□□□□ 0.19
CCDC88B-208ENST00000492980 CT45A10P0DMU9 189 aa16.26■□□□□ 0.19
CCDC88B-208ENST00000492980 BLCAPP62952 87 aa16.26■□□□□ 0.19
CCDC88B-208ENST00000492980 COX8CQ7Z4L0 72 aa16.26■□□□□ 0.19
CCDC88B-208ENST00000492980 U3KQE9 123 aa16.26■□□□□ 0.19
CCDC88B-208ENST00000492980 FBLL1A6NHQ2 334 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-208ENST00000492980 ZNF705FA8MVS1 300 aaPredicted RBP16.25■□□□□ 0.19
CCDC88B-208ENST00000492980 ZNF207O43670 478 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-208ENST00000492980 PKIAP61925 76 aa16.25■□□□□ 0.19
CCDC88B-208ENST00000492980 ALKBH7Q9BT30 221 aaPredicted RBP16.25■□□□□ 0.19
CCDC88B-208ENST00000492980 IGHV3OR16-13A0A075B7E8 117 aa16.25■□□□□ 0.19
CCDC88B-208ENST00000492980 IGHV3-74A0A0B4J1X5 117 aa16.25■□□□□ 0.19
CCDC88B-208ENST00000492980 A0A1W2PS18 150 aa16.25■□□□□ 0.19
CCDC88B-208ENST00000492980 H3BUA1 57 aa16.25■□□□□ 0.19
CCDC88B-208ENST00000492980 KLF5Q13887 457 aaPredicted RBP16.25■□□□□ 0.19
CCDC88B-208ENST00000492980 PRR31Q5SQ13 230 aa16.25■□□□□ 0.19
CCDC88B-208ENST00000492980 LCN12Q6JVE5 192 aa16.25■□□□□ 0.19
CCDC88B-208ENST00000492980 Q6ZS46 218 aa16.25■□□□□ 0.19
CCDC88B-208ENST00000492980 PRR25Q96S07 402 aa16.25■□□□□ 0.19
CCDC88B-208ENST00000492980 VGLL1Q99990 258 aa16.25■□□□□ 0.19
CCDC88B-208ENST00000492980 HAX1O00165 279 aa16.24■□□□□ 0.19
CCDC88B-208ENST00000492980 GPX1P07203 203 aa16.24■□□□□ 0.19
CCDC88B-208ENST00000492980 ARL3P36405 182 aa16.24■□□□□ 0.19
CCDC88B-208ENST00000492980 SAPCD1Q5SSQ6 148 aa16.24■□□□□ 0.19
CCDC88B-208ENST00000492980 PRO1933Q9H354 126 aa16.24■□□□□ 0.19
CCDC88B-208ENST00000492980 FBN2P35556 2912 aa16.24■□□□□ 0.19
CCDC88B-208ENST00000492980 IGHV3-49A0A0A0MS15 119 aa16.24■□□□□ 0.19
CCDC88B-208ENST00000492980 SCGB1D1O95968 90 aa16.24■□□□□ 0.19
CCDC88B-208ENST00000492980 CTAG1AP78358 180 aa16.24■□□□□ 0.19
CCDC88B-208ENST00000492980 Q8TAT8 98 aa16.24■□□□□ 0.19
CCDC88B-208ENST00000492980 SIGLECL1Q8N7X8 197 aa16.23■□□□□ 0.19
CCDC88B-208ENST00000492980 SLC50A1Q9BRV3 221 aa16.23■□□□□ 0.19
CCDC88B-208ENST00000492980 NAGKQ9UJ70 344 aa16.23■□□□□ 0.19
CCDC88B-208ENST00000492980 SH2D1AO60880 128 aa16.22■□□□□ 0.19
CCDC88B-208ENST00000492980 TRBV12-3P01733 135 aa16.22■□□□□ 0.19
CCDC88B-208ENST00000492980 CD33P20138 364 aa16.22■□□□□ 0.19
CCDC88B-208ENST00000492980 TSTD3H0UI37 97 aa16.22■□□□□ 0.19
CCDC88B-208ENST00000492980 FAM162BQ5T6X4 162 aa16.22■□□□□ 0.19
CCDC88B-208ENST00000492980 ZNF664Q8N3J9 261 aa16.22■□□□□ 0.19
CCDC88B-208ENST00000492980 RNF182Q8N6D2 247 aa16.22■□□□□ 0.19
CCDC88B-208ENST00000492980 USMG5Q96IX5 58 aa16.22■□□□□ 0.19
CCDC88B-208ENST00000492980 FAM208BQ5VWN6 2430 aa16.21■□□□□ 0.19
CCDC88B-208ENST00000492980 PRAC2D3DTV9 90 aa16.21■□□□□ 0.19
CCDC88B-208ENST00000492980 AMTP48728 403 aa16.21■□□□□ 0.19
CCDC88B-208ENST00000492980 KRTAP10-9P60411 292 aa16.21■□□□□ 0.19
CCDC88B-208ENST00000492980 MAPK1IP1LQ8NDC0 245 aa16.21■□□□□ 0.19
CCDC88B-208ENST00000492980 KLK15Q9H2R5 256 aa16.21■□□□□ 0.19
CCDC88B-208ENST00000492980 ANKRD17O75179 2603 aaKnown RBP16.21■□□□□ 0.19
CCDC88B-208ENST00000492980 A0A1B0GUT8 65 aa16.21■□□□□ 0.18
CCDC88B-208ENST00000492980 J3QLI3 93 aa16.21■□□□□ 0.18
CCDC88B-208ENST00000492980 ZNF324O75467 553 aaPredicted RBP16.21■□□□□ 0.18
CCDC88B-208ENST00000492980 PMCHP20382 165 aa16.21■□□□□ 0.18
CCDC88B-208ENST00000492980 CSMD2Q7Z408 3487 aa16.2■□□□□ 0.18
CCDC88B-208ENST00000492980 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-208ENST00000492980 ARMS2P0C7Q2 107 aa16.2■□□□□ 0.18
CCDC88B-208ENST00000492980 DEFB112Q30KQ8 113 aa16.2■□□□□ 0.18
CCDC88B-208ENST00000492980 MAP1AP78559 2803 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-208ENST00000492980 LRRK2Q5S007 2527 aa16.2■□□□□ 0.18
CCDC88B-208ENST00000492980 TRAV8-2A0A0B4J237 113 aa16.19■□□□□ 0.18
CCDC88B-208ENST00000492980 TGFAP01135 160 aa16.19■□□□□ 0.18
CCDC88B-208ENST00000492980 Q6AWC8 147 aa16.19■□□□□ 0.18
CCDC88B-208ENST00000492980 RNF114Q9Y508 228 aa16.19■□□□□ 0.18
CCDC88B-208ENST00000492980 TMEM189A5PLL7 270 aa16.19■□□□□ 0.18
CCDC88B-208ENST00000492980 IGLV1-40P01703 118 aa16.19■□□□□ 0.18
CCDC88B-208ENST00000492980 PF4V1P10720 104 aa16.19■□□□□ 0.18
CCDC88B-208ENST00000492980 CFHR3Q02985 330 aa16.19■□□□□ 0.18
CCDC88B-208ENST00000492980 LOXL1Q08397 574 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-208ENST00000492980 NRN1Q9NPD7 142 aa16.19■□□□□ 0.18
CCDC88B-208ENST00000492980 RBAKDNA6NC62 111 aa16.18■□□□□ 0.18
CCDC88B-208ENST00000492980 NDUFA4O00483 81 aa16.18■□□□□ 0.18
CCDC88B-208ENST00000492980 IGHV4-59P01825 116 aa16.18■□□□□ 0.18
CCDC88B-208ENST00000492980 ZNF80P51504 273 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-208ENST00000492980 ERCC8Q13216 396 aa16.18■□□□□ 0.18
CCDC88B-208ENST00000492980 RIGQ13278 110 aa16.18■□□□□ 0.18
CCDC88B-208ENST00000492980 UNQ9165/PRO28630Q6UXU0 137 aa16.18■□□□□ 0.18
CCDC88B-208ENST00000492980 C8orf86Q6ZUL3 223 aa16.18■□□□□ 0.18
CCDC88B-208ENST00000492980 LOC102724200A0A096LPH7 203 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-208ENST00000492980 RNF223E7ERA6 249 aa16.18■□□□□ 0.18
CCDC88B-208ENST00000492980 IGHV3-11P01762 117 aa16.18■□□□□ 0.18
CCDC88B-208ENST00000492980 GATD1Q8NB37 220 aa16.18■□□□□ 0.18
CCDC88B-208ENST00000492980 GLMPQ8WWB7 406 aa16.18■□□□□ 0.18
CCDC88B-208ENST00000492980 TMSB15BA0A087X1C1 80 aa16.16■□□□□ 0.18
CCDC88B-208ENST00000492980 DDTP30046 118 aa16.16■□□□□ 0.18
CCDC88B-208ENST00000492980 LCNL1Q6ZST4 164 aa16.16■□□□□ 0.18
CCDC88B-208ENST00000492980 NIT1Q86X76 327 aa16.16■□□□□ 0.18
CCDC88B-208ENST00000492980 FAM19A2Q8N3H0 131 aa16.16■□□□□ 0.18
CCDC88B-208ENST00000492980 MRPL53Q96EL3 112 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-208ENST00000492980 NDFIP1Q9BT67 221 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms