RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 OR11H2Q8NH07 326 aa13.53□□□□□ -0.24
PTCD3-217ENST00000488801 RARRES2Q99969 163 aa13.53□□□□□ -0.24
PTCD3-217ENST00000488801 ARPC5LQ9BPX5 153 aa13.53□□□□□ -0.24
PTCD3-217ENST00000488801 XCL2Q9UBD3 114 aa13.53□□□□□ -0.24
PTCD3-217ENST00000488801 PRELID1Q9Y255 219 aa13.53□□□□□ -0.24
PTCD3-217ENST00000488801 A0A0D9SG52 128 aa13.52□□□□□ -0.25
PTCD3-217ENST00000488801 M0R3E3 92 aa13.52□□□□□ -0.25
PTCD3-217ENST00000488801 EIF3GO75821 320 aaKnown RBP eCLIP13.52□□□□□ -0.25
PTCD3-217ENST00000488801 MBP02144 154 aa13.52□□□□□ -0.25
PTCD3-217ENST00000488801 STAG3L2P0CL84 134 aa13.52□□□□□ -0.25
PTCD3-217ENST00000488801 STAG3L3P0CL85 134 aa13.52□□□□□ -0.25
PTCD3-217ENST00000488801 CDC34P49427 236 aaPredicted RBP13.52□□□□□ -0.25
PTCD3-217ENST00000488801 UBE2L3P68036 154 aaKnown RBP13.52□□□□□ -0.25
PTCD3-217ENST00000488801 FAM122CQ6P4D5 195 aa13.52□□□□□ -0.25
PTCD3-217ENST00000488801 Q8NAQ8 132 aa13.52□□□□□ -0.25
PTCD3-217ENST00000488801 MUC7Q8TAX7 377 aa13.52□□□□□ -0.25
PTCD3-217ENST00000488801 BLNKQ8WV28 456 aa13.52□□□□□ -0.25
PTCD3-217ENST00000488801 A0A0J9YWU9 116 aa13.51□□□□□ -0.25
PTCD3-217ENST00000488801 CRXO43186 299 aaPredicted RBP13.51□□□□□ -0.25
PTCD3-217ENST00000488801 BCL2L11O43521 198 aa13.51□□□□□ -0.25
PTCD3-217ENST00000488801 HIST1H1AQ02539 215 aaPredicted RBP13.51□□□□□ -0.25
PTCD3-217ENST00000488801 EXOC3-AS1Q8N2X6 119 aa13.51□□□□□ -0.25
PTCD3-217ENST00000488801 SUN5Q8TC36 379 aa13.51□□□□□ -0.25
PTCD3-217ENST00000488801 A0A1W2PPV4 95 aa13.5□□□□□ -0.25
PTCD3-217ENST00000488801 NPIPB6E9PJ23 425 aa13.5□□□□□ -0.25
PTCD3-217ENST00000488801 BOLA2-SMG1P6H3BVE0 249 aa13.5□□□□□ -0.25
PTCD3-217ENST00000488801 C1QBP02746 253 aa13.5□□□□□ -0.25
PTCD3-217ENST00000488801 PRB4P10163 310 aaPredicted RBP13.5□□□□□ -0.25
PTCD3-217ENST00000488801 FXYD7P58549 80 aa13.5□□□□□ -0.25
PTCD3-217ENST00000488801 SSX7Q7RTT5 188 aa13.5□□□□□ -0.25
PTCD3-217ENST00000488801 LYPD1Q8N2G4 141 aa13.5□□□□□ -0.25
PTCD3-217ENST00000488801 RAB24Q969Q5 203 aa13.5□□□□□ -0.25
PTCD3-217ENST00000488801 NEU1Q99519 415 aa13.5□□□□□ -0.25
PTCD3-217ENST00000488801 TENM2Q9NT68 2774 aa13.5□□□□□ -0.25
PTCD3-217ENST00000488801 AMBPP02760 352 aa13.49□□□□□ -0.25
PTCD3-217ENST00000488801 ARL14EPLP0DKL9 152 aa13.49□□□□□ -0.25
PTCD3-217ENST00000488801 ZNF726P1Q15940 193 aa13.49□□□□□ -0.25
PTCD3-217ENST00000488801 C1orf158Q8N1D5 194 aa13.49□□□□□ -0.25
PTCD3-217ENST00000488801 IGF2BP2-AS1Q96M15 143 aa13.49□□□□□ -0.25
PTCD3-217ENST00000488801 ODF3Q96PU9 254 aa13.49□□□□□ -0.25
PTCD3-217ENST00000488801 AAMDCQ9H7C9 122 aa13.49□□□□□ -0.25
PTCD3-217ENST00000488801 DYNC2H1Q8NCM8 4307 aaKnown RBP13.49□□□□□ -0.25
PTCD3-217ENST00000488801 hCG_2014768A0A024R1R8 64 aa13.48□□□□□ -0.25
PTCD3-217ENST00000488801 A0A1B0GVG6 124 aa13.48□□□□□ -0.25
PTCD3-217ENST00000488801 C3orf84H3BNL1 204 aa13.48□□□□□ -0.25
PTCD3-217ENST00000488801 M0R2Z0 102 aa13.48□□□□□ -0.25
PTCD3-217ENST00000488801 MIFP14174 115 aa13.48□□□□□ -0.25
PTCD3-217ENST00000488801 ICAM4Q14773 271 aa13.48□□□□□ -0.25
PTCD3-217ENST00000488801 SPINK13Q1W4C9 94 aa13.48□□□□□ -0.25
PTCD3-217ENST00000488801 TMUB2Q71RG4 321 aa13.48□□□□□ -0.25
PTCD3-217ENST00000488801 AKAP14Q86UN6 197 aa13.48□□□□□ -0.25
PTCD3-217ENST00000488801 HMGB3O15347 200 aaKnown RBP13.47□□□□□ -0.25
PTCD3-217ENST00000488801 CD300CQ08708 224 aa13.47□□□□□ -0.25
PTCD3-217ENST00000488801 OR10J6PQ8NGY7 276 aa13.47□□□□□ -0.25
PTCD3-217ENST00000488801 STOML3Q8TAV4 291 aa13.47□□□□□ -0.25
PTCD3-217ENST00000488801 FAM19A4Q96LR4 140 aa13.47□□□□□ -0.25
PTCD3-217ENST00000488801 Q9H3A6 140 aa13.47□□□□□ -0.25
PTCD3-217ENST00000488801 PLA2G2EQ9NZK7 142 aa13.47□□□□□ -0.25
PTCD3-217ENST00000488801 IGHV4-28A0A0C4DH34 117 aa13.46□□□□□ -0.25
PTCD3-217ENST00000488801 CTXND1A0A1B0GTU2 59 aa13.46□□□□□ -0.25
PTCD3-217ENST00000488801 KANTRA0A1W2PQU2 76 aa13.46□□□□□ -0.25
PTCD3-217ENST00000488801 RBMY1A1P0DJD3 496 aaKnown RBP13.46□□□□□ -0.25
PTCD3-217ENST00000488801 RBMY1CP0DJD4 496 aa13.46□□□□□ -0.25
PTCD3-217ENST00000488801 RBMY1FQ15415 496 aaKnown RBP13.46□□□□□ -0.25
PTCD3-217ENST00000488801 LGALSLQ3ZCW2 172 aaPredicted RBP13.46□□□□□ -0.25
PTCD3-217ENST00000488801 C9orf47Q6ZRZ4 202 aa13.46□□□□□ -0.25
PTCD3-217ENST00000488801 IL17DQ8TAD2 202 aa13.46□□□□□ -0.25
PTCD3-217ENST00000488801 ACTR3CQ9C0K3 210 aaPredicted RBP13.46□□□□□ -0.25
PTCD3-217ENST00000488801 SEC11BP0C7V7 166 aa13.45□□□□□ -0.26
PTCD3-217ENST00000488801 CT45A10P0DMU9 189 aa13.45□□□□□ -0.26
PTCD3-217ENST00000488801 GCHFRP30047 84 aa13.45□□□□□ -0.26
PTCD3-217ENST00000488801 CDKN1BP46527 198 aa13.45□□□□□ -0.26
PTCD3-217ENST00000488801 BAP18Q8IXM2 172 aa13.45□□□□□ -0.26
PTCD3-217ENST00000488801 HYLS1Q96M11 299 aa13.45□□□□□ -0.26
PTCD3-217ENST00000488801 ZNF471Q9BX82 626 aaPredicted RBP13.45□□□□□ -0.26
PTCD3-217ENST00000488801 OTORQ9NRC9 128 aa13.45□□□□□ -0.26
PTCD3-217ENST00000488801 RBAKDNA6NC62 111 aa13.44□□□□□ -0.26
PTCD3-217ENST00000488801 INSP01308 110 aa13.44□□□□□ -0.26
PTCD3-217ENST00000488801 RANP62826 216 aaKnown RBP13.44□□□□□ -0.26
PTCD3-217ENST00000488801 AKR1C8PQ5T2L2 129 aa13.44□□□□□ -0.26
PTCD3-217ENST00000488801 CASC10Q5T4H9 136 aa13.44□□□□□ -0.26
PTCD3-217ENST00000488801 ARL6IP6Q8N6S5 226 aa13.44□□□□□ -0.26
PTCD3-217ENST00000488801 LYSTQ99698 3801 aa13.44□□□□□ -0.26
PTCD3-217ENST00000488801 IGKV2-40A0A087WW87 121 aaPredicted RBP13.43□□□□□ -0.26
PTCD3-217ENST00000488801 SMIM9A6NGZ8 99 aa13.43□□□□□ -0.26
PTCD3-217ENST00000488801 CXorf1O96002 111 aa13.43□□□□□ -0.26
PTCD3-217ENST00000488801 IGKV2D-40P01614 121 aaPredicted RBP13.43□□□□□ -0.26
PTCD3-217ENST00000488801 SLC25A5P05141 298 aaKnown RBP13.43□□□□□ -0.26
PTCD3-217ENST00000488801 KIR3DS1Q14943 382 aa13.43□□□□□ -0.26
PTCD3-217ENST00000488801 AGPAT4-IT1Q9H0P7 198 aa13.43□□□□□ -0.26
PTCD3-217ENST00000488801 GOLT1BQ9Y3E0 138 aa13.43□□□□□ -0.26
PTCD3-217ENST00000488801 TRAV12-2A0A075B6T6 113 aa13.42□□□□□ -0.26
PTCD3-217ENST00000488801 LINC00477Q96M19 166 aa13.42□□□□□ -0.26
PTCD3-217ENST00000488801 VGLL1Q99990 258 aa13.42□□□□□ -0.26
PTCD3-217ENST00000488801 C20orf144Q9BQM9 153 aa13.42□□□□□ -0.26
PTCD3-217ENST00000488801 KMT2CQ8NEZ4 4911 aaKnown RBP13.41□□□□□ -0.26
PTCD3-217ENST00000488801 KLLNB2CW77 178 aa13.41□□□□□ -0.26
PTCD3-217ENST00000488801 DIRC3C9JPN6 131 aa13.41□□□□□ -0.26
PTCD3-217ENST00000488801 DEFB4AO15263 64 aa13.41□□□□□ -0.26
PTCD3-217ENST00000488801 PFDN1O60925 122 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms