RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 FAM24BQ8N5W8 94 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 FXYD5Q96DB9 178 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 SAT2Q96F10 170 aaPredicted RBP6.11□□□□□ -1.43
SF3A1-208ENST00000485618 PHYHIPLQ96FC7 376 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 FAM167A-AS1Q96KT0 104 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 RCHY1Q96PM5 261 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 ASCL2Q99929 193 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 WFDC10AQ9H1F0 79 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 ZNF586Q9NXT0 402 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 U3KQK5 164 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 TRAV8-2A0A0B4J237 113 aa6.1□□□□□ -1.43
SF3A1-208ENST00000485618 A0A0J9YX75 114 aa6.1□□□□□ -1.43
SF3A1-208ENST00000485618 A0A1B0GVG6 124 aa6.1□□□□□ -1.43
SF3A1-208ENST00000485618 SERTM2A0A1B0GWG4 89 aa6.1□□□□□ -1.43
SF3A1-208ENST00000485618 SPRY2O43597 315 aa6.1□□□□□ -1.43
SF3A1-208ENST00000485618 CA1P00915 261 aaPredicted RBP6.1□□□□□ -1.43
SF3A1-208ENST00000485618 ARL14EPLP0DKL9 152 aa6.1□□□□□ -1.43
SF3A1-208ENST00000485618 GCHFRP30047 84 aa6.1□□□□□ -1.43
SF3A1-208ENST00000485618 HIST1H1AQ02539 215 aaPredicted RBP6.1□□□□□ -1.43
SF3A1-208ENST00000485618 TMEM78Q5T7P6 136 aa6.1□□□□□ -1.43
SF3A1-208ENST00000485618 TRPT1Q86TN4 253 aaKnown RBP6.1□□□□□ -1.43
SF3A1-208ENST00000485618 RNF182Q8N6D2 247 aa6.1□□□□□ -1.43
SF3A1-208ENST00000485618 OR8A1Q8NGG7 326 aa6.1□□□□□ -1.43
SF3A1-208ENST00000485618 TMED6Q8WW62 240 aa6.1□□□□□ -1.43
SF3A1-208ENST00000485618 LINC00477Q96M19 166 aa6.1□□□□□ -1.43
SF3A1-208ENST00000485618 C17orf77Q96MU5 243 aa6.1□□□□□ -1.43
SF3A1-208ENST00000485618 TM2D3Q9BRN9 247 aa6.1□□□□□ -1.43
SF3A1-208ENST00000485618 OTORQ9NRC9 128 aa6.1□□□□□ -1.43
SF3A1-208ENST00000485618 MAP1LC3B2A6NCE7 125 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 FBLL1A6NHQ2 334 aaKnown RBP6.09□□□□□ -1.43
SF3A1-208ENST00000485618 F6UZH7 168 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 H3BTX0 84 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 HBE1P02100 147 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 SNRPCP09234 159 aaKnown RBP6.09□□□□□ -1.43
SF3A1-208ENST00000485618 LEPP41159 167 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 ICAM4Q14773 271 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 C9orf62Q8N4C0 152 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 FAM213BQ8TBF2 198 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 SFT2D1Q8WV19 159 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 C20orf173Q96LM9 149 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 CITED4Q96RK1 184 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 TCEAL7Q9BRU2 100 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 TMEM208Q9BTX3 173 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 MAP1LC3BQ9GZQ8 125 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 GOLT1BQ9Y3E0 138 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 PCLOQ9Y6V0 5065 aa6.09□□□□□ -1.43
SF3A1-208ENST00000485618 DNAH9Q9NYC9 4486 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 A0A1W2PRE2 83 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 RBAKDNA6NC62 111 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 PGPA6NDG6 321 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 HMGB3O15347 200 aaKnown RBP6.08□□□□□ -1.44
SF3A1-208ENST00000485618 NDUFB4O95168 129 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 IGKV3-20P01619 116 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 SLC25A5P05141 298 aaKnown RBP6.08□□□□□ -1.44
SF3A1-208ENST00000485618 NMBP08949 121 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 H2AFB1P0C5Y9 115 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 CNN1P51911 297 aaKnown RBP6.08□□□□□ -1.44
SF3A1-208ENST00000485618 ZNF124Q15973 351 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 IGFL4Q6B9Z1 124 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 TMEM256Q8N2U0 113 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 IL17DQ8TAD2 202 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 SUN5Q8TC36 379 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 RNF183Q96D59 192 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 ODF3Q96PU9 254 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 Q9H3A6 140 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 RFNGQ9Y644 331 aa6.08□□□□□ -1.44
SF3A1-208ENST00000485618 COL7A1Q02388 2944 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 TRBV7-9A0A0J9YWB2 115 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 SMIM9A6NGZ8 99 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 ZNF705FA8MVS1 300 aaPredicted RBP6.07□□□□□ -1.44
SF3A1-208ENST00000485618 F6UB75 175 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 C3orf84H3BNL1 204 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 BOLA2-SMG1P6H3BVE0 249 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 SLC17A3O00476 420 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 INSP01308 110 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 IFNA1P01562 189 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 IFNA7P01567 189 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 TAGLN2P37802 199 aaKnown RBP6.07□□□□□ -1.44
SF3A1-208ENST00000485618 CDKN1BP46527 198 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 SULT1A2P50226 295 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 BLOC1S1P78537 153 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 DEFB135Q30KP9 77 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 EXOC3-AS1Q8N2X6 119 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 C5orf17Q8NAS9 161 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 MBD3L1Q8WWY6 194 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 IGF2BP2-AS1Q96M15 143 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 RARRES2Q99969 163 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 C20orf144Q9BQM9 153 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 XCL2Q9UBD3 114 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 ARL2-SNX15V9GYD0 113 aa6.07□□□□□ -1.44
SF3A1-208ENST00000485618 TRAV1-1A0A0B4J248 108 aa6.06□□□□□ -1.44
SF3A1-208ENST00000485618 A8MTW9 85 aa6.06□□□□□ -1.44
SF3A1-208ENST00000485618 ZNF705EA8MWA4 302 aaPredicted RBP6.06□□□□□ -1.44
SF3A1-208ENST00000485618 DIRC3C9JPN6 131 aa6.06□□□□□ -1.44
SF3A1-208ENST00000485618 MIFP14174 115 aa6.06□□□□□ -1.44
SF3A1-208ENST00000485618 HLA-DMBP28068 263 aa6.06□□□□□ -1.44
SF3A1-208ENST00000485618 FHITP49789 147 aa6.06□□□□□ -1.44
SF3A1-208ENST00000485618 SUMO1P63165 101 aaKnown RBP6.06□□□□□ -1.44
SF3A1-208ENST00000485618 GDF5OSQ5U4N7 250 aa6.06□□□□□ -1.44
SF3A1-208ENST00000485618 CST9LP1Q5W188 147 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms