RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 GLRXP35754 106 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 SPINK7P58062 85 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 GNG3P63215 75 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 FKBP1CQ5VVH2 108 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 ZCCHC23Q6ZST2 131 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 LYG2Q86SG7 212 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 LRRC18Q8N456 261 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 FAM216BQ8N7L0 139 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 CCL4L1Q8NHW4 92 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 PLEKHB2Q96CS7 222 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 RMND5BQ96G75 393 aaPredicted RBP0.05□□□□□ -2.4
VPS50-216ENST00000484954 LIMD2Q9BT23 127 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 PLAC8Q9NZF1 115 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 ANK2Q01484 3957 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 DOCK4Q8N1I0 1966 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 PEAK1Q9H792 1746 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 CHD3Q12873 2000 aaKnown RBP0.04□□□□□ -2.4
VPS50-216ENST00000484954 COL7A1Q02388 2944 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 ZDBF2Q9HCK1 2354 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 MGAMO43451 1857 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 PLXNA4Q9HCM2 1894 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 NCOR2Q9Y618 2525 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 NUPR2A6NF83 97 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 A6NN06 94 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 IFNA14P01570 189 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 PDE6GP18545 87 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 MRPS15P82914 257 aaKnown RBP0.04□□□□□ -2.4
VPS50-216ENST00000484954 RTL8BQ17RB0 113 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 AP3S1Q92572 193 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 CCL19Q99731 98 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 RTL8AQ9BWD3 113 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 TCEAL2Q9H3H9 227 aaPredicted RBP0.04□□□□□ -2.4
VPS50-216ENST00000484954 LRTM1Q9HBL6 345 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 PHRF1Q9P1Y6 1649 aaKnown RBP0.04□□□□□ -2.4
VPS50-216ENST00000484954 RYR2Q92736 4967 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 HIVEP1P15822 2718 aa0.04□□□□□ -2.4
VPS50-216ENST00000484954 MEGF8Q7Z7M0 2845 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 TMEM238C9JI98 176 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 H7BYZ3 331 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 IGHV3-30P01768 117 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 IFNA4P05014 189 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 IGHV3-30-5P0DP03 117 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 ZNF137PP52743 207 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 CRYBA4P53673 196 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 TAS2R41P59536 307 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 VBP1P61758 197 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 RPL19P84098 196 aaKnown RBP0.03□□□□□ -2.4
VPS50-216ENST00000484954 DIAPH2-AS1Q14236 149 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 POU6F1Q14863 301 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 ASB16-AS1Q495Z4 193 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 OR13C6PQ8NH95 151 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 CDC26Q8NHZ8 85 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 DIRC1Q969H9 104 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 HOPXQ9BPY8 73 aaPredicted RBP0.03□□□□□ -2.4
VPS50-216ENST00000484954 CST11Q9H112 138 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 NIT2Q9NQR4 276 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 NAT8BQ9UHF3 227 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 HSPB8Q9UJY1 196 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 TNCP24821 2201 aa0.03□□□□□ -2.4
VPS50-216ENST00000484954 NSD1Q96L73 2696 aaPredicted RBP0.03□□□□□ -2.4
VPS50-216ENST00000484954 KIAA1109Q2LD37 5005 aa0.03□□□□□ -2.41
VPS50-216ENST00000484954 FRMPD1Q5SYB0 1578 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 OTOGQ6ZRI0 2925 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 CELSR1Q9NYQ6 3014 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 A0A096LPI6 279 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 GPR31O00270 319 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 LYRM1O43325 122 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 APOA2P02652 100 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 CCL4P13236 92 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 SPINT3P49223 89 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 C6orf52Q5T4I8 152 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 Q6ZQY7 126 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 TMED4Q7Z7H5 227 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 PRR15Q8IV56 129 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 PBDC1Q9BVG4 233 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 OR2H1Q9GZK4 316 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 MAP1LC3BQ9GZQ8 125 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 BOLA2Q9H3K6 86 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 NUBP2Q9Y5Y2 271 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 MYH7BA7E2Y1 1941 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 EIF3AQ14152 1382 aaKnown RBP0.02□□□□□ -2.41
VPS50-216ENST00000484954 RTL9Q8NET4 1388 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 BSNQ9UPA5 3926 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 HIVEP3Q5T1R4 2406 aa0.02□□□□□ -2.41
VPS50-216ENST00000484954 STAB2Q8WWQ8 2551 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 KIF1BO60333 1816 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 MYO5AQ9Y4I1 1855 aaKnown RBP0.01□□□□□ -2.41
VPS50-216ENST00000484954 KNTC1P50748 2209 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 KPNA4O00629 521 aaPredicted RBP0.01□□□□□ -2.41
VPS50-216ENST00000484954 PPP1R2P41236 205 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 RPL35P42766 123 aaKnown RBP0.01□□□□□ -2.41
VPS50-216ENST00000484954 BASP1P80723 227 aaKnown RBP0.01□□□□□ -2.41
VPS50-216ENST00000484954 MRPS36P82909 103 aaKnown RBP0.01□□□□□ -2.41
VPS50-216ENST00000484954 VMA21Q3ZAQ7 101 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 LINC00299Q6ZSB3 139 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 Q86TA4 180 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 C10orf111Q8N326 155 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 BORCS8Q96FH0 119 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 NABP2Q9BQ15 211 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 JPT1Q9UK76 154 aa0.01□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms