RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, human

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS50-215	ENST00000480943		L7N2F9	121 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	ISLR	O14498	428 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	TSC22D2	O75157	780 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	DEDD	O75618	318 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	TCRB	P04435	133 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	OR5G3	P0C626	314 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	LINC00869	P0C866	280 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	S100A7	P31151	101 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	MEOX2	P50222	304 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	VAMP2	P63027	116 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	DLK1	P80370	383 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	SLC38A11	Q08AI6	406 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	ZNF846	Q147U1	533 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	FAM78B	Q5VT40	261 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	EBLN2	Q6P2I7	272 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	TMEM14EP	Q6UXP3	125 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	RPP25L	Q8N5L8	163 aa	Known RBP	4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	OR10P1	Q8NGE3	313 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	UHRF2	Q96PU4	802 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	RSG1	Q9BU20	258 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	SLC35B3	Q9H1N7	401 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	HRH4	Q9H3N8	390 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	NPVF	Q9HCQ7	196 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	RPRM	Q9NS64	109 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	NUDT15	Q9NV35	164 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	HIGD1A	Q9Y241	93 aa		4.38	□□□□□ -1.71
VPS50-215	ENST00000480943	NACA	E9PAV3	2078 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	FRAS1	Q86XX4	4008 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	DNAH6	Q9C0G6	4158 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	IGHV4-4	A0A075B6R2	117 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943		A0A0J9YX75	114 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	C7orf66	A4D0T2	115 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	C5orf51	A6NDU8	294 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943		K7EPK0	472 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	HYPM	O75409	117 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	BCAP31	P51572	246 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	EMP1	P54849	157 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	TAS2R30	P59541	319 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	S100A10	P60903	97 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	PSG9	Q00887	426 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	ARL16	Q0P5N6	197 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	SAMD13	Q5VXD3	122 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	LGALS9C	Q6DKI2	356 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	ZNF705A	Q6ZN79	300 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	C12orf45	Q8N5I9	185 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	RNF182	Q8N6D2	247 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	ZNF709	Q8N972	641 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	ZNF431	Q8TF32	576 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	C17orf77	Q96MU5	243 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	GPR82	Q96P67	336 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	SHANK2-AS3	Q9BTD1	123 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	CCDC32	Q9BV29	185 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	ARL6	Q9H0F7	186 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	APLN	Q9ULZ1	77 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	DNAH10	Q8IVF4	4471 aa		4.37	□□□□□ -1.71
VPS50-215	ENST00000480943	KMT2A	Q03164	3969 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	DEFB131B	A0A096LNP1	70 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	TRAV8-2	A0A0B4J237	113 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	FAM240B	A0A1B0GVZ2	78 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	FAM24A	A6NFZ4	105 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	ZNF705F	A8MVS1	300 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	FNDC10	F2Z333	226 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	AGPAT2	O15120	278 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	DUSP14	O95147	198 aa	Known RBP	4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	ZNF705D	P0CH99	300 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	ZNF705B	P0CI00	300 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	PRB4	P10163	310 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	RPL7	P18124	248 aa	Known RBP	4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	CAV2	P51636	162 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	CNN1	P51911	297 aa	Known RBP	4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	PLP1	P60201	277 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	SELENOT	P62341	195 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	C12orf74	Q32Q52	190 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	SPATA31B1P	Q5VZV4	182 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	PATE2	Q6UY27	113 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	ZNF546	Q86UE3	836 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	C1orf158	Q8N1D5	194 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	ZNF738	Q8NE65	137 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	OR11H7	Q8NGC8	314 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	LRRC20	Q8TCA0	184 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	S100Z	Q8WXG8	99 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	MGST2	Q99735	147 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	ARV1	Q9H2C2	271 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	GOLT1B	Q9Y3E0	138 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943	RFNG	Q9Y644	331 aa		4.36	□□□□□ -1.71
VPS50-215	ENST00000480943		A0A087X0K7	114 aa		4.35	□□□□□ -1.71
VPS50-215	ENST00000480943	UBE2L5P	A0A1B0GUS4	154 aa		4.35	□□□□□ -1.71
VPS50-215	ENST00000480943	TMEM189	A5PLL7	270 aa		4.35	□□□□□ -1.71
VPS50-215	ENST00000480943	SMIM9	A6NGZ8	99 aa		4.35	□□□□□ -1.71
VPS50-215	ENST00000480943		A8MTW9	85 aa		4.35	□□□□□ -1.71
VPS50-215	ENST00000480943		M0R2Z0	102 aa		4.35	□□□□□ -1.71
VPS50-215	ENST00000480943	GOSR2	O14653	212 aa		4.35	□□□□□ -1.71
VPS50-215	ENST00000480943	COX7A2P2	O60397	106 aa		4.35	□□□□□ -1.71
VPS50-215	ENST00000480943	CST7	O76096	145 aa		4.35	□□□□□ -1.71
VPS50-215	ENST00000480943	INS	P01308	110 aa		4.35	□□□□□ -1.71
VPS50-215	ENST00000480943	HBE1	P02100	147 aa		4.35	□□□□□ -1.71
VPS50-215	ENST00000480943	SNRPC	P09234	159 aa	Known RBP	4.35	□□□□□ -1.71
VPS50-215	ENST00000480943	PVALB	P20472	110 aa	Predicted RBP	4.35	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms