RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 VAMP8Q9BV40 100 aa6.29□□□□□ -1.4
USP54-212ENST00000480210 PARD6GQ9BYG4 376 aaPredicted RBP6.29□□□□□ -1.4
USP54-212ENST00000480210 SDF2L1Q9HCN8 221 aa6.29□□□□□ -1.4
USP54-212ENST00000480210 KCNIP2Q9NS61 270 aa6.29□□□□□ -1.4
USP54-212ENST00000480210 MRPL36Q9P0J6 103 aaKnown RBP6.29□□□□□ -1.4
USP54-212ENST00000480210 UQCR10Q9UDW1 63 aa6.29□□□□□ -1.4
USP54-212ENST00000480210 IGKV1D-37A0A075B6S9 117 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 TGIF2-C20orf24A0A0A6YYL0 155 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 LOC102723971A0A1B0GUV8 181 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 WI2-2373I1.2A0A1W2PRP0 233 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 C17orf112F2Z3M2 114 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 H7BYZ3 331 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 IFNA5P01569 189 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 IGLV1-51P01701 117 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 SNRPCP09234 159 aaKnown RBP6.28□□□□□ -1.4
USP54-212ENST00000480210 PSG1P11464 419 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 SCGB1A1P11684 91 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 IGLL1P15814 213 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 CRYBB3P26998 211 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 RPL29P47914 159 aaKnown RBP6.28□□□□□ -1.4
USP54-212ENST00000480210 FHITP49789 147 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 RBX1P62877 108 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 ARL16Q0P5N6 197 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 ICAM4Q14773 271 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 LCN12Q6JVE5 192 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 TEX43Q6ZNM6 134 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 CYP2G1PQ6ZSU1 146 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 HAPLN4Q86UW8 402 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 MTURNQ8N3F0 131 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 TMEM217Q8N7C4 229 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 OR5C1Q8NGR4 320 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 DYNLRB2Q8TF09 96 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 MBD3L1Q8WWY6 194 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 RNF125Q96EQ8 232 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 ZFAND3Q9H8U3 227 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 DNAJC4Q9NNZ3 241 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 AURKAIP1Q9NWT8 199 aaPredicted RBP6.28□□□□□ -1.4
USP54-212ENST00000480210 SMPXQ9UHP9 88 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 RABAC1Q9UI14 185 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 WDR83OSQ9Y284 106 aa6.28□□□□□ -1.4
USP54-212ENST00000480210 MRPS16Q9Y3D3 137 aaKnown RBP6.28□□□□□ -1.4
USP54-212ENST00000480210 LSM4Q9Y4Z0 139 aaKnown RBP6.28□□□□□ -1.4
USP54-212ENST00000480210 IGKV1OR2-108A0A075B7D4 117 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 IGHV7-4-1A0A0J9YVY3 117 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 TMEM213A2RRL7 107 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 ZNF705FA8MVS1 300 aaPredicted RBP6.27□□□□□ -1.41
USP54-212ENST00000480210 IL4P05112 153 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 PFN1P07737 140 aaKnown RBP6.27□□□□□ -1.41
USP54-212ENST00000480210 NPSP0C0P6 89 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 ZNF705DP0CH99 300 aaPredicted RBP6.27□□□□□ -1.41
USP54-212ENST00000480210 ZNF705BP0CI00 300 aaPredicted RBP6.27□□□□□ -1.41
USP54-212ENST00000480210 CMC4P56277 68 aaPredicted RBP6.27□□□□□ -1.41
USP54-212ENST00000480210 EGFEM1PQ0D2K5 195 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 DEFB114Q30KQ6 69 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 TM4SF20Q53R12 229 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 ACTL10Q5JWF8 245 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 KPRPQ5T749 579 aaPredicted RBP6.27□□□□□ -1.41
USP54-212ENST00000480210 UNQ9165/PRO28630Q6UXU0 137 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 LINC01551Q86U37 167 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 ZNF709Q8N972 641 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 SCGB1C1Q8TD33 95 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 RNF2Q99496 336 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 ATP5SQ99766 215 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 VSIRQ9H7M9 311 aa6.27□□□□□ -1.41
USP54-212ENST00000480210 TRAV2A0A0B4J234 112 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 IGHV3-35A0A0C4DH35 117 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 ZNF727A8MUV8 499 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 CHEK1O14757 476 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 HYPMO75409 117 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 BCL2P10415 239 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 ZNF90Q03938 601 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 PMCHL1Q16048 86 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 OXLD1Q5BKU9 147 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 PDZD11Q5EBL8 140 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 FAM162BQ5T6X4 162 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 TMEM182Q6ZP80 229 aaPredicted RBP6.26□□□□□ -1.41
USP54-212ENST00000480210 RBPMS2Q6ZRY4 209 aaKnown RBP6.26□□□□□ -1.41
USP54-212ENST00000480210 OR4C5Q8NGB2 326 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 OR1L4Q8NGR5 311 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 GPR82Q96P67 336 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 ATG101Q9BSB4 218 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 RHPN1-AS1Q9BWJ2 59 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 WDR61Q9GZS3 305 aaKnown RBP6.26□□□□□ -1.41
USP54-212ENST00000480210 MANBALQ9NQG1 85 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 U3KQE9 123 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 CMYA5Q8N3K9 4069 aa6.26□□□□□ -1.41
USP54-212ENST00000480210 DNHD1Q96M86 4753 aa6.25□□□□□ -1.41
USP54-212ENST00000480210 HELTA6NFD8 242 aa6.25□□□□□ -1.41
USP54-212ENST00000480210 MT-ND6P03923 174 aa6.25□□□□□ -1.41
USP54-212ENST00000480210 GALR1P47211 349 aa6.25□□□□□ -1.41
USP54-212ENST00000480210 PSMB3P49720 205 aa6.25□□□□□ -1.41
USP54-212ENST00000480210 SUMO1P63165 101 aaKnown RBP6.25□□□□□ -1.41
USP54-212ENST00000480210 BEAN1Q3B7T3 259 aa6.25□□□□□ -1.41
USP54-212ENST00000480210 GFI1BQ5VTD9 330 aa6.25□□□□□ -1.41
USP54-212ENST00000480210 SAMD13Q5VXD3 122 aa6.25□□□□□ -1.41
USP54-212ENST00000480210 CYB561D1Q8N8Q1 229 aa6.25□□□□□ -1.41
USP54-212ENST00000480210 GATAD1Q8WUU5 269 aa6.25□□□□□ -1.41
USP54-212ENST00000480210 ZNF414Q96IQ9 312 aa6.25□□□□□ -1.41
USP54-212ENST00000480210 SPAG8Q99932 426 aaPredicted RBP6.25□□□□□ -1.41
USP54-212ENST00000480210 ALKBH7Q9BT30 221 aaPredicted RBP6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms