RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 LINC00614P0C842 121 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 TSPOP30536 169 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 TPTE2P1Q5T6R2 138 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 C1orf174Q8IYL3 243 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 ZNF843Q8N446 348 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 RNASE8Q8TDE3 154 aaKnown RBP3.99□□□□□ -1.77
CCDC39-204ENST00000476379 PRELID3AQ96N28 172 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 NDFIP1Q9BT67 221 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 SLC25A2Q9BXI2 301 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 NHP2Q9NX24 153 aaKnown RBP3.99□□□□□ -1.77
CCDC39-204ENST00000476379 FBN1P35555 2871 aaKnown RBP3.99□□□□□ -1.77
CCDC39-204ENST00000476379 F2RL2O00254 374 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 APOMO95445 188 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 HLA-DRB1P01911 266 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 SCGB1C2P0DMR2 95 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 CX3CL1P78423 397 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 LYZL1Q6UWQ5 148 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 ZNF418Q8TF45 676 aaPredicted RBP3.99□□□□□ -1.77
CCDC39-204ENST00000476379 AGRNO00468 2067 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 TCRBV4S1A1TA0A5B7 111 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 HIST1H1AQ02539 215 aaPredicted RBP3.99□□□□□ -1.77
CCDC39-204ENST00000476379 SRSF9Q13242 221 aaKnown RBP eCLIP3.99□□□□□ -1.77
CCDC39-204ENST00000476379 GUSBP1Q15486 140 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 C16orf92Q96LL3 132 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 SLC25A39Q9BZJ4 359 aaPredicted RBP3.99□□□□□ -1.77
CCDC39-204ENST00000476379 TP53TG3Q9ULZ0 132 aa3.99□□□□□ -1.77
CCDC39-204ENST00000476379 IGHV2-26A0A0B4J1V2 119 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 A0A1B0GUT8 65 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 RIGQ13278 110 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 TMEM242Q9NWH2 141 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 KMT2BQ9UMN6 2715 aaPredicted RBP3.98□□□□□ -1.77
CCDC39-204ENST00000476379 A0A1B0GW64 132 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 A0A1W2PPR1 153 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 MT-ND6P03923 174 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 IGHV1-8P0DP01 117 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 LGALS7P47929 136 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 MFAP4P55083 255 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 ADORA2A-AS1P86434 159 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 AMTNQ6UX39 209 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 RNF125Q96EQ8 232 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 C2orf88Q9BSF0 95 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 PSG8Q9UQ74 426 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 ZNF256Q9Y2P7 627 aaPredicted RBP3.98□□□□□ -1.77
CCDC39-204ENST00000476379 IGLV3-9A0A075B6K5 115 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 E7EQL1 145 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 LOXL1Q08397 574 aaPredicted RBP3.98□□□□□ -1.77
CCDC39-204ENST00000476379 NRN1LQ496H8 165 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 PATE2Q6UY27 113 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 C1orf122Q6ZSJ8 110 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 RNF138Q8WVD3 245 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 ZNF503Q96F45 646 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 GRAMD2BQ96HH9 432 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 LINC00312Q9Y6C7 94 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 PDZD2O15018 2839 aa3.98□□□□□ -1.77
CCDC39-204ENST00000476379 C22orf46C9J442 243 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 F6UB75 175 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 CCL25O15444 150 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 IGLC2P0DOY2 106 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 IGLC3P0DOY3 106 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 LEPP41159 167 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 GDF5OSQ5U4N7 250 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 OSR1Q8TAX0 266 aaPredicted RBP3.97□□□□□ -1.77
CCDC39-204ENST00000476379 RAB1CQ92928 201 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 ZNF414Q96IQ9 312 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 YAE1D1Q9NRH1 226 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 PLSCR4Q9NRQ2 329 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 TRAV9-2A0A087WT02 112 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 IGHV1-3A0A0C4DH29 117 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 M0QZK8 103 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 SAP30O75446 220 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 HOXB1P14653 301 aaPredicted RBP3.97□□□□□ -1.77
CCDC39-204ENST00000476379 ZNF672Q499Z4 452 aaPredicted RBP3.97□□□□□ -1.77
CCDC39-204ENST00000476379 RBPMS2Q6ZRY4 209 aaKnown RBP3.97□□□□□ -1.77
CCDC39-204ENST00000476379 SRSF8Q9BRL6 282 aaKnown RBP3.97□□□□□ -1.77
CCDC39-204ENST00000476379 TMEM14BQ9NUH8 114 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 TMEM178BH3BS89 294 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 PRSS2P07478 247 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 PLP1P60201 277 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 SMAGPQ0VAQ4 97 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 TMEM249Q2WGJ8 235 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 CLEC2AQ6UVW9 174 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 FAM57AQ8TBR7 257 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 WIPF2Q8TF74 440 aaPredicted RBP3.97□□□□□ -1.77
CCDC39-204ENST00000476379 VKORC1Q9BQB6 163 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 C21orf62Q9NYP8 219 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 HSPB8Q9UJY1 196 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 LOC105371242A0A075B767 164 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 IGHV1-24A0A0C4DH33 117 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 PSMB11A5LHX3 300 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 J3QR89 54 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 EFNA4P52798 201 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 C15orf32Q32M92 178 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 SLC25A48Q6ZT89 311 aaKnown RBP3.97□□□□□ -1.77
CCDC39-204ENST00000476379 IL17RELQ6ZVW7 336 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 PCP2Q8IVA1 136 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 OR10AG1Q8NH19 301 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 YPEL4Q96NS1 127 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 HIST1H4GQ99525 98 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 VGLL1Q99990 258 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 GNB1LQ9BYB4 327 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms