RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 ISOC2Q96AB3 205 aa8.97□□□□□ -0.97
USP54-209ENST00000464635 GNB4Q9HAV0 340 aa8.97□□□□□ -0.97
USP54-209ENST00000464635 DAZ1Q9NQZ3 744 aaKnown RBP8.97□□□□□ -0.97
USP54-209ENST00000464635 UFC1Q9Y3C8 167 aa8.97□□□□□ -0.97
USP54-209ENST00000464635 TRBV20OR9-2A0A075B6H5 130 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 TRAV9-1A0A075B6T8 112 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 RBAKDNA6NC62 111 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 A8MWP6 167 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 K7EIL1 84 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 ISLRO14498 428 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 GCGP01275 180 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 SLC25A5P05141 298 aaKnown RBP8.96□□□□□ -0.98
USP54-209ENST00000464635 ATF4P18848 351 aaPredicted RBP8.96□□□□□ -0.98
USP54-209ENST00000464635 HOXD3P31249 432 aaPredicted RBP8.96□□□□□ -0.98
USP54-209ENST00000464635 GNG4P50150 75 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 KRTAP10-11P60412 298 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 LEMD1Q68G75 181 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 LCNL1Q6ZST4 164 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 C8orf86Q6ZUL3 223 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 FAM231DQ6ZW35 169 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 COX8CQ7Z4L0 72 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 TMEM75Q8N9X5 138 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 OCC1Q8TAD7 63 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 BLNKQ8WV28 456 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 GLMPQ8WWB7 406 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 IGF2BP2-AS1Q96M15 143 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 PPP1R14DQ9NXH3 145 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 ZFP30Q9Y2G7 519 aa8.96□□□□□ -0.98
USP54-209ENST00000464635 COLCA2A8K830 154 aa8.95□□□□□ -0.98
USP54-209ENST00000464635 ZNF785A8K8V0 405 aa8.95□□□□□ -0.98
USP54-209ENST00000464635 PPP5D1E7EU14 171 aa8.95□□□□□ -0.98
USP54-209ENST00000464635 FOLR2P14207 255 aa8.95□□□□□ -0.98
USP54-209ENST00000464635 CSN1S1P47710 185 aa8.95□□□□□ -0.98
USP54-209ENST00000464635 ADIRFQ15847 76 aa8.95□□□□□ -0.98
USP54-209ENST00000464635 KLHL30-AS1Q8NEE0 82 aa8.95□□□□□ -0.98
USP54-209ENST00000464635 YPEL4Q96NS1 127 aa8.95□□□□□ -0.98
USP54-209ENST00000464635 DUX3Q96PT4 197 aa8.95□□□□□ -0.98
USP54-209ENST00000464635 DERL1Q9BUN8 251 aa8.95□□□□□ -0.98
USP54-209ENST00000464635 MLST8Q9BVC4 326 aa8.95□□□□□ -0.98
USP54-209ENST00000464635 ZNF331Q9NQX6 463 aaPredicted RBP8.95□□□□□ -0.98
USP54-209ENST00000464635 OSTCQ9NRP0 149 aa8.95□□□□□ -0.98
USP54-209ENST00000464635 SMAD5-AS1Q9Y6J3 95 aa8.95□□□□□ -0.98
USP54-209ENST00000464635 COL7A1Q02388 2944 aa8.95□□□□□ -0.98
USP54-209ENST00000464635 TRBV24-1A0A075B6N3 115 aa8.94□□□□□ -0.98
USP54-209ENST00000464635 IGHV7-4-1A0A0J9YVY3 117 aa8.94□□□□□ -0.98
USP54-209ENST00000464635 DIRC3C9JPN6 131 aa8.94□□□□□ -0.98
USP54-209ENST00000464635 LTAP01374 205 aa8.94□□□□□ -0.98
USP54-209ENST00000464635 IGLV2-8P01709 118 aa8.94□□□□□ -0.98
USP54-209ENST00000464635 RPLP1P05386 114 aaKnown RBP8.94□□□□□ -0.98
USP54-209ENST00000464635 UBE2G1P62253 170 aa8.94□□□□□ -0.98
USP54-209ENST00000464635 BAGE2Q86Y30 109 aa8.94□□□□□ -0.98
USP54-209ENST00000464635 C4orf3Q8WVX3 66 aa8.94□□□□□ -0.98
USP54-209ENST00000464635 SFRP2Q96HF1 295 aa8.94□□□□□ -0.98
USP54-209ENST00000464635 PYGO2Q9BRQ0 406 aa8.94□□□□□ -0.98
USP54-209ENST00000464635 C20orf24Q9BUV8 137 aa8.94□□□□□ -0.98
USP54-209ENST00000464635 SMPXQ9UHP9 88 aa8.94□□□□□ -0.98
USP54-209ENST00000464635 H7BYZ3 331 aa8.93□□□□□ -0.98
USP54-209ENST00000464635 TRBV12-3P01733 135 aa8.93□□□□□ -0.98
USP54-209ENST00000464635 IGHV3-11P01762 117 aa8.93□□□□□ -0.98
USP54-209ENST00000464635 PFN1P07737 140 aaKnown RBP8.93□□□□□ -0.98
USP54-209ENST00000464635 RPEL1Q2QD12 228 aa8.93□□□□□ -0.98
USP54-209ENST00000464635 CENPWQ5EE01 88 aa8.93□□□□□ -0.98
USP54-209ENST00000464635 TMEM183AQ8IXX5 376 aa8.93□□□□□ -0.98
USP54-209ENST00000464635 C17orf77Q96MU5 243 aa8.93□□□□□ -0.98
USP54-209ENST00000464635 MLXQ9UH92 298 aa8.93□□□□□ -0.98
USP54-209ENST00000464635 DNAH9Q9NYC9 4486 aa8.92□□□□□ -0.98
USP54-209ENST00000464635 S100PP25815 95 aa8.92□□□□□ -0.98
USP54-209ENST00000464635 EGFEM1PQ0D2K5 195 aa8.92□□□□□ -0.98
USP54-209ENST00000464635 KLF5Q13887 457 aaPredicted RBP8.92□□□□□ -0.98
USP54-209ENST00000464635 ELOBQ15370 118 aa8.92□□□□□ -0.98
USP54-209ENST00000464635 PSG3Q16557 428 aa8.92□□□□□ -0.98
USP54-209ENST00000464635 DEFB136Q30KP8 78 aa8.92□□□□□ -0.98
USP54-209ENST00000464635 SAPCD1Q5SSQ6 148 aa8.92□□□□□ -0.98
USP54-209ENST00000464635 TMEM88Q6PEY1 159 aa8.92□□□□□ -0.98
USP54-209ENST00000464635 UNQ9165/PRO28630Q6UXU0 137 aa8.92□□□□□ -0.98
USP54-209ENST00000464635 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.92□□□□□ -0.98
USP54-209ENST00000464635 CBLN2Q8IUK8 224 aa8.92□□□□□ -0.98
USP54-209ENST00000464635 OR10G8Q8NGN5 311 aa8.92□□□□□ -0.98
USP54-209ENST00000464635 OR5B12Q96R08 314 aa8.92□□□□□ -0.98
USP54-209ENST00000464635 ZNF492Q9P255 531 aa8.92□□□□□ -0.98
USP54-209ENST00000464635 IGHV3-35A0A0C4DH35 117 aa8.91□□□□□ -0.98
USP54-209ENST00000464635 FAM231BA6NCW3 169 aa8.91□□□□□ -0.98
USP54-209ENST00000464635 K7EN84 100 aa8.91□□□□□ -0.98
USP54-209ENST00000464635 CHEK1O14757 476 aa8.91□□□□□ -0.98
USP54-209ENST00000464635 IGLV2-11P01706 119 aa8.91□□□□□ -0.98
USP54-209ENST00000464635 RPL19P84098 196 aaKnown RBP8.91□□□□□ -0.98
USP54-209ENST00000464635 CT83Q5H943 113 aa8.91□□□□□ -0.98
USP54-209ENST00000464635 KCNIP4Q6PIL6 250 aa8.91□□□□□ -0.98
USP54-209ENST00000464635 RAX2Q96IS3 184 aa8.91□□□□□ -0.98
USP54-209ENST00000464635 LENEPQ9Y5L5 61 aa8.91□□□□□ -0.98
USP54-209ENST00000464635 TRAV2A0A0B4J234 112 aa8.9□□□□□ -0.98
USP54-209ENST00000464635 TRBV7-9A0A0J9YWB2 115 aa8.9□□□□□ -0.98
USP54-209ENST00000464635 LINC01619G3V211 115 aa8.9□□□□□ -0.98
USP54-209ENST00000464635 SLC17A3O00476 420 aa8.9□□□□□ -0.98
USP54-209ENST00000464635 FLI1Q01543 452 aaPredicted RBP8.9□□□□□ -0.98
USP54-209ENST00000464635 EXOC3-AS1Q8N2X6 119 aa8.9□□□□□ -0.98
USP54-209ENST00000464635 RHPN1-AS1Q9BWJ2 59 aa8.9□□□□□ -0.98
USP54-209ENST00000464635 PEMTQ9UBM1 199 aa8.9□□□□□ -0.98
USP54-209ENST00000464635 ZNF320A2RRD8 509 aa8.89□□□□□ -0.99
USP54-209ENST00000464635 CCL24O00175 119 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms