RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 MIC13Q5XKP0 118 aa16.01■□□□□ 0.15
PTPN4-207ENST00000460162 ATG101Q9BSB4 218 aa16.01■□□□□ 0.15
PTPN4-207ENST00000460162 DNAJC4Q9NNZ3 241 aa16.01■□□□□ 0.15
PTPN4-207ENST00000460162 UBE2L5PA0A1B0GUS4 154 aa16■□□□□ 0.15
PTPN4-207ENST00000460162 FAM24AA6NFZ4 105 aa16■□□□□ 0.15
PTPN4-207ENST00000460162 H3BTX0 84 aa16■□□□□ 0.15
PTPN4-207ENST00000460162 SULT1A1P50225 295 aa16■□□□□ 0.15
PTPN4-207ENST00000460162 S100A10P60903 97 aa16■□□□□ 0.15
PTPN4-207ENST00000460162 FCN2Q15485 313 aa16■□□□□ 0.15
PTPN4-207ENST00000460162 STX12Q86Y82 276 aa16■□□□□ 0.15
PTPN4-207ENST00000460162 SAT2Q96F10 170 aaPredicted RBP16■□□□□ 0.15
PTPN4-207ENST00000460162 PKD1P98161 4303 aa15.99■□□□□ 0.15
PTPN4-207ENST00000460162 H3BQ15 152 aa15.99■□□□□ 0.15
PTPN4-207ENST00000460162 H2AFB2P0C5Z0 115 aa15.99■□□□□ 0.15
PTPN4-207ENST00000460162 S100A11P31949 105 aa15.99■□□□□ 0.15
PTPN4-207ENST00000460162 RPL29P47914 159 aaKnown RBP15.99■□□□□ 0.15
PTPN4-207ENST00000460162 HBG1P69891 147 aa15.99■□□□□ 0.15
PTPN4-207ENST00000460162 HBG2P69892 147 aa15.99■□□□□ 0.15
PTPN4-207ENST00000460162 GFI1BQ5VTD9 330 aa15.99■□□□□ 0.15
PTPN4-207ENST00000460162 ODF3Q96PU9 254 aa15.99■□□□□ 0.15
PTPN4-207ENST00000460162 PRAC2D3DTV9 90 aa15.98■□□□□ 0.15
PTPN4-207ENST00000460162 ZNF253O75346 499 aa15.98■□□□□ 0.15
PTPN4-207ENST00000460162 BAXQ07812 192 aa15.98■□□□□ 0.15
PTPN4-207ENST00000460162 C1orf134Q5TEV5 83 aa15.98■□□□□ 0.15
PTPN4-207ENST00000460162 NOP10Q9NPE3 64 aaKnown RBP15.98■□□□□ 0.15
PTPN4-207ENST00000460162 SLC39A9Q9NUM3 307 aa15.98■□□□□ 0.15
PTPN4-207ENST00000460162 DNAH11Q96DT5 4516 aa15.98■□□□□ 0.15
PTPN4-207ENST00000460162 MED14OSP0DP75 135 aa15.97■□□□□ 0.15
PTPN4-207ENST00000460162 IL15RAQ13261 267 aa15.97■□□□□ 0.15
PTPN4-207ENST00000460162 KIR3DS1Q14943 382 aa15.97■□□□□ 0.15
PTPN4-207ENST00000460162 TMEM252Q8N6L7 170 aa15.97■□□□□ 0.15
PTPN4-207ENST00000460162 CHAC2Q8WUX2 184 aa15.97■□□□□ 0.15
PTPN4-207ENST00000460162 PARD6GQ9BYG4 376 aaPredicted RBP15.97■□□□□ 0.15
PTPN4-207ENST00000460162 TRAV5A0A0B4J249 113 aa15.96■□□□□ 0.15
PTPN4-207ENST00000460162 FAM240BA0A1B0GVZ2 78 aa15.96■□□□□ 0.15
PTPN4-207ENST00000460162 IGSF23A1L1A6 192 aa15.96■□□□□ 0.15
PTPN4-207ENST00000460162 NPIPB6E9PJ23 425 aa15.96■□□□□ 0.15
PTPN4-207ENST00000460162 NUDT3O95989 172 aa15.96■□□□□ 0.15
PTPN4-207ENST00000460162 RAB32Q13637 225 aa15.96■□□□□ 0.15
PTPN4-207ENST00000460162 LINC00299Q6ZSB3 139 aa15.96■□□□□ 0.15
PTPN4-207ENST00000460162 CCDC28AQ8IWP9 274 aa15.96■□□□□ 0.15
PTPN4-207ENST00000460162 MRPL53Q96EL3 112 aaKnown RBP15.96■□□□□ 0.15
PTPN4-207ENST00000460162 DYNC1H1Q14204 4646 aaKnown RBP15.95■□□□□ 0.14
PTPN4-207ENST00000460162 LEPP41159 167 aa15.95■□□□□ 0.14
PTPN4-207ENST00000460162 LINC00612Q8N6U2 182 aa15.95■□□□□ 0.14
PTPN4-207ENST00000460162 ZNF586Q9NXT0 402 aa15.95■□□□□ 0.14
PTPN4-207ENST00000460162 MPDU1O75352 247 aa15.94■□□□□ 0.14
PTPN4-207ENST00000460162 CCL18P55774 89 aa15.94■□□□□ 0.14
PTPN4-207ENST00000460162 ATP6V1FQ16864 119 aa15.94■□□□□ 0.14
PTPN4-207ENST00000460162 MZT2BQ6NZ67 158 aa15.94■□□□□ 0.14
PTPN4-207ENST00000460162 ZNRF2Q8NHG8 242 aa15.94■□□□□ 0.14
PTPN4-207ENST00000460162 RNF141Q8WVD5 230 aa15.94■□□□□ 0.14
PTPN4-207ENST00000460162 TMEM14CQ9P0S9 112 aa15.94■□□□□ 0.14
PTPN4-207ENST00000460162 FGF7P21781 194 aa15.93■□□□□ 0.14
PTPN4-207ENST00000460162 GPN1Q9HCN4 374 aaPredicted RBP15.93■□□□□ 0.14
PTPN4-207ENST00000460162 TRBV19A0A075B6N1 114 aa15.92■□□□□ 0.14
PTPN4-207ENST00000460162 SNURFLB1AK76 121 aa15.92■□□□□ 0.14
PTPN4-207ENST00000460162 CT45A10P0DMU9 189 aa15.92■□□□□ 0.14
PTPN4-207ENST00000460162 ASAH1Q13510 395 aa15.92■□□□□ 0.14
PTPN4-207ENST00000460162 PDE6HQ13956 83 aa15.92■□□□□ 0.14
PTPN4-207ENST00000460162 PYGO2Q9BRQ0 406 aa15.92■□□□□ 0.14
PTPN4-207ENST00000460162 NBDYA0A0U1RRE5 68 aa15.91■□□□□ 0.14
PTPN4-207ENST00000460162 RLN2P04090 185 aa15.91■□□□□ 0.14
PTPN4-207ENST00000460162 NPCDR1Q9BY65 106 aa15.91■□□□□ 0.14
PTPN4-207ENST00000460162 PRELID1Q9Y255 219 aa15.91■□□□□ 0.14
PTPN4-207ENST00000460162 TRAV12-3A0A0B4J271 114 aa15.9■□□□□ 0.14
PTPN4-207ENST00000460162 J3KRW8 73 aa15.9■□□□□ 0.14
PTPN4-207ENST00000460162 HIST1H1EP10412 219 aaKnown RBP15.9■□□□□ 0.14
PTPN4-207ENST00000460162 CLINT1Q14677 625 aa15.9■□□□□ 0.14
PTPN4-207ENST00000460162 S100ZQ8WXG8 99 aa15.9■□□□□ 0.14
PTPN4-207ENST00000460162 ZNF503Q96F45 646 aa15.9■□□□□ 0.14
PTPN4-207ENST00000460162 LINC00588Q9Y4M8 146 aa15.9■□□□□ 0.14
PTPN4-207ENST00000460162 M0R3E3 92 aa15.89■□□□□ 0.13
PTPN4-207ENST00000460162 SLC25A5P05141 298 aaKnown RBP15.89■□□□□ 0.13
PTPN4-207ENST00000460162 M6PRP20645 277 aa15.89■□□□□ 0.13
PTPN4-207ENST00000460162 GNPNAT1Q96EK6 184 aaPredicted RBP15.89■□□□□ 0.13
PTPN4-207ENST00000460162 GAGE12BA1L429 117 aa15.88■□□□□ 0.13
PTPN4-207ENST00000460162 GAGE7O76087 117 aa15.88■□□□□ 0.13
PTPN4-207ENST00000460162 NDUFB4O95168 129 aa15.88■□□□□ 0.13
PTPN4-207ENST00000460162 GAGE12FP0CL80 117 aa15.88■□□□□ 0.13
PTPN4-207ENST00000460162 GAGE12GP0CL81 117 aa15.88■□□□□ 0.13
PTPN4-207ENST00000460162 GAGE12IP0CL82 117 aa15.88■□□□□ 0.13
PTPN4-207ENST00000460162 TIMM9Q9Y5J7 89 aa15.88■□□□□ 0.13
PTPN4-207ENST00000460162 TRAV26-1A0A087WT03 109 aa15.87■□□□□ 0.13
PTPN4-207ENST00000460162 C7orf71A4D174 169 aa15.87■□□□□ 0.13
PTPN4-207ENST00000460162 PYYP10082 97 aa15.87■□□□□ 0.13
PTPN4-207ENST00000460162 DAZ2Q13117 558 aaKnown RBP15.87■□□□□ 0.13
PTPN4-207ENST00000460162 OR5I1Q13606 314 aa15.87■□□□□ 0.13
PTPN4-207ENST00000460162 SSX7Q7RTT5 188 aa15.87■□□□□ 0.13
PTPN4-207ENST00000460162 C6orf223Q8N319 242 aa15.87■□□□□ 0.13
PTPN4-207ENST00000460162 ZNF680Q8NEM1 530 aa15.87■□□□□ 0.13
PTPN4-207ENST00000460162 ENKURQ8TC29 256 aa15.87■□□□□ 0.13
PTPN4-207ENST00000460162 RXFP4Q8TDU9 374 aa15.87■□□□□ 0.13
PTPN4-207ENST00000460162 AAMDCQ9H7C9 122 aa15.87■□□□□ 0.13
PTPN4-207ENST00000460162 KLLNB2CW77 178 aa15.86■□□□□ 0.13
PTPN4-207ENST00000460162 H3BNG1 76 aa15.86■□□□□ 0.13
PTPN4-207ENST00000460162 OR5C1Q8NGR4 320 aa15.86■□□□□ 0.13
PTPN4-207ENST00000460162 FAM19A4Q96LR4 140 aa15.86■□□□□ 0.13
PTPN4-207ENST00000460162 LINC00477Q96M19 166 aa15.86■□□□□ 0.13
PTPN4-207ENST00000460162 SLC25A31Q9H0C2 315 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms