RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 DKK2Q9UBU2 259 aa11.54□□□□□ -0.56
COL7A1-203ENST00000459756 APLNQ9ULZ1 77 aa11.54□□□□□ -0.56
COL7A1-203ENST00000459756 TRAV5A0A0B4J249 113 aa11.53□□□□□ -0.56
COL7A1-203ENST00000459756 SLC17A3O00476 420 aa11.53□□□□□ -0.56
COL7A1-203ENST00000459756 Q6ZNX1 250 aa11.53□□□□□ -0.56
COL7A1-203ENST00000459756 SAT2Q96F10 170 aaPredicted RBP11.53□□□□□ -0.56
COL7A1-203ENST00000459756 KMT2AQ03164 3969 aa11.53□□□□□ -0.56
COL7A1-203ENST00000459756 IGHV4-4A0A075B6R2 117 aa11.52□□□□□ -0.57
COL7A1-203ENST00000459756 H3BTX0 84 aa11.52□□□□□ -0.57
COL7A1-203ENST00000459756 FAM222AQ5U5X8 452 aa11.52□□□□□ -0.57
COL7A1-203ENST00000459756 BAP18Q8IXM2 172 aa11.52□□□□□ -0.57
COL7A1-203ENST00000459756 INO80EQ8NBZ0 244 aaPredicted RBP11.52□□□□□ -0.57
COL7A1-203ENST00000459756 NIPSNAP3BQ9BS92 247 aa11.52□□□□□ -0.57
COL7A1-203ENST00000459756 WDR61Q9GZS3 305 aaKnown RBP11.52□□□□□ -0.57
COL7A1-203ENST00000459756 KCNIP2Q9NS61 270 aa11.52□□□□□ -0.57
COL7A1-203ENST00000459756 TMEM14CQ9P0S9 112 aa11.52□□□□□ -0.57
COL7A1-203ENST00000459756 YTHDF2Q9Y5A9 579 aaKnown RBP11.52□□□□□ -0.57
COL7A1-203ENST00000459756 EPPK1P58107 5090 aaKnown RBP11.52□□□□□ -0.57
COL7A1-203ENST00000459756 TRAV12-2A0A075B6T6 113 aa11.51□□□□□ -0.57
COL7A1-203ENST00000459756 G3V3Q6 166 aa11.51□□□□□ -0.57
COL7A1-203ENST00000459756 ARPC5O15511 151 aa11.51□□□□□ -0.57
COL7A1-203ENST00000459756 ZNF253O75346 499 aa11.51□□□□□ -0.57
COL7A1-203ENST00000459756 IFNA5P01569 189 aa11.51□□□□□ -0.57
COL7A1-203ENST00000459756 TMEM256Q8N2U0 113 aa11.51□□□□□ -0.57
COL7A1-203ENST00000459756 OR10J6PQ8NGY7 276 aa11.51□□□□□ -0.57
COL7A1-203ENST00000459756 WFDC1Q9HC57 220 aa11.51□□□□□ -0.57
COL7A1-203ENST00000459756 ZNF586Q9NXT0 402 aa11.51□□□□□ -0.57
COL7A1-203ENST00000459756 VPS13DQ5THJ4 4388 aa11.51□□□□□ -0.57
COL7A1-203ENST00000459756 TSPOP30536 169 aa11.5□□□□□ -0.57
COL7A1-203ENST00000459756 RPP25LQ8N5L8 163 aaKnown RBP11.5□□□□□ -0.57
COL7A1-203ENST00000459756 SCGB1C1Q8TD33 95 aa11.5□□□□□ -0.57
COL7A1-203ENST00000459756 AQP10Q96PS8 301 aa11.5□□□□□ -0.57
COL7A1-203ENST00000459756 TNFSF18Q9UNG2 199 aa11.5□□□□□ -0.57
COL7A1-203ENST00000459756 TRBV19A0A075B6N1 114 aa11.49□□□□□ -0.57
COL7A1-203ENST00000459756 RNF222A6NCQ9 220 aa11.49□□□□□ -0.57
COL7A1-203ENST00000459756 ZNF705GA8MUZ8 300 aaPredicted RBP11.49□□□□□ -0.57
COL7A1-203ENST00000459756 PRAC2D3DTV9 90 aa11.49□□□□□ -0.57
COL7A1-203ENST00000459756 C17orf112F2Z3M2 114 aa11.49□□□□□ -0.57
COL7A1-203ENST00000459756 PRB4P10163 310 aaPredicted RBP11.49□□□□□ -0.57
COL7A1-203ENST00000459756 HIST1H1EP10412 219 aaKnown RBP11.49□□□□□ -0.57
COL7A1-203ENST00000459756 CDKN1BP46527 198 aa11.49□□□□□ -0.57
COL7A1-203ENST00000459756 PDE6HQ13956 83 aa11.49□□□□□ -0.57
COL7A1-203ENST00000459756 GCSAMLQ5JQS6 135 aa11.49□□□□□ -0.57
COL7A1-203ENST00000459756 LINC01587Q99440 93 aa11.49□□□□□ -0.57
COL7A1-203ENST00000459756 TAS2R60P59551 318 aa11.48□□□□□ -0.57
COL7A1-203ENST00000459756 MRPL53Q96EL3 112 aaKnown RBP11.48□□□□□ -0.57
COL7A1-203ENST00000459756 FAM210BQ96KR6 192 aa11.48□□□□□ -0.57
COL7A1-203ENST00000459756 NDUFAF3Q9BU61 184 aa11.48□□□□□ -0.57
COL7A1-203ENST00000459756 LYRM9A8MSI8 78 aa11.47□□□□□ -0.57
COL7A1-203ENST00000459756 PRM2P04554 102 aa11.47□□□□□ -0.57
COL7A1-203ENST00000459756 DAD1P61803 113 aa11.47□□□□□ -0.57
COL7A1-203ENST00000459756 HSD17B11Q8NBQ5 300 aa11.47□□□□□ -0.57
COL7A1-203ENST00000459756 ODF3Q96PU9 254 aa11.47□□□□□ -0.57
COL7A1-203ENST00000459756 C20orf144Q9BQM9 153 aa11.47□□□□□ -0.57
COL7A1-203ENST00000459756 SLC25A2Q9BXI2 301 aa11.47□□□□□ -0.57
COL7A1-203ENST00000459756 PLA2G2EQ9NZK7 142 aa11.47□□□□□ -0.57
COL7A1-203ENST00000459756 PRELID1Q9Y255 219 aa11.47□□□□□ -0.57
COL7A1-203ENST00000459756 TIMM9Q9Y5J7 89 aa11.47□□□□□ -0.57
COL7A1-203ENST00000459756 A0A1B0GVG6 124 aa11.46□□□□□ -0.57
COL7A1-203ENST00000459756 NPIPB6E9PJ23 425 aa11.46□□□□□ -0.57
COL7A1-203ENST00000459756 H7BYZ3 331 aa11.46□□□□□ -0.57
COL7A1-203ENST00000459756 NDUFB4O95168 129 aa11.46□□□□□ -0.57
COL7A1-203ENST00000459756 PYYP10082 97 aa11.46□□□□□ -0.57
COL7A1-203ENST00000459756 FAM167A-AS1Q96KT0 104 aa11.46□□□□□ -0.57
COL7A1-203ENST00000459756 MRPL32Q9BYC8 188 aaKnown RBP11.46□□□□□ -0.57
COL7A1-203ENST00000459756 AZU1P20160 251 aa11.45□□□□□ -0.58
COL7A1-203ENST00000459756 ZNF266Q14584 549 aa11.45□□□□□ -0.58
COL7A1-203ENST00000459756 FFAR4Q5NUL3 377 aa11.45□□□□□ -0.58
COL7A1-203ENST00000459756 ZNF493Q6ZR52 646 aa11.45□□□□□ -0.58
COL7A1-203ENST00000459756 MIR17HGQ75NE6 70 aa11.45□□□□□ -0.58
COL7A1-203ENST00000459756 OR11H4Q8NGC9 324 aa11.45□□□□□ -0.58
COL7A1-203ENST00000459756 BLNKQ8WV28 456 aa11.45□□□□□ -0.58
COL7A1-203ENST00000459756 C16orf74Q96GX8 76 aa11.45□□□□□ -0.58
COL7A1-203ENST00000459756 ST6GAL2Q96JF0 529 aa11.45□□□□□ -0.58
COL7A1-203ENST00000459756 DNAH6Q9C0G6 4158 aa11.44□□□□□ -0.58
COL7A1-203ENST00000459756 PLAC8L1A1L4L8 177 aa11.44□□□□□ -0.58
COL7A1-203ENST00000459756 P0DMU3 169 aa11.44□□□□□ -0.58
COL7A1-203ENST00000459756 FAM231AP0DMU4 169 aa11.44□□□□□ -0.58
COL7A1-203ENST00000459756 FAM231CP0DMU5 169 aa11.44□□□□□ -0.58
COL7A1-203ENST00000459756 CT45A10P0DMU9 189 aa11.44□□□□□ -0.58
COL7A1-203ENST00000459756 HTN1P15515 57 aa11.44□□□□□ -0.58
COL7A1-203ENST00000459756 HTN3P15516 51 aa11.44□□□□□ -0.58
COL7A1-203ENST00000459756 LEPP41159 167 aa11.44□□□□□ -0.58
COL7A1-203ENST00000459756 GFI1BQ5VTD9 330 aa11.44□□□□□ -0.58
COL7A1-203ENST00000459756 RPL7L1Q6DKI1 246 aaKnown RBP11.44□□□□□ -0.58
COL7A1-203ENST00000459756 AKAP14Q86UN6 197 aa11.44□□□□□ -0.58
COL7A1-203ENST00000459756 AAMDCQ9H7C9 122 aa11.44□□□□□ -0.58
COL7A1-203ENST00000459756 FUT9Q9Y231 359 aa11.44□□□□□ -0.58
COL7A1-203ENST00000459756 M0R3E3 92 aa11.43□□□□□ -0.58
COL7A1-203ENST00000459756 NBEAP1P0C6P0 100 aa11.43□□□□□ -0.58
COL7A1-203ENST00000459756 KIR3DS1Q14943 382 aa11.43□□□□□ -0.58
COL7A1-203ENST00000459756 TMEM263Q8WUH6 116 aaKnown RBP11.43□□□□□ -0.58
COL7A1-203ENST00000459756 PARD6GQ9BYG4 376 aaPredicted RBP11.43□□□□□ -0.58
COL7A1-203ENST00000459756 OR51M1Q9H341 326 aa11.43□□□□□ -0.58
COL7A1-203ENST00000459756 BORCS7-ASMTA0A0B4J1R7 106 aa11.42□□□□□ -0.58
COL7A1-203ENST00000459756 EIF3GO75821 320 aaKnown RBP eCLIP11.42□□□□□ -0.58
COL7A1-203ENST00000459756 EXOC3-AS1Q8N2X6 119 aa11.42□□□□□ -0.58
COL7A1-203ENST00000459756 RNASE8Q8TDE3 154 aaKnown RBP11.42□□□□□ -0.58
COL7A1-203ENST00000459756 FXYD5Q96DB9 178 aa11.42□□□□□ -0.58
COL7A1-203ENST00000459756 LINC00477Q96M19 166 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms