RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 TIMM9Q9Y5J7 89 aa12.48□□□□□ -0.41
USP39-208ENST00000455732 M0R2Z0 102 aa12.47□□□□□ -0.41
USP39-208ENST00000455732 INSP01308 110 aa12.47□□□□□ -0.41
USP39-208ENST00000455732 LINC00476Q8WZB0 136 aa12.47□□□□□ -0.41
USP39-208ENST00000455732 PRELID1Q9Y255 219 aa12.47□□□□□ -0.41
USP39-208ENST00000455732 KLK5Q9Y337 293 aaPredicted RBP12.47□□□□□ -0.41
USP39-208ENST00000455732 RFNGQ9Y644 331 aa12.47□□□□□ -0.41
USP39-208ENST00000455732 IGHV3OR16-12A0A075B7B8 117 aa12.46□□□□□ -0.41
USP39-208ENST00000455732 PRAC2D3DTV9 90 aa12.46□□□□□ -0.41
USP39-208ENST00000455732 RHOBP62745 196 aa12.46□□□□□ -0.41
USP39-208ENST00000455732 OR2T35Q8NGX2 323 aa12.46□□□□□ -0.41
USP39-208ENST00000455732 OR10J6PQ8NGY7 276 aa12.46□□□□□ -0.41
USP39-208ENST00000455732 OR51M1Q9H341 326 aa12.46□□□□□ -0.41
USP39-208ENST00000455732 RNF222A6NCQ9 220 aa12.45□□□□□ -0.42
USP39-208ENST00000455732 HBE1P02100 147 aa12.45□□□□□ -0.42
USP39-208ENST00000455732 BAP18Q8IXM2 172 aa12.45□□□□□ -0.42
USP39-208ENST00000455732 FXYD5Q96DB9 178 aa12.45□□□□□ -0.42
USP39-208ENST00000455732 ODF3Q96PU9 254 aa12.45□□□□□ -0.42
USP39-208ENST00000455732 PAXXQ9BUH6 204 aa12.45□□□□□ -0.42
USP39-208ENST00000455732 C11orf94C9JXX5 98 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 NPIPB6E9PJ23 425 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 G3V3Q6 166 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 NBEAP1P0C6P0 100 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 M6PRP20645 277 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 CDKN1BP46527 198 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 TAS2R45P59539 299 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 ACOT6Q3I5F7 207 aaPredicted RBP12.44□□□□□ -0.42
USP39-208ENST00000455732 KHDC3LQ587J8 217 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 INO80EQ8NBZ0 244 aaPredicted RBP12.44□□□□□ -0.42
USP39-208ENST00000455732 OR2G3Q8NGZ4 309 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 BLNKQ8WV28 456 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 RNF141Q8WVD5 230 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 ZNF503Q96F45 646 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 AAMDCQ9H7C9 122 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 PPP1R14DQ9NXH3 145 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 TNFSF18Q9UNG2 199 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 CELA1Q9UNI1 258 aa12.44□□□□□ -0.42
USP39-208ENST00000455732 FXYD6-FXYD2A0A087WZ82 144 aa12.43□□□□□ -0.42
USP39-208ENST00000455732 TEX48A0A1B0GUV7 120 aa12.43□□□□□ -0.42
USP39-208ENST00000455732 M0R3E3 92 aa12.43□□□□□ -0.42
USP39-208ENST00000455732 OR7C2O60412 319 aa12.43□□□□□ -0.42
USP39-208ENST00000455732 PRB4P10163 310 aaPredicted RBP12.43□□□□□ -0.42
USP39-208ENST00000455732 RRN3P1Q2M238 152 aa12.43□□□□□ -0.42
USP39-208ENST00000455732 TMEM256Q8N2U0 113 aa12.43□□□□□ -0.42
USP39-208ENST00000455732 PSMG3Q9BT73 122 aaPredicted RBP12.43□□□□□ -0.42
USP39-208ENST00000455732 TMEM208Q9BTX3 173 aa12.43□□□□□ -0.42
USP39-208ENST00000455732 TRAV12-2A0A075B6T6 113 aa12.42□□□□□ -0.42
USP39-208ENST00000455732 LOC102723971A0A1B0GUV8 181 aa12.42□□□□□ -0.42
USP39-208ENST00000455732 OR10J4P0C629 311 aa12.42□□□□□ -0.42
USP39-208ENST00000455732 TSPOP30536 169 aa12.42□□□□□ -0.42
USP39-208ENST00000455732 Q6ZTC4 211 aa12.42□□□□□ -0.42
USP39-208ENST00000455732 EXOC3-AS1Q8N2X6 119 aa12.42□□□□□ -0.42
USP39-208ENST00000455732 C20orf144Q9BQM9 153 aa12.42□□□□□ -0.42
USP39-208ENST00000455732 SPART-AS1P0CW21 52 aa12.41□□□□□ -0.42
USP39-208ENST00000455732 UBE2L3P68036 154 aaKnown RBP12.41□□□□□ -0.42
USP39-208ENST00000455732 C12orf74Q32Q52 190 aa12.41□□□□□ -0.42
USP39-208ENST00000455732 LYPD1Q8N2G4 141 aa12.41□□□□□ -0.42
USP39-208ENST00000455732 RPP25LQ8N5L8 163 aaKnown RBP12.41□□□□□ -0.42
USP39-208ENST00000455732 HSD17B11Q8NBQ5 300 aa12.41□□□□□ -0.42
USP39-208ENST00000455732 PHYHIPLQ96FC7 376 aa12.41□□□□□ -0.42
USP39-208ENST00000455732 KMT2AQ03164 3969 aa12.41□□□□□ -0.42
USP39-208ENST00000455732 TRAV10A0A0B4J240 114 aa12.4□□□□□ -0.42
USP39-208ENST00000455732 LY6G6CO95867 125 aa12.4□□□□□ -0.42
USP39-208ENST00000455732 CT45A10P0DMU9 189 aa12.4□□□□□ -0.42
USP39-208ENST00000455732 ATP6V0CP27449 155 aa12.4□□□□□ -0.42
USP39-208ENST00000455732 LEPP41159 167 aa12.4□□□□□ -0.42
USP39-208ENST00000455732 RAB2AP61019 212 aa12.4□□□□□ -0.42
USP39-208ENST00000455732 ICAM4Q14773 271 aa12.4□□□□□ -0.42
USP39-208ENST00000455732 PQLC2Q6ZP29 291 aa12.4□□□□□ -0.42
USP39-208ENST00000455732 C2CD4CQ8TF44 421 aa12.4□□□□□ -0.42
USP39-208ENST00000455732 DKK2Q9UBU2 259 aa12.4□□□□□ -0.42
USP39-208ENST00000455732 EMP1P54849 157 aa12.39□□□□□ -0.43
USP39-208ENST00000455732 TCTAP57738 103 aa12.39□□□□□ -0.43
USP39-208ENST00000455732 TAS2R60P59551 318 aa12.39□□□□□ -0.43
USP39-208ENST00000455732 SERF2P84101 59 aa12.39□□□□□ -0.43
USP39-208ENST00000455732 C9orf47Q6ZRZ4 202 aa12.39□□□□□ -0.43
USP39-208ENST00000455732 OR10G4Q8NGN3 311 aa12.39□□□□□ -0.43
USP39-208ENST00000455732 OR10G9Q8NGN4 311 aa12.39□□□□□ -0.43
USP39-208ENST00000455732 OR10G7Q8NGN6 311 aa12.39□□□□□ -0.43
USP39-208ENST00000455732 LINC00477Q96M19 166 aa12.39□□□□□ -0.43
USP39-208ENST00000455732 YTHDF2Q9Y5A9 579 aaKnown RBP12.39□□□□□ -0.43
USP39-208ENST00000455732 A0A1W2PPV4 95 aa12.38□□□□□ -0.43
USP39-208ENST00000455732 H7BYZ3 331 aa12.38□□□□□ -0.43
USP39-208ENST00000455732 MBP02144 154 aa12.38□□□□□ -0.43
USP39-208ENST00000455732 FAM222AQ5U5X8 452 aa12.38□□□□□ -0.43
USP39-208ENST00000455732 GFI1BQ5VTD9 330 aa12.38□□□□□ -0.43
USP39-208ENST00000455732 FAM19A4Q96LR4 140 aa12.38□□□□□ -0.43
USP39-208ENST00000455732 VPS13DQ5THJ4 4388 aa12.37□□□□□ -0.43
USP39-208ENST00000455732 BORCS7-ASMTA0A0B4J1R7 106 aa12.37□□□□□ -0.43
USP39-208ENST00000455732 ZNF705GA8MUZ8 300 aaPredicted RBP12.37□□□□□ -0.43
USP39-208ENST00000455732 KIR3DS1Q14943 382 aa12.37□□□□□ -0.43
USP39-208ENST00000455732 RPL7L1Q6DKI1 246 aaKnown RBP12.37□□□□□ -0.43
USP39-208ENST00000455732 FAM122CQ6P4D5 195 aa12.37□□□□□ -0.43
USP39-208ENST00000455732 GNPNAT1Q96EK6 184 aaPredicted RBP12.37□□□□□ -0.43
USP39-208ENST00000455732 LINC01587Q99440 93 aa12.37□□□□□ -0.43
USP39-208ENST00000455732 AGPAT4-IT1Q9H0P7 198 aa12.37□□□□□ -0.43
USP39-208ENST00000455732 SH3BGRL3Q9H299 93 aa12.37□□□□□ -0.43
USP39-208ENST00000455732 Q9H3A6 140 aa12.37□□□□□ -0.43
USP39-208ENST00000455732 IGKV2-40A0A087WW87 121 aaPredicted RBP12.36□□□□□ -0.43
USP39-208ENST00000455732 PLAC8L1A1L4L8 177 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms