RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 C11orf52Q96A22 123 aa10.66□□□□□ -0.7
SF3B1-204ENST00000414963 C9JQL5 133 aa10.65□□□□□ -0.7
SF3B1-204ENST00000414963 TMEM250H0YL14 139 aa10.65□□□□□ -0.7
SF3B1-204ENST00000414963 SLC25A5P05141 298 aaKnown RBP10.65□□□□□ -0.7
SF3B1-204ENST00000414963 SRP19P09132 144 aaKnown RBP10.65□□□□□ -0.7
SF3B1-204ENST00000414963 IGLL1P15814 213 aa10.65□□□□□ -0.7
SF3B1-204ENST00000414963 HLA-DMBP28068 263 aa10.65□□□□□ -0.7
SF3B1-204ENST00000414963 TFPI2P48307 235 aa10.65□□□□□ -0.7
SF3B1-204ENST00000414963 CMC4P56277 68 aaPredicted RBP10.65□□□□□ -0.7
SF3B1-204ENST00000414963 SNRPD3P62318 126 aaKnown RBP10.65□□□□□ -0.7
SF3B1-204ENST00000414963 IGFL4Q6B9Z1 124 aa10.65□□□□□ -0.7
SF3B1-204ENST00000414963 RNF182Q8N6D2 247 aa10.65□□□□□ -0.7
SF3B1-204ENST00000414963 CMTM2Q8TAZ6 248 aa10.65□□□□□ -0.7
SF3B1-204ENST00000414963 C20orf173Q96LM9 149 aa10.65□□□□□ -0.7
SF3B1-204ENST00000414963 SERTM2A0A1B0GWG4 89 aa10.64□□□□□ -0.71
SF3B1-204ENST00000414963 M0R3E3 92 aa10.64□□□□□ -0.71
SF3B1-204ENST00000414963 CSN1S1P47710 185 aa10.64□□□□□ -0.71
SF3B1-204ENST00000414963 GUCA2BQ16661 112 aa10.64□□□□□ -0.71
SF3B1-204ENST00000414963 FAM24BQ8N5W8 94 aa10.64□□□□□ -0.71
SF3B1-204ENST00000414963 RPUSD4Q96CM3 377 aaKnown RBP10.64□□□□□ -0.71
SF3B1-204ENST00000414963 FAM110AQ9BQ89 295 aa10.64□□□□□ -0.71
SF3B1-204ENST00000414963 ATG101Q9BSB4 218 aa10.64□□□□□ -0.71
SF3B1-204ENST00000414963 SLC35B3Q9H1N7 401 aa10.64□□□□□ -0.71
SF3B1-204ENST00000414963 KLF12Q9Y4X4 402 aa10.64□□□□□ -0.71
SF3B1-204ENST00000414963 TRRAPQ9Y4A5 3859 aa10.64□□□□□ -0.71
SF3B1-204ENST00000414963 ZNF705FA8MVS1 300 aaPredicted RBP10.63□□□□□ -0.71
SF3B1-204ENST00000414963 DIRC3C9JPN6 131 aa10.63□□□□□ -0.71
SF3B1-204ENST00000414963 PEX7O00628 323 aa10.63□□□□□ -0.71
SF3B1-204ENST00000414963 TCRAP04437 139 aa10.63□□□□□ -0.71
SF3B1-204ENST00000414963 LINC00052Q96N35 136 aa10.63□□□□□ -0.71
SF3B1-204ENST00000414963 PKD1L1Q8TDX9 2849 aa10.63□□□□□ -0.71
SF3B1-204ENST00000414963 NOTCH3Q9UM47 2321 aa10.63□□□□□ -0.71
SF3B1-204ENST00000414963 SCO2A0A1W2PP80 73 aa10.62□□□□□ -0.71
SF3B1-204ENST00000414963 RBAKDNA6NC62 111 aa10.62□□□□□ -0.71
SF3B1-204ENST00000414963 ZNF688P0C7X2 276 aa10.62□□□□□ -0.71
SF3B1-204ENST00000414963 GNG5P63218 68 aa10.62□□□□□ -0.71
SF3B1-204ENST00000414963 SLC7A5P1Q8MH63 180 aa10.62□□□□□ -0.71
SF3B1-204ENST00000414963 CYB561D1Q8N8Q1 229 aa10.62□□□□□ -0.71
SF3B1-204ENST00000414963 ZNF738Q8NE65 137 aa10.62□□□□□ -0.71
SF3B1-204ENST00000414963 C2CD4CQ8TF44 421 aa10.62□□□□□ -0.71
SF3B1-204ENST00000414963 TREM1Q9NP99 234 aa10.62□□□□□ -0.71
SF3B1-204ENST00000414963 FBLL1A6NHQ2 334 aaKnown RBP10.61□□□□□ -0.71
SF3B1-204ENST00000414963 PRAC2D3DTV9 90 aa10.61□□□□□ -0.71
SF3B1-204ENST00000414963 S100A9P06702 114 aaKnown RBP10.61□□□□□ -0.71
SF3B1-204ENST00000414963 PSMG4Q5JS54 123 aa10.61□□□□□ -0.71
SF3B1-204ENST00000414963 MAP6D1Q9H9H5 199 aa10.61□□□□□ -0.71
SF3B1-204ENST00000414963 ZMAT5Q9UDW3 170 aaKnown RBP10.61□□□□□ -0.71
SF3B1-204ENST00000414963 TRBV6-1A0A0K0K1D8 114 aa10.6□□□□□ -0.71
SF3B1-204ENST00000414963 TMEM218A2RU14 115 aa10.6□□□□□ -0.71
SF3B1-204ENST00000414963 K7EQM0 130 aa10.6□□□□□ -0.71
SF3B1-204ENST00000414963 DEFB131AP59861 70 aa10.6□□□□□ -0.71
SF3B1-204ENST00000414963 EGFEM1PQ0D2K5 195 aa10.6□□□□□ -0.71
SF3B1-204ENST00000414963 ODF3L2Q3SX64 289 aa10.6□□□□□ -0.71
SF3B1-204ENST00000414963 C9orf47Q6ZRZ4 202 aa10.6□□□□□ -0.71
SF3B1-204ENST00000414963 GOLT1AQ6ZVE7 132 aa10.6□□□□□ -0.71
SF3B1-204ENST00000414963 OR8A1Q8NGG7 326 aa10.6□□□□□ -0.71
SF3B1-204ENST00000414963 C19orf73Q9NVV2 129 aa10.6□□□□□ -0.71
SF3B1-204ENST00000414963 PPP1R14DQ9NXH3 145 aa10.6□□□□□ -0.71
SF3B1-204ENST00000414963 IGLV2-11P01706 119 aa10.59□□□□□ -0.71
SF3B1-204ENST00000414963 AKR1C3P42330 323 aa10.59□□□□□ -0.71
SF3B1-204ENST00000414963 CNN1P51911 297 aaKnown RBP10.59□□□□□ -0.71
SF3B1-204ENST00000414963 TAS2R60P59551 318 aa10.59□□□□□ -0.71
SF3B1-204ENST00000414963 TMEM183BQ1AE95 376 aa10.59□□□□□ -0.71
SF3B1-204ENST00000414963 OXLD1Q5BKU9 147 aa10.59□□□□□ -0.71
SF3B1-204ENST00000414963 FOXI2Q6ZQN5 318 aa10.59□□□□□ -0.71
SF3B1-204ENST00000414963 TMEM75Q8N9X5 138 aa10.59□□□□□ -0.71
SF3B1-204ENST00000414963 FMC1Q96HJ9 113 aa10.59□□□□□ -0.71
SF3B1-204ENST00000414963 SAV1Q9H4B6 383 aaPredicted RBP10.59□□□□□ -0.71
SF3B1-204ENST00000414963 IGKV2-40A0A087WW87 121 aaPredicted RBP10.58□□□□□ -0.72
SF3B1-204ENST00000414963 A0A0J9YX75 114 aa10.58□□□□□ -0.72
SF3B1-204ENST00000414963 OR11H12B2RN74 326 aa10.58□□□□□ -0.72
SF3B1-204ENST00000414963 NPIPB6E9PJ23 425 aa10.58□□□□□ -0.72
SF3B1-204ENST00000414963 IGKV2D-40P01614 121 aaPredicted RBP10.58□□□□□ -0.72
SF3B1-204ENST00000414963 SFTA3P0C7M3 94 aa10.58□□□□□ -0.72
SF3B1-204ENST00000414963 RPL35P42766 123 aaKnown RBP10.58□□□□□ -0.72
SF3B1-204ENST00000414963 FAM74A3Q4VXF1 159 aa10.58□□□□□ -0.72
SF3B1-204ENST00000414963 SOHLH1Q5JUK2 328 aa10.58□□□□□ -0.72
SF3B1-204ENST00000414963 SAMD5Q5TGI4 173 aa10.58□□□□□ -0.72
SF3B1-204ENST00000414963 OR10J6PQ8NGY7 276 aa10.58□□□□□ -0.72
SF3B1-204ENST00000414963 LINC00477Q96M19 166 aa10.58□□□□□ -0.72
SF3B1-204ENST00000414963 LINC00479Q96M42 142 aa10.58□□□□□ -0.72
SF3B1-204ENST00000414963 CLUHP3Q96NS8 147 aa10.58□□□□□ -0.72
SF3B1-204ENST00000414963 CITED4Q96RK1 184 aa10.58□□□□□ -0.72
SF3B1-204ENST00000414963 VGLL1Q99990 258 aa10.58□□□□□ -0.72
SF3B1-204ENST00000414963 PARLQ9H300 379 aa10.58□□□□□ -0.72
SF3B1-204ENST00000414963 RPH3ALQ9UNE2 315 aa10.58□□□□□ -0.72
SF3B1-204ENST00000414963 A8MTW9 85 aa10.57□□□□□ -0.72
SF3B1-204ENST00000414963 DUSP14O95147 198 aaKnown RBP10.57□□□□□ -0.72
SF3B1-204ENST00000414963 CD7P09564 240 aa10.57□□□□□ -0.72
SF3B1-204ENST00000414963 EBLN2Q6P2I7 272 aa10.57□□□□□ -0.72
SF3B1-204ENST00000414963 DERL1Q9BUN8 251 aa10.57□□□□□ -0.72
SF3B1-204ENST00000414963 AGPAT4-IT1Q9H0P7 198 aa10.57□□□□□ -0.72
SF3B1-204ENST00000414963 TRAV8-1A0A0A6YYK1 113 aa10.56□□□□□ -0.72
SF3B1-204ENST00000414963 TRAV34A0A0B4J273 112 aa10.56□□□□□ -0.72
SF3B1-204ENST00000414963 TRBV7-9A0A0J9YWB2 115 aa10.56□□□□□ -0.72
SF3B1-204ENST00000414963 C9JCJ5 164 aa10.56□□□□□ -0.72
SF3B1-204ENST00000414963 F6UB75 175 aa10.56□□□□□ -0.72
SF3B1-204ENST00000414963 HLA-DRB4P13762 266 aa10.56□□□□□ -0.72
SF3B1-204ENST00000414963 ZNF138P52744 262 aa10.56□□□□□ -0.72
SF3B1-204ENST00000414963 DEFB1P60022 68 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 142.9 ms