RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 IGLC7A0M8Q6 106 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 K7EIL1 84 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 LGALS9O00182 355 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 SLC25A6P12236 298 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 GP9P14770 177 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 PRCDQ00LT1 54 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 Q56UQ5 140 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 RNASEKQ6P5S7 137 aaKnown RBP4.71□□□□□ -1.66
USP40-202ENST00000409945 IL34Q6ZMJ4 242 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 GPHB5Q86YW7 130 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 OR4D5Q8NGN0 318 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 OR1P1Q8NH06 330 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 LHFPL5Q8TAF8 219 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 DTD1Q8TEA8 209 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 B9D2Q9BPU9 175 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.71□□□□□ -1.66
USP40-202ENST00000409945 UFC1Q9Y3C8 167 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 F11RQ9Y624 299 aaKnown RBP4.71□□□□□ -1.66
USP40-202ENST00000409945 TGP01266 2768 aa4.71□□□□□ -1.66
USP40-202ENST00000409945 ZNF705EA8MWA4 302 aaPredicted RBP4.7□□□□□ -1.66
USP40-202ENST00000409945 E7EUB6 86 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 K7EQG2 157 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 NUPL2O15504 423 aaKnown RBP4.7□□□□□ -1.66
USP40-202ENST00000409945 IGLV1-51P01701 117 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 SULT1A2P50226 295 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 DEFA5Q01523 94 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 RPL7L1Q6DKI1 246 aaKnown RBP4.7□□□□□ -1.66
USP40-202ENST00000409945 OR10W1Q8NGF6 305 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 SMIM8Q96KF7 97 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 LINC00052Q96N35 136 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 SLC25A31Q9H0C2 315 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 PARLQ9H300 379 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 C21orf62Q9NYP8 219 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 IGLV7-46A0A075B6I9 117 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 TRAV26-1A0A087WT03 109 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 A0A1B0GU03 582 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 A0A1B0GW15 77 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 PPP5D1E7EU14 171 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 SOCS3O14543 225 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 TGOLN2O43493 480 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 IGHV3-23P01764 117 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 FABP1P07148 127 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 SEC11BP0C7V7 166 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 RAB5CP51148 216 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 WT1-ASQ06250 92 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 BAXQ07812 192 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 RIGQ13278 110 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 ZNF266Q14584 549 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 KLK9Q2XQG4 91 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 NMSQ5H8A3 153 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 Q6ZRG5 221 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 SLC16A13Q7RTY0 426 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 OR1S2Q8NGQ3 325 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 ARV1Q9H2C2 271 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 TUBA4BQ9H853 241 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 KLK9Q9UKQ9 250 aa4.7□□□□□ -1.66
USP40-202ENST00000409945 RCL1Q9Y2P8 373 aaKnown RBP4.7□□□□□ -1.66
USP40-202ENST00000409945 SORL1Q92673 2214 aa4.69□□□□□ -1.66
USP40-202ENST00000409945 CEBPZOSA8MTT3 80 aa4.69□□□□□ -1.66
USP40-202ENST00000409945 GATCO43716 136 aaKnown RBP4.69□□□□□ -1.66
USP40-202ENST00000409945 GNG7O60262 68 aa4.69□□□□□ -1.66
USP40-202ENST00000409945 TRBV12-3P01733 135 aa4.69□□□□□ -1.66
USP40-202ENST00000409945 SPCS3P61009 180 aa4.69□□□□□ -1.66
USP40-202ENST00000409945 GUCA2BQ16661 112 aa4.69□□□□□ -1.66
USP40-202ENST00000409945 REG3GQ6UW15 175 aa4.69□□□□□ -1.66
USP40-202ENST00000409945 ZNF502Q8TBZ5 544 aa4.69□□□□□ -1.66
USP40-202ENST00000409945 PINX1Q96BK5 328 aaKnown RBP4.69□□□□□ -1.66
USP40-202ENST00000409945 NARS2Q96I59 477 aaKnown RBP4.69□□□□□ -1.66
USP40-202ENST00000409945 GINS3Q9BRX5 216 aa4.69□□□□□ -1.66
USP40-202ENST00000409945 LYRM2Q9NU23 88 aaPredicted RBP4.69□□□□□ -1.66
USP40-202ENST00000409945 MRPL27Q9P0M9 148 aaKnown RBP4.69□□□□□ -1.66
USP40-202ENST00000409945 OR2T8A6NH00 312 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 C2orf70A6NJV1 201 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 KRTAP16-1A8MUX0 517 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 A8MWP6 167 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 NDUFA4O00483 81 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 PITX3O75364 302 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 MED6O75586 246 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 YIF1AO95070 293 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 IGKV1-39P01597 117 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 IGKV1D-39P04432 117 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 CD5P06127 495 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 FOLR2P14207 255 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 PPT1P50897 306 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 CAV2P51636 162 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 NDUFV3P56181 108 aaKnown RBP4.68□□□□□ -1.66
USP40-202ENST00000409945 EWSR1Q01844 656 aaKnown RBP eCLIP4.68□□□□□ -1.66
USP40-202ENST00000409945 OR10G7Q8NGN6 311 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 OR52E5Q8NH55 327 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 C20orf24Q9BUV8 137 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 GFRA4Q9GZZ7 299 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 C11orf1Q9H5F2 150 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 DAZ1Q9NQZ3 744 aaKnown RBP4.68□□□□□ -1.66
USP40-202ENST00000409945 S4R3C0 116 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 TRAV30A0A087WSZ9 112 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 A0A1B0GW64 132 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 TMEM218A2RU14 115 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 UMAD1C9J7I0 102 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 INS-IGF2F8WCM5 200 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 SSSCA1O60232 199 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms